Rh3BG110700

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0020531
Physical Location & Seq
Forward (+)
9020308 .. 9021254
947 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG110700.1

Sequence Viewer

Length: 711 bp
ATGCCTTCGGCTGGACCAAGCCCTACACCCCTTTCGAACCCTACAACTGTGGTTAGCTCACAGTTCCTGGCATCCTACCCCGTGGATCTGTACATTTCTGAGAAGCTCATCACCATTAAGGAAGGTGCCTTCACTGTCACCAATGTTGATGGCGAAGTCATGTTCACTGTAAAAGGTTCTTTTTTCAGCCTTCATGATACTCGACAATTGCTTGACAGCGCTGGTACTCCTATCCCCACCTTCCGTAAGAAGATTATTTCGATACATAGGAGATGGAAAGTATATAGAGGAGATAGCTCGAGCAGAAAAGATCTACTTTTCAGTCCCAAGAAGTCAGGGCTAGTCCAAATTAAGACTGAACTAGATGTGTTCTTGGCTACTAACACAAAGGAAGACCAGCATGATTTCAAGGTCAAAGGAAGCTTTAGGGATAAAGCATGTGTTAATGATATAGGAGTGAATTGTAATTCCAATCCTAATATTGGAGTGGAACACAACAACAATCCTATCAGAATCCAACAATTAACACCTGCCATCAAGTGTGCTTACAACATTATCAAGACACAGTCTGGGCTACAAAGCAGAATTCTGAGTAGAAAGCAGAACACACCAAGCCAAGACAAAAAGGAGCCTCTACACCAAGACAAATGTCCTCTGTGCTGTTGTAAATCACACCACAAACTCAATCGTGATATCACTGATATGTACTAA

Protein Analysis

236

Amino Acids

26.47

Weight (kDa)

9.37

Isoelectric Point (pI)

