Rorug03G0049200

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0020531
Physical Location & Seq
Forward (+)
3835144 .. 3838943
3800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0049200.1

Sequence Viewer

Length: 1392 bp
ATGGAAGGAGAAACCGTGGAAGCAGGACTACTGACTATGTCCAATGCCGATGGAGAGTCCTCCTCGGTCACCGGAGTTGTTCTTCTGGGCACTTTGGTCGCCCTCTGTGCTTCACTCTCTACTGGCTGTGCTATAGGGTATTCATCAGCTGCAGAATCTGGAATTCTGGAAGACTTGGACCTTACGGTTGAAGCCTACACGGTATTTGGTTCAATAATGACAGTTGGAGGAGTGATTGGTTCATTGGTAAATGGGAAGATAACAGATCTCATCGGACGTAGAGGTACGATGTGGTTCTCTGCAATATTCAGTACTGCAGGGTGGTTTAGTATAGCCTTTGCAAAGAATGCTTGGTGGCTGGACATTGGAAGACTGTTATTGGGATTCAGTGTCGGTATCATTTACTATGTGGTACCTGTCTACATAGCAGAAATAACACCCAAGGATCTTCGAGGAAGGTTCACTTCAGCTAACCAGCTGCTGATTAACTGTGGCTTTTCATTGTTCTTTTTGATTGGAAATGCTATACATTGGCGCACCATGGCTGTACTCGGTGCTATTCCATCCCTACTGCAAATTGTAGGTTTATTCTTCATTCCAGAGTCTCCAAGGTGGCTGGCTAAAGTTGGTAGACAAACAGACCTTGAAGCTGTGCTGCAGTGTCTTAGAGGAAGGAATGCTTCTATTTCTCAAGAAGCAGCTGGTATCATGGAGTATACAGAAATGTTTCAGAAAAACTCAGGAAGAATACTAGACTTGTTCCAGCGTAGATATACTCACTCACTGATTGTTGGAGTTGGGCTAATGTTACTACAGCAATTTTCTGGGGTCAATGCAGTAGCTTATTATGCAAGCAGTATATTTATAGATGCTGATTTTTCAAGTACCATTGGGACAATATCATTGGCTATTATTGGGGTTCCAGCAATTGCATTGAGTGTGCTCTTAACAGATAAATGCGGAAGGCGACCACTTTTAAATGTTTCTGCTGCCGGAATGTGCTTGAGTTCATTTCTTGTTGGCTTGGCTTTCTACTTCCAGGATCACGACTTGTGTGAGGAGCTCACTCCCATTTTTTTGTTTATCGGCATGATGGGATATGGTGCATCGTACTCAATTGGTATAGCTGGATTGCCCTGGGTTATTATGTCAGAGACATTCCCAGTAAACGTCAAAGGTTCAGCTGGGAGCCTGCTGAGTTTGGTATATTGGTCTTGTTCTTGGATTGTAACATATACCTTCAACTATGTGATGGAATGGAGCTCAGAAGGAACATTTTTCTTCTTCTCAGCCATTAGCATTTTGACAATTCTGTTTGTAACAACGATAGTGCCGGAAACTAAGGGGAGAAATCTAGAAGAATTACAAGCATCAATCTCCCATTTTCACTAA

Protein Analysis

463

Amino Acids

50.18

Weight (kDa)

5.04

Isoelectric Point (pI)

