Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011071

Physical Location & Seq

Genomic Coordinates Forward (+)

15161889 .. 15167019

Gene Structure 5131 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1626 bp

ATGATCAACACCGCCAACGGTATGATGTCATCAACGACTTCGTCGTCGTCGGCCAACAACAGCGCTCAGTCGCCGGGGCTCAAGACCTATTTCAAGACCCCCGAGGGAAGGTACAAGCTTCACTACGAGAAGGCTCACCCTTCCGGTCTTCTTCACTACCCTCATGGCAAAACTGTCACTCAGGTAACGTTAGCGCATCTTAAGGACAAGCCTGCCCCAACAACCCCGACCGCACCATCTTCAAGCTTCAGCACTAGCGGTGGTGTGCGGTCAGCTGCAGCAAGGTTGTTGGGTGCTAGTAATGGGAGCAGGCTTAGCTTTGTTGCAGGGAATGGGGCGAGTAAGAGTGTTAGCGCGAGTAGTAGAGTTGGGTCTTTGGTGGCTTCCAGTTCAAGTAATTCAACTTCTACTTCCAACTTTGATGGGAAAGGGTCTTACTTGATCTTCAATGTGGGAGATGCAATCTTCATTAGTGATTTGAATACTCAAGACAAGGATCCAATAAAGTCTTTACATTTCAGTACTTCAAACCCTGTGTGCCATGCATTTGATCAAGATGCAAAGGATGGTCATGATTTGATTATTGGATTGAATTCTGGCGATGTCTACTCAGTGTCACTGAGACAACAATTACAGGATGTTGGAAAGAAGCTTGTTGGTGCTCAGCATTATAACAAAGATGGTTCTGTTAGTAATAGCCGTTGTACTAGTATTGCATGGGTTCCTGGTGGTGATGGCTCTTTTGTTGTTGCTCATGCTGATGGGAATCTGTATAGCAAAGATGGTGCAGGCGATACTTCTTTCCCTGTTATAAAAGATCAATCTCAATTTTCTGTTGCACATGCACGTTACAGTAAGAGTAACCCAATTGCCAGATGGCATATATGCTTAGGTTCAATTAATAGTATTGCTTTCTCAACTGATGGAGCTTATCTAGCAACTGTTGGAAGAGATGGTTATCTACGTGTTTTTGACTACTCAAAAGAGCAACTTGTATGTGGTGGCAAAAGTTACTATGGTGCTCAGCTATGTTGCGCTTGGAGCGCGGATGGAAAATACATACTGGCAGGAGGTGAAGATGATCTGGTTCAAGTTTGGAGTATGGAAGATCGGAAAGTTGTAGCTTGGGGAGAGGGGCACAATTCTTGGGTCAGTGGAGTGGCGTTTGACTCATATTCAGAAGGTATCGGGGAAACTGTCATGTACCGGTTTGGTTCCGTCGGTCAGGACACACAGTTACTTCTGTGGGACCTGGAAATGGATGAGATTGTGGTGCCATTGCGCCGATGCCCTCCAGGTGGCTCCCCCACATATAGTACCGGAAGCCAGTCATCTCATTGGGACAATGCACTACCAGTGGGTACGTTGCAGCCTGCTCCAAGCATGCGAGATGTTCCAAAGATCTCACCGCTTGTTGCTCACCGTGTGCACACTGAACCTCTCTCCGGCGTGATGTTTACACAAGAATCTGTTCTTACTGTCTGCCGAGAAGGGAATATTAAAATTTGGATGAGACCTGGGGTTTCAGAAAGCCAATCAAGCAATGGGGAAACCGTGTTAAGTCCCAGCTTGAAGGAGAAACCTTTGCTGTCAAGCAAGGTTGGCAGTGTCAGTCATAAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0007154 GO:0007584 GO:0008150 GO:0009605 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0042221 GO:0045013 GO:0045892 GO:0045934 GO:0045990 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061984 GO:0061985 GO:0065007 GO:0070887 GO:0071496 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

541

Amino Acids

57.65

Weight (kDa)