42.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 28 - 148 1.6e-28 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020531)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0461241
rosa_multiflora Rmu_ssc0000326.1_g000013
rosa_roxburghii Rroxscaffold_6G00418770
rosa_rugosa Rorug03G0049200
rosa_samantha Rh3BG110700 Rh3DG112500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 538
Acc36I ACCTGC 1 cut(s) 538
AccB1I GGYRCC 1 cut(s) 125
AclWI GGATC 1 cut(s) 93
AcsI RAATTY 1 cut(s) 585
AfaI GTAC 3 cut(s) 92, 226, 707
AfeI AGCGCT 1 cut(s) 220
AfiI CCNNNNNNNGG 2 cut(s) 11, 482
AgsI TTSAA 1 cut(s) 409
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 4 cut(s) 57, 106, 297, 423
AluI AGCT 4 cut(s) 57, 106, 297, 423
AlwI GGATC 1 cut(s) 93
AlwNI CAGNNNCTG 1 cut(s) 67
Ama87I CYCGRG 1 cut(s) 298
Aor51HI AGCGCT 1 cut(s) 220
ApoI RAATTY 1 cut(s) 585
AspLEI GCGC 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 14
AsuHPI GGTGA 2 cut(s) 103, 130
AsuII TTCGAA 1 cut(s) 35
AvaI CYCGRG 1 cut(s) 298
AvaII GGWCC 1 cut(s) 14
BanI GGYRCC 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 399
BccI CCATC 3 cut(s) 143, 267, 542
BciT130I CCWGG 1 cut(s) 68
BfaI CTAG 2 cut(s) 341, 362
BfoI RGCGCY 1 cut(s) 222
BfuAI ACCTGC 1 cut(s) 538
BglII AGATCT 1 cut(s) 310
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 1 cut(s) 14
BmeT110I CYCGRG 1 cut(s) 298
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 2 cut(s) 127, 630
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 1 cut(s) 80
BoxI GACNNNNGTC 1 cut(s) 648
BpiI GAAGAC 1 cut(s) 399
Bpu14I TTCGAA 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 81
Bsc4I CCNNNNNNNGG 2 cut(s) 11, 482
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 1 cut(s) 71
BseLI CCNNNNNNNGG 2 cut(s) 11, 482
BseMII CTCAG 2 cut(s) 90, 581
BseRI GAGGAG 1 cut(s) 303
BshNI GGYRCC 1 cut(s) 125
BsiHKCI CYCGRG 1 cut(s) 298
BslFI GGGAC 1 cut(s) 309
BslI CCNNNNNNNGG 2 cut(s) 11, 482
BsmFI GGGAC 1 cut(s) 309
BsoBI CYCGRG 1 cut(s) 298
Bsp119I TTCGAA 1 cut(s) 35
Bsp1407I TGTACA 1 cut(s) 90
Bsp143I GATC 2 cut(s) 85, 310
BspCNI CTCAG 2 cut(s) 91, 582
BspHI TCATGA 1 cut(s) 193
BspLI GGNNCC 2 cut(s) 127, 630
BspMI ACCTGC 1 cut(s) 538
BspPI GGATC 1 cut(s) 93
BspT104I TTCGAA 1 cut(s) 35
BspT107I GGYRCC 1 cut(s) 125
BsrGI TGTACA 1 cut(s) 90
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 2 cut(s) 85, 310
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 5 cut(s) 49, 63, 136, 169, 567
BstAUI TGTACA 1 cut(s) 90
BstBI TTCGAA 1 cut(s) 35
BstDEI CTNAG 2 cut(s) 99, 590
BstDSI CCRYGG 1 cut(s) 81
BstF5I GGATG 1 cut(s) 71
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 2 cut(s) 88, 313
BstMBI GATC 2 cut(s) 85, 310
BstNI CCWGG 1 cut(s) 68
BstNSI RCATGY 1 cut(s) 441
BstPAI GACNNNNGTC 1 cut(s) 648
BstSCI CCNGG 1 cut(s) 66
BstV2I GAAGAC 1 cut(s) 399
BstX2I RGATCY 2 cut(s) 85, 310
BstYI RGATCY 2 cut(s) 85, 310
BtgI CCRYGG 1 cut(s) 81
BtsCI GGATG 1 cut(s) 71
BtsIMutI CAGTG 3 cut(s) 132, 165, 696
BveI ACCTGC 1 cut(s) 538
CaiI CAGNNNCTG 1 cut(s) 67
CciI TCATGA 1 cut(s) 193
CfoI GCGC 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 14
Csp6I GTAC 3 cut(s) 91, 225, 706
CviAII CATG 4 cut(s) 160, 194, 401, 438
CviQI GTAC 3 cut(s) 91, 225, 706
DdeI CTNAG 2 cut(s) 99, 590
DpnI GATC 2 cut(s) 87, 312
DpnII GATC 2 cut(s) 85, 310
Eco32I GATATC 1 cut(s) 694
Eco47I GGWCC 1 cut(s) 14