32.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 35 - 405 2e-27 Major Facilitator Superfamily
Sugar_tr PF00083 63 - 456 5.8e-89 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020531)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0461241
rosa_multiflora Rmu_ssc0000326.1_g000013
rosa_roxburghii Rroxscaffold_6G00418770
rosa_rugosa Rorug03G0049200
rosa_samantha Rh3BG110700 Rh3DG112500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 412
AccB1I GGYRCC 1 cut(s) 412
AccI GTMKAC 3 cut(s) 420, 631, 716
AciI CCGC 1 cut(s) 960
AclWI GGATC 2 cut(s) 453, 1050
AcsI RAATTY 1 cut(s) 162
AcuI CTGAAG 1 cut(s) 450
AfaI GTAC 6 cut(s) 286, 313, 414, 549, 886, 1112
AgsI TTSAA 5 cut(s) 191, 213, 647, 882, 1243
AjnI CCWGG 2 cut(s) 1038, 1136
Alw21I GWGCWC 3 cut(s) 945, 1065, 1265
Alw26I GTCTC 2 cut(s) 609, 1148
AlwI GGATC 2 cut(s) 453, 1050
AlwNI CAGNNNCTG 2 cut(s) 158, 481
ApeKI GCWGC 5 cut(s) 149, 478, 655, 698, 989
ApoI RAATTY 1 cut(s) 162
Asp700I GAANNNNTTC 1 cut(s) 726
Asp718I GGTACC 1 cut(s) 412
AspLEI GCGC 1 cut(s) 537
AspS9I GGNCC 1 cut(s) 178
AsuHPI GGTGA 1 cut(s) 61
AvaII GGWCC 1 cut(s) 178
BaeGI GKGCMC 1 cut(s) 92
BanI GGYRCC 1 cut(s) 412
BanII GRGCYC 2 cut(s) 1065, 1265
BarI GAAGNNNNNNTAC 2 cut(s) 12, 44
BbsI GAAGAC 2 cut(s) 177, 376
Bbv12I GWGCWC 3 cut(s) 945, 1065, 1265
BbvI GCAGC 5 cut(s) 136, 465, 642, 710, 976
BccI CCATC 4 cut(s) 44, 571, 1087, 1246
BcgI CGANNNNNNTGC 2 cut(s) 79, 113
BciT130I CCWGG 2 cut(s) 1040, 1138
BcoDI GTCTC 2 cut(s) 609, 1148
BfaI CTAG 2 cut(s) 752, 1355
BfmI CTRYAG 5 cut(s) 132, 150, 315, 656, 812
BglII AGATCT 1 cut(s) 265
BisI GCNGC 5 cut(s) 150, 479, 656, 699, 990
BlsI GCNGC 5 cut(s) 151, 480, 657, 700, 991
BmcAI AGTACT 1 cut(s) 313
Bme1390I CCNGG 2 cut(s) 1040, 1138
Bme18I GGWCC 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 178
BmiI GGNNCC 3 cut(s) 414, 921, 1190
BmrFI CCNGG 2 cut(s) 1040, 1138
BmrI ACTGGG 1 cut(s) 1157
BmsI GCATC 3 cut(s) 859, 1115, 1379
BmuI ACTGGG 1 cut(s) 1157
BpiI GAAGAC 2 cut(s) 177, 376
BplI GAGNNNNNCTC 2 cut(s) 47, 79
BpuEI CTTGAG 2 cut(s) 675, 1024
BsaJI CCNNGG 7 cut(s) 15, 63, 441, 540, 608, 1136, 1137
BsaWI WCCGGW 1 cut(s) 71
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bse1I ACTGG 2 cut(s) 127, 1163
BseBI CCWGG 2 cut(s) 1040, 1138
BseDI CCNNGG 7 cut(s) 15, 63, 441, 540, 608, 1136, 1137
BseGI GGATG 1 cut(s) 563
BseMII CTCAG 4 cut(s) 753, 1187, 1278, 1302
BseNI ACTGG 2 cut(s) 127, 1163