7.27

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_1st	PF25173	287 - 423	6.2e-11	WDR3 first beta-propeller domain
WDR55	PF24796	290 - 391	1.7e-06	WDR55
Beta-prop_TEP1_2nd	PF25047	297 - 420	8.2e-09	TEP-1 second beta-propeller
Beta-prop_WDR5	PF25175	299 - 420	1.6e-13	WDR5 beta-propeller domain
WD40_MABP1-WDR62_1st	PF24780	299 - 390	6e-06	MABP1/WDR62 first WD40 domain
Beta-prop_EML_2	PF23414	303 - 391	2.4e-07	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_THOC3	PF25174	344 - 424	2.4e-08	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37160 AT2G37160 AT3G53390
fragaria_vesca	FvH4_6g15710 FvH4_6g15710
malus_domestica	MD04G1099900.v1.1 MD12G1120000.v1.1
prunus_persica	Prupe.6G238200_v2.0.a1
pyrus_communis	pycom04g09500 pycom12g11890
rosa_chinensis	RchiOBHm_Chr3g0469411
rosa_laevigata	RLG00000024351
rosa_multiflora	Rmu_sc0005274.1_g000009
rosa_roxburghii	Rroxscaffold_6G00411910
rosa_rugosa	Rorug03G0101600
rosa_samantha	Rh3AG150600 Rh3BG174300 Rh3CG165300 Rh3DG201100
rosa_wichuraiana	Rw3G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	672, 812
AasI	GACNNNNNNGTC	1 cut(s)	43
AccB1I	GGYRCC	1 cut(s)	1273
AccI	GTMKAC	1 cut(s)	606
AccII	CGCG	2 cut(s)	356, 1046
AciI	CCGC	6 cut(s)	12, 231, 258, 268, 1046, 1409
AclI	AACGTT	1 cut(s)	188
AclWI	GGATC	2 cut(s)	491, 504
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	2 cut(s)	592, 1503
AcuI	CTGAAG	1 cut(s)	232
AdeI	CACNNNGTG	1 cut(s)	1426
AfaI	GTAC	6 cut(s)	113, 523, 706, 1205, 1318, 1363
AfeI	AGCGCT	1 cut(s)	64
AfiI	CCNNNNNNNGG	4 cut(s)	108, 1258, 1298, 1445
AflII	CTTAAG	1 cut(s)	200
AflIII	ACRYGT	1 cut(s)	964
AgeI	ACCGGT	1 cut(s)	1206
AhlI	ACTAGT	1 cut(s)	707
AjnI	CCWGG	4 cut(s)	724, 1251, 1294, 1516
AluBI	AGCT	9 cut(s)	118, 246, 275, 318, 652, 929, 1027, 1124, 1569
AluI	AGCT	9 cut(s)	118, 246, 275, 318, 652, 929, 1027, 1124, 1569
Alw21I	GWGCWC	3 cut(s)	664, 1024, 1431
Alw26I	GTCTC	2 cut(s)	616, 1507
Alw44I	GTGCAC	1 cut(s)	1427
AlwI	GGATC	2 cut(s)	491, 504
Ama87I	CYCGRG	1 cut(s)	101
Aor51HI	AGCGCT	1 cut(s)	64
AoxI	GGCC	1 cut(s)	51
ApaLI	GTGCAC	1 cut(s)	1427
ApeKI	GCWGC	3 cut(s)	275, 278, 1369
ApoI	RAATTY	2 cut(s)	592, 1503
AseI	ATTAAT	1 cut(s)	900
AsiGI	ACCGGT	1 cut(s)	1206
Asp700I	GAANNNNTTC	1 cut(s)	1470
AspLEI	GCGC	6 cut(s)	65, 196, 356, 1037, 1046, 1284
AspS9I	GGNCC	1 cut(s)	1249
AsuC2I	CCSGG	1 cut(s)	75
AsuHPI	GGTGA	5 cut(s)	128, 743, 1085, 1398, 1412