Eco47III AGCGCT 1 cut(s) 220
Eco88I CYCGRG 1 cut(s) 298
EcoRI GAATTC 1 cut(s) 585
EcoRII CCWGG 1 cut(s) 66
EcoRV GATATC 1 cut(s) 694
FaeI CATG 4 cut(s) 163, 197, 404, 441
FaiI YATR 9 cut(s) 161, 195, 267, 283, 285, 402, 439, 452, 704
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FaqI GGGAC 1 cut(s) 309
FatI CATG 4 cut(s) 159, 193, 400, 437
FokI GGATG 1 cut(s) 58
FspBI CTAG 2 cut(s) 341, 362
GlaI GCGC 1 cut(s) 220
HaeII RGCGCY 1 cut(s) 222
HhaI GCGC 1 cut(s) 221
Hin1II CATG 4 cut(s) 163, 197, 404, 441
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HindIII AAGCTT 1 cut(s) 421
HinfI GANTC 1 cut(s) 513
HphI GGTGA 2 cut(s) 103, 130
Hpy166II GTNNAC 1 cut(s) 165
Hpy188I TCNGA 3 cut(s) 100, 512, 591
Hpy188III TCNNGA 3 cut(s) 194, 559, 689
Hpy8I GTNNAC 1 cut(s) 165
HpyAV CCTTC 5 cut(s) 15, 116, 139, 200, 250
HpyCH4III ACNGT 5 cut(s) 49, 63, 136, 169, 567
HpyF3I CTNAG 2 cut(s) 99, 590
Hsp92II CATG 4 cut(s) 163, 197, 404, 441
HspAI GCGC 1 cut(s) 219
Kzo9I GATC 2 cut(s) 85, 310
LmnI GCTCC 1 cut(s) 628
LpnPI CCDG 7 cut(s) 53, 80, 207, 321, 410, 543, 555
LweI GCATC 1 cut(s) 80
MaeI CTAG 2 cut(s) 341, 362
MaeIII GTNAC 1 cut(s) 136
MalI GATC 2 cut(s) 87, 312
MboI GATC 2 cut(s) 85, 310
MboII GAAGA 2 cut(s) 262, 404
MfeI CAATTG 1 cut(s) 206
MflI RGATCY 2 cut(s) 85, 310
MluCI AATT 6 cut(s) 206, 348, 460, 466, 521, 585
MmeI TCCRAC 1 cut(s) 541
MnlI CCTC 3 cut(s) 281, 642, 663
MseI TTAA 4 cut(s) 117, 351, 444, 524
MslI CAYNNNNRTG 1 cut(s) 701
MspR9I CCNGG 1 cut(s) 68
MunI CAATTG 1 cut(s) 206
MvaI CCWGG 1 cut(s) 68
NdeII GATC 2 cut(s) 85, 310
NlaIII CATG 4 cut(s) 163, 197, 404, 441
NlaIV GGNNCC 2 cut(s) 127, 630
NmuCI GTSAC 1 cut(s) 136
NspI RCATGY 1 cut(s) 441
NspV TTCGAA 1 cut(s) 35
PaeR7I CTCGAG 1 cut(s) 298
PagI TCATGA 1 cut(s) 193
PaqCI CACCTGC 1 cut(s) 538
PfeI GAWTC 1 cut(s) 513
PflFI GACNNNGTC 1 cut(s) 565
PshAI GACNNNNGTC 1 cut(s) 648
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 127, 630
PspPI GGNCC 1 cut(s) 14
PspXI VCTCGAGB 1 cut(s) 298
PstNI CAGNNNCTG 1 cut(s) 67
PsuI RGATCY 2 cut(s) 85, 310
PsyI GACNNNGTC 1 cut(s) 565
RsaI GTAC 3 cut(s) 92, 226, 707
RsaNI GTAC 3 cut(s) 91, 225, 706
RseI CAYNNNNRTG 1 cut(s) 701
SaqAI TTAA 4 cut(s) 117, 351, 444, 524
Sau3AI GATC 2 cut(s) 85, 310
Sau96I GGNCC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 68
SetI ASST 9 cut(s) 59, 108, 127, 178, 242, 299, 414, 425, 532
SfaNI GCATC 1 cut(s) 80
Sfr274I CTCGAG 1 cut(s) 298
SfuI TTCGAA 1 cut(s) 35
SinI GGWCC 1 cut(s) 14
SlaI CTCGAG 1 cut(s) 298
SmiMI CAYNNNNRTG 1 cut(s) 701
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
Sse9I AATT 6 cut(s) 206, 348, 460, 466, 521, 585
SspI AATATT 1 cut(s) 481
SspMI CTAG 2 cut(s) 341, 362
StyD4I CCNGG 1 cut(s) 66
TaaI ACNGT 5 cut(s) 49, 63, 136, 169, 567
TaqI TCGA 4 cut(s) 35, 202, 260, 299
TasI AATT 6 cut(s) 206, 348, 460, 466, 521, 585
TatI WGTACW 2 cut(s) 90, 705
TfiI GAWTC 1 cut(s) 513
Tru1I TTAA 4 cut(s) 117, 351, 444, 524
Tru9I TTAA 4 cut(s) 117, 351, 444, 524
TscAI CASTG 3 cut(s) 139, 172, 703
TseFI GTSAC 1 cut(s) 136
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 1 cut(s) 182
TspGWI ACGGA 1 cut(s) 233
TspRI CASTG 3 cut(s) 139, 172, 703
Tth111I GACNNNGTC 1 cut(s) 565
VpaK11BI GGWCC 1 cut(s) 14
XapI RAATTY 1 cut(s) 585
XceI RCATGY 1 cut(s) 441
XhoI CTCGAG 1 cut(s) 298
XspI CTAG 2 cut(s) 341, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.