BseRI GAGGAG 3 cut(s) 52, 243, 1073
BseSI GKGCMC 1 cut(s) 92
BseXI GCAGC 5 cut(s) 136, 465, 642, 710, 976
BseYI CCCAGC 1 cut(s) 1184
BshNI GGYRCC 1 cut(s) 412
BsiHKAI GWGCWC 3 cut(s) 945, 1065, 1265
BsiSI CCGG 3 cut(s) 72, 993, 1334
BslFI GGGAC 1 cut(s) 907
BsmAI GTCTC 2 cut(s) 609, 1148
BsmFI GGGAC 1 cut(s) 907
BsmI GAATGC 2 cut(s) 352, 682
Bsp1286I GDGCHC 4 cut(s) 92, 945, 1065, 1265
Bsp143I GATC 3 cut(s) 265, 445, 1042
Bsp19I CCATGG 1 cut(s) 540
BspACI CCGC 1 cut(s) 960
BspCNI CTCAG 4 cut(s) 752, 1188, 1277, 1301
BspLI GGNNCC 3 cut(s) 414, 921, 1190
BspMAI CTGCAG 3 cut(s) 154, 319, 660
BspPI GGATC 2 cut(s) 453, 1050
BspT107I GGYRCC 1 cut(s) 412
BsrI ACTGG 2 cut(s) 127, 1163
BssECI CCNNGG 7 cut(s) 15, 63, 441, 540, 608, 1136, 1137
BssMI GATC 3 cut(s) 265, 445, 1042
BssNAI GTATAC 1 cut(s) 717
BssT1I CCWWGG 3 cut(s) 441, 540, 608
Bst1107I GTATAC 1 cut(s) 717
Bst2UI CCWGG 2 cut(s) 1040, 1138
Bst4CI ACNGT 6 cut(s) 16, 187, 202, 223, 375, 491
BstAPI GCANNNNNTGC 1 cut(s) 347
BstC8I GCNNGC 3 cut(s) 618, 853, 1193
BstDEI CTNAG 6 cut(s) 665, 739, 1196, 1264, 1288, 1341
BstDSI CCRYGG 2 cut(s) 15, 540
BstEII GGTNACC 1 cut(s) 67
BstF5I GGATG 1 cut(s) 563
BstHHI GCGC 1 cut(s) 537
BstKTI GATC 3 cut(s) 268, 448, 1045
BstMAI GTCTC 2 cut(s) 609, 1148
BstMBI GATC 3 cut(s) 265, 445, 1042
BstMWI GCNNNNNNNGC 3 cut(s) 107, 347, 848
BstNI CCWGG 2 cut(s) 1040, 1138
BstPI GGTNACC 1 cut(s) 67
BstSCI CCNGG 2 cut(s) 1038, 1136
BstSFI CTRYAG 5 cut(s) 132, 150, 315, 656, 812
BstSLI GKGCMC 1 cut(s) 92
BstV1I GCAGC 5 cut(s) 136, 465, 642, 710, 976
BstV2I GAAGAC 2 cut(s) 177, 376
BstX2I RGATCY 2 cut(s) 265, 445
BstYI RGATCY 2 cut(s) 265, 445
BstZ17I GTATAC 1 cut(s) 717
BtgI CCRYGG 2 cut(s) 15, 540
BtsCI GGATG 1 cut(s) 563
BtsI GCAGTG 1 cut(s) 665
BtsIMutI CAGTG 3 cut(s) 394, 665, 782
Cac8I GCNNGC 3 cut(s) 618, 853, 1193
CaiI CAGNNNCTG 2 cut(s) 158, 481
CfoI GCGC 1 cut(s) 537
Cfr13I GGNCC 1 cut(s) 178
Csp6I GTAC 6 cut(s) 285, 312, 413, 548, 885, 1111
CviAII CATG 3 cut(s) 541, 709, 1090
CviQI GTAC 6 cut(s) 285, 312, 413, 548, 885, 1111
DdeI CTNAG 6 cut(s) 665, 739, 1196, 1264, 1288, 1341
DpnI GATC 3 cut(s) 267, 447, 1044
DpnII GATC 3 cut(s) 265, 445, 1042
DraI TTTAAA 1 cut(s) 978
Ecl136II GAGCTC 2 cut(s) 1063, 1263
Eco130I CCWWGG 3 cut(s) 441, 540, 608
Eco24I GRGCYC 2 cut(s) 1065, 1265
Eco47I GGWCC 1 cut(s) 178
Eco53kI GAGCTC 2 cut(s) 1063, 1263
Eco57I CTGAAG 1 cut(s) 450
Eco91I GGTNACC 1 cut(s) 67