AvaI	CYCGRG	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	1249
BaeGI	GKGCMC	2 cut(s)	1140, 1431
BamHI	GGATCC	1 cut(s)	496
BanI	GGYRCC	1 cut(s)	1273
BanII	GRGCYC	1 cut(s)	81
BarI	GAAGNNNNNNTAC	2 cut(s)	388, 420
BbsI	GAAGAC	1 cut(s)	140
Bbv12I	GWGCWC	3 cut(s)	664, 1024, 1431
BbvI	GCAGC	3 cut(s)	262, 290, 1381
BceAI	ACGGC	1 cut(s)	684
BciT130I	CCWGG	4 cut(s)	726, 1253, 1296, 1518
BclI	TGATCA	2 cut(s)	3, 550
BcnI	CCSGG	1 cut(s)	75
BcoDI	GTCTC	2 cut(s)	616, 1507
BcuI	ACTAGT	1 cut(s)	707
BfaI	CTAG	4 cut(s)	255, 297, 708, 935
BfmI	CTRYAG	1 cut(s)	276
BfoI	RGCGCY	1 cut(s)	66
BfrI	CTTAAG	1 cut(s)	200
BglII	AGATCT	1 cut(s)	1401
BisI	GCNGC	3 cut(s)	276, 279, 1370
BlpI	GCTNAGC	3 cut(s)	314, 663, 1023
BlsI	GCNGC	3 cut(s)	277, 280, 1371
BmcAI	AGTACT	1 cut(s)	523
Bme1390I	CCNGG	5 cut(s)	75, 726, 1253, 1296, 1518
Bme18I	GGWCC	1 cut(s)	1249
BmeT110I	CYCGRG	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	1249
BmiI	GGNNCC	6 cut(s)	498, 723, 1216, 1250, 1275, 1303
BmrFI	CCNGG	5 cut(s)	75, 726, 1253, 1296, 1518
BmsI	GCATC	4 cut(s)	205, 448, 547, 1277
BpiI	GAAGAC	1 cut(s)	140
BpmI	CTGGAG	1 cut(s)	1278
Bpu10I	CCTNAGC	1 cut(s)	889
Bpu1102I	GCTNAGC	3 cut(s)	314, 663, 1023
BpuEI	CTTGAG	2 cut(s)	65, 471
BpuMI	CCSGG	1 cut(s)	75
BsaAI	YACGTR	1 cut(s)	965
BsaBI	GATNNNNATC	2 cut(s)	765, 957
BsaI	GGTCTC	1 cut(s)	1507
BsaJI	CCNNGG	3 cut(s)	74, 102, 1517
BsaWI	WCCGGW	3 cut(s)	143, 1206, 1319
Bsc4I	CCNNNNNNNGG	4 cut(s)	108, 1258, 1298, 1445
Bse118I	RCCGGY	1 cut(s)	1206
Bse1I	ACTGG	4 cut(s)	387, 1068, 1327, 1355
Bse3DI	GCAATG	2 cut(s)	1277, 1549
Bse8I	GATNNNNATC	2 cut(s)	765, 957
BseBI	CCWGG	4 cut(s)	726, 1253, 1296, 1518
BseDI	CCNNGG	3 cut(s)	74, 102, 1517
BseGI	GGATG	5 cut(s)	571, 643, 1054, 1267, 1515
BseJI	GATNNNNATC	2 cut(s)	765, 957
BseLI	CCNNNNNNNGG	4 cut(s)	108, 1258, 1298, 1445
BseMI	GCAATG	2 cut(s)	1277, 1549
BseMII	CTCAG	6 cut(s)	80, 194, 611, 624, 677, 1037
BseNI	ACTGG	4 cut(s)	387, 1068, 1327, 1355
BseSI	GKGCMC	2 cut(s)	1140, 1431
BseXI	GCAGC	3 cut(s)	262, 290, 1381
BseYI	CCCAGC	1 cut(s)	1565
BsgI	GTGCAG	1 cut(s)	807
Bsh1236I	CGCG	2 cut(s)	356, 1046
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	53
BshNI	GGYRCC	1 cut(s)	1273
BshTI	ACCGGT	1 cut(s)	1206
BsiEI	CGRYCG	1 cut(s)	231
BsiHKAI	GWGCWC	3 cut(s)	664, 1024, 1431
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	5 cut(s)	74, 144, 1207, 1320, 1446