EcoICRI GAGCTC 2 cut(s) 1063, 1263
EcoO65I GGTNACC 1 cut(s) 67
EcoRI GAATTC 1 cut(s) 162
EcoRII CCWGG 2 cut(s) 1038, 1136
EcoT14I CCWWGG 3 cut(s) 441, 540, 608
EcoT38I GRGCYC 2 cut(s) 1065, 1265
ErhI CCWWGG 3 cut(s) 441, 540, 608
FaeI CATG 3 cut(s) 544, 712, 1093
FalI AAGNNNNNCTT 4 cut(s) 448, 480, 664, 696
FaqI GGGAC 1 cut(s) 907
FatI CATG 3 cut(s) 540, 708, 1089
FblI GTMKAC 3 cut(s) 420, 631, 716
Fnu4HI GCNGC 5 cut(s) 150, 479, 656, 699, 990
FokI GGATG 1 cut(s) 550
FriOI GRGCYC 2 cut(s) 1065, 1265
Fsp4HI GCNGC 5 cut(s) 150, 479, 656, 699, 990
FspBI CTAG 2 cut(s) 752, 1355
GlaI GCGC 1 cut(s) 536
GluI GCNGC 5 cut(s) 150, 479, 656, 699, 990
GsaI CCCAGC 1 cut(s) 1188
HapII CCGG 3 cut(s) 72, 993, 1334
HhaI GCGC 1 cut(s) 537
Hin1II CATG 3 cut(s) 544, 712, 1093
Hin6I GCGC 1 cut(s) 535
HinP1I GCGC 1 cut(s) 535
HinfI GANTC 4 cut(s) 56, 155, 384, 602
HpaII CCGG 3 cut(s) 72, 993, 1334
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 5 cut(s) 421, 462, 632, 717, 1168
Hpy188I TCNGA 4 cut(s) 275, 732, 1153, 1267
Hpy188III TCNNGA 7 cut(s) 159, 167, 599, 692, 741, 1046, 1355
Hpy8I GTNNAC 5 cut(s) 421, 462, 632, 717, 1168
HpyAV CCTTC 5 cut(s) 450, 666, 957, 1249, 1262
HpyCH4III ACNGT 6 cut(s) 16, 187, 202, 223, 375, 491
HpyCH4IV ACGT 2 cut(s) 277, 1170
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 347, 848
HpyF3I CTNAG 6 cut(s) 665, 739, 1196, 1264, 1288, 1341
HpySE526I ACGT 2 cut(s) 277, 1170
Hsp92II CATG 3 cut(s) 544, 712, 1093
HspAI GCGC 1 cut(s) 535
KpnI GGTACC 1 cut(s) 416
Kzo9I GATC 3 cut(s) 265, 445, 1042
LmnI GCTCC 3 cut(s) 1060, 1188, 1260
Lsp1109I GCAGC 5 cut(s) 136, 465, 642, 710, 976
LweI GCATC 3 cut(s) 859, 1115, 1379
MaeI CTAG 2 cut(s) 752, 1355
MaeII ACGT 2 cut(s) 277, 1170
MaeIII GTNAC 4 cut(s) 67, 807, 1228, 1318
MalI GATC 3 cut(s) 267, 447, 1044
MboI GATC 3 cut(s) 265, 445, 1042
MfeI CAATTG 2 cut(s) 927, 1116
MflI RGATCY 2 cut(s) 265, 445
MhlI GDGCHC 4 cut(s) 92, 945, 1065, 1265
MluCI AATT 7 cut(s) 162, 576, 818, 927, 1116, 1308, 1361
MlyI GAGTC 2 cut(s) 65, 611
MmeI TCCRAC 2 cut(s) 205, 772
MnlI CCTC 8 cut(s) 70, 73, 113, 221, 275, 446, 662, 1051
MroXI GAANNNNTTC 1 cut(s) 726
MseI TTAA 3 cut(s) 486, 947, 977
MspA1I CMGCKG 4 cut(s) 149, 478, 701, 1184
MspI CCGG 3 cut(s) 72, 993, 1334
MspR9I CCNGG 2 cut(s) 1040, 1138
MunI CAATTG 2 cut(s) 927, 1116
Mva1269I GAATGC 2 cut(s) 352, 682
MvaI CCWGG 2 cut(s) 1040, 1138
MwoI GCNNNNNNNGC 3 cut(s) 107, 347, 848
NcoI CCATGG 1 cut(s) 540