BslFI	GGGAC	3 cut(s)	1262, 1355, 1548
BslI	CCNNNNNNNGG	4 cut(s)	108, 1258, 1298, 1445
BsmAI	GTCTC	2 cut(s)	616, 1507
BsmFI	GGGAC	3 cut(s)	1262, 1355, 1548
BsnI	GGCC	1 cut(s)	53
Bso31I	GGTCTC	1 cut(s)	1507
BsoBI	CYCGRG	1 cut(s)	101
Bsp1286I	GDGCHC	5 cut(s)	81, 664, 1024, 1140, 1431
Bsp143I	GATC	8 cut(s)	3, 441, 496, 550, 817, 1081, 1108, 1401
Bsp1720I	GCTNAGC	3 cut(s)	314, 663, 1023
BspACI	CCGC	6 cut(s)	12, 231, 258, 268, 1046, 1409
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	6 cut(s)	79, 193, 612, 623, 676, 1036
BspFNI	CGCG	2 cut(s)	356, 1046
BspHI	TCATGA	1 cut(s)	571
BspLI	GGNNCC	6 cut(s)	498, 723, 1216, 1250, 1275, 1303
BspMAI	CTGCAG	1 cut(s)	280
BspPI	GGATC	2 cut(s)	491, 504
BspT107I	GGYRCC	1 cut(s)	1273
BspTI	CTTAAG	1 cut(s)	200
BspTNI	GGTCTC	1 cut(s)	1507
BsrDI	GCAATG	2 cut(s)	1277, 1549
BsrFI	RCCGGY	1 cut(s)	1206
BsrI	ACTGG	4 cut(s)	387, 1068, 1327, 1355
BssAI	RCCGGY	1 cut(s)	1206
BssECI	CCNNGG	3 cut(s)	74, 102, 1517
BssMI	GATC	8 cut(s)	3, 441, 496, 550, 817, 1081, 1108, 1401
Bst2UI	CCWGG	4 cut(s)	726, 1253, 1296, 1518
Bst4CI	ACNGT	9 cut(s)	20, 175, 854, 943, 1198, 1236, 1424, 1480, 1555
Bst6I	CTCTTC	1 cut(s)	943
BstAFI	CTTAAG	1 cut(s)	200
BstBAI	YACGTR	1 cut(s)	965
BstC8I	GCNNGC	5 cut(s)	213, 311, 790, 1374, 1385
BstDEI	CTNAG	8 cut(s)	66, 180, 314, 610, 620, 663, 889, 1023
BstF5I	GGATG	5 cut(s)	571, 643, 1054, 1267, 1515
BstFNI	CGCG	2 cut(s)	356, 1046
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	6 cut(s)	65, 196, 356, 1037, 1046, 1284
BstKTI	GATC	8 cut(s)	6, 444, 499, 553, 820, 1084, 1111, 1404
BstMAI	GTCTC	2 cut(s)	616, 1507
BstMBI	GATC	8 cut(s)	3, 441, 496, 550, 817, 1081, 1108, 1401
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	6 cut(s)	315, 935, 1041, 1043, 1539, 1602
BstNI	CCWGG	4 cut(s)	726, 1253, 1296, 1518
BstNSI	RCATGY	2 cut(s)	845, 1387
BstSCI	CCNGG	5 cut(s)	73, 724, 1251, 1294, 1516
BstSFI	CTRYAG	1 cut(s)	276
BstSLI	GKGCMC	2 cut(s)	1140, 1431
BstUI	CGCG	2 cut(s)	356, 1046
BstV1I	GCAGC	3 cut(s)	262, 290, 1381
BstV2I	GAAGAC	1 cut(s)	140
BstX2I	RGATCY	2 cut(s)	496, 1401
BstYI	RGATCY	2 cut(s)	496, 1401
BsuRI	GGCC	1 cut(s)	53
BtgZI	GCGATG	1 cut(s)	615
BtsCI	GGATG	5 cut(s)	571, 643, 1054, 1267, 1515
BtsI	GCAGTG	1 cut(s)	1612
BtsIMutI	CAGTG	6 cut(s)	617, 618, 1159, 1362, 1431, 1612
Cac8I	GCNNGC	5 cut(s)	213, 311, 790, 1374, 1385
CciI	TCATGA	1 cut(s)	571
CfoI	GCGC	6 cut(s)	65, 196, 356, 1037, 1046, 1284
Cfr10I	RCCGGY	1 cut(s)	1206
Cfr13I	GGNCC	1 cut(s)	1249
Csp6I	GTAC	6 cut(s)	112, 522, 705, 1204, 1317, 1362
CspAI	ACCGGT	1 cut(s)	1206
CviAII	CATG	8 cut(s)	164, 542, 572, 717, 755, 842, 1201, 1384
CviQI	GTAC	6 cut(s)	112, 522, 705, 1204, 1317, 1362
DdeI	CTNAG	8 cut(s)	66, 180, 314, 610, 620, 663, 889, 1023
DpnI	GATC	8 cut(s)	5, 443, 498, 552, 819, 1083, 1110, 1403
DpnII	GATC	8 cut(s)	3, 441, 496, 550, 817, 1081, 1108, 1401
DraIII	CACNNNGTG	1 cut(s)	1426
DrdI	GACNNNNNNGTC	1 cut(s)	43
DseDI	GACNNNNNNGTC	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	943
EarI	CTCTTC	1 cut(s)	943
Eco24I	GRGCYC	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	1507
Eco47I	GGWCC	1 cut(s)	1249
Eco47III	AGCGCT	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	232
Eco88I	CYCGRG	1 cut(s)	101
EcoO109I	RGGNCCY	1 cut(s)	1249
EcoRI	GAATTC	1 cut(s)	592
EcoRII	CCWGG	4 cut(s)	724, 1251, 1294, 1516
EcoT22I	ATGCAT	1 cut(s)	547
EcoT38I	GRGCYC	1 cut(s)	81
FaeI	CATG	8 cut(s)	167, 545, 575, 720, 758, 845, 1204, 1387
FalI	AAGNNNNNCTT	2 cut(s)	975, 1007
FaqI	GGGAC	3 cut(s)	1262, 1355, 1548
FatI	CATG	8 cut(s)	163, 541, 571, 716, 754, 841, 1200, 1383
FbaI	TGATCA	2 cut(s)	3, 550
FblI	GTMKAC	1 cut(s)	606
Fnu4HI	GCNGC	3 cut(s)	276, 279, 1370
FokI	GGATG	5 cut(s)	578, 650, 1061, 1274, 1522
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	3 cut(s)	276, 279, 1370
FspBI	CTAG	4 cut(s)	255, 297, 708, 935
GlaI	GCGC	6 cut(s)	64, 195, 355, 1036, 1045, 1283
GluI	GCNGC	3 cut(s)	276, 279, 1370
GsaI	CCCAGC	1 cut(s)	1569
GsuI	CTGGAG	1 cut(s)	1278
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	5 cut(s)	74, 144, 1207, 1320, 1446
HhaI	GCGC	6 cut(s)	65, 196, 356, 1037, 1046, 1284
Hin1II	CATG	8 cut(s)	167, 545, 575, 720, 758, 845, 1204, 1387
Hin6I	GCGC	6 cut(s)	63, 194, 354, 1035, 1044, 1282
HinP1I	GCGC	6 cut(s)	63, 194, 354, 1035, 1044, 1282
HindIII	AAGCTT	3 cut(s)	116, 244, 650
HinfI	GANTC	3 cut(s)	766, 1169, 1466
HpaII	CCGG	5 cut(s)	74, 144, 1207, 1320, 1446
HphI	GGTGA	5 cut(s)	128, 743, 1085, 1398, 1412
Hpy166II	GTNNAC	3 cut(s)	607, 1429, 1458
Hpy188I	TCNGA	3 cut(s)	1113, 1180, 1528
Hpy188III	TCNNGA	6 cut(s)	82, 94, 488, 554, 572, 1226
Hpy8I	GTNNAC	3 cut(s)	607, 1429, 1458
Hpy99I	CGWCG	4 cut(s)	46, 49, 52, 1223
HpyAV	CCTTC	6 cut(s)	102, 124, 150, 1175, 1484, 1567
HpyCH4III	ACNGT	9 cut(s)	20, 175, 854, 943, 1