NdeII GATC 3 cut(s) 265, 445, 1042
NlaIII CATG 3 cut(s) 544, 712, 1093
NlaIV GGNNCC 3 cut(s) 414, 921, 1190
NmuCI GTSAC 1 cut(s) 67
PasI CCCWGGG 1 cut(s) 1137
PctI GAATGC 2 cut(s) 352, 682
PdmI GAANNNNTTC 1 cut(s) 726
PfeI GAWTC 2 cut(s) 155, 384
PflFI GACNNNGTC 1 cut(s) 37
PfoI TCCNGGA 1 cut(s) 1038
PkrI GCNGC 5 cut(s) 151, 480, 657, 700, 991
PleI GAGTC 2 cut(s) 64, 610
PpsI GAGTC 2 cut(s) 64, 610
Psp124BI GAGCTC 2 cut(s) 1065, 1265
Psp6I CCWGG 2 cut(s) 1038, 1136
PspEI GGTNACC 1 cut(s) 67
PspFI CCCAGC 1 cut(s) 1184
PspGI CCWGG 2 cut(s) 1038, 1136
PspN4I GGNNCC 3 cut(s) 414, 921, 1190
PspPI GGNCC 1 cut(s) 178
PstI CTGCAG 3 cut(s) 154, 319, 660
PstNI CAGNNNCTG 2 cut(s) 158, 481
PsuI RGATCY 2 cut(s) 265, 445
PsyI GACNNNGTC 1 cut(s) 37
PvuII CAGCTG 4 cut(s) 149, 478, 701, 1184
RsaI GTAC 6 cut(s) 286, 313, 414, 549, 886, 1112
RsaNI GTAC 6 cut(s) 285, 312, 413, 548, 885, 1111
SacI GAGCTC 2 cut(s) 1065, 1265
SaqAI TTAA 3 cut(s) 486, 947, 977
SatI GCNGC 5 cut(s) 150, 479, 656, 699, 990
Sau3AI GATC 3 cut(s) 265, 445, 1042
Sau96I GGNCC 1 cut(s) 178
ScaI AGTACT 1 cut(s) 313
SchI GAGTC 2 cut(s) 65, 611
ScrFI CCNGG 2 cut(s) 1040, 1138
SduI GDGCHC 4 cut(s) 92, 945, 1065, 1265
SfaNI GCATC 3 cut(s) 859, 1115, 1379
SfcI CTRYAG 5 cut(s) 132, 150, 315, 656, 812
SinI GGWCC 1 cut(s) 178
SmlI CTYRAG 2 cut(s) 690, 1003
SmoI CTYRAG 2 cut(s) 690, 1003
Sse9I AATT 7 cut(s) 162, 576, 818, 927, 1116, 1308, 1361
SsiI CCGC 1 cut(s) 960
SspI AATATT 1 cut(s) 306
SspMI CTAG 2 cut(s) 752, 1355
SstI GAGCTC 2 cut(s) 1065, 1265
StyD4I CCNGG 2 cut(s) 1038, 1136
StyI CCWWGG 3 cut(s) 441, 540, 608
TaaI ACNGT 6 cut(s) 16, 187, 202, 223, 375, 491
TaiI ACGT 2 cut(s) 280, 1173
TaqI TCGA 1 cut(s) 451
TaqII GACCGA 1 cut(s) 55
TasI AATT 7 cut(s) 162, 576, 818, 927, 1116, 1308, 1361
TatI WGTACW 2 cut(s) 311, 547
TfiI GAWTC 2 cut(s) 155, 384
Tru1I TTAA 3 cut(s) 486, 947, 977
Tru9I TTAA 3 cut(s) 486, 947, 977
TscAI CASTG 3 cut(s) 394, 665, 789
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 5 cut(s) 149, 478, 655, 698, 989
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 5 cut(s) 132, 231, 489, 583, 999
TspRI CASTG 3 cut(s) 394, 665, 789
Tth111I GACNNNGTC 1 cut(s) 37
VpaK11BI GGWCC 1 cut(s) 178
XapI RAATTY 1 cut(s) 162
XbaI TCTAGA 1 cut(s) 1354
XmiI GTMKAC 3 cut(s) 420, 631, 716
XmnI GAANNNNTTC 1 cut(s) 726
XspI CTAG 2 cut(s) 752, 1355
ZrmI AGTACT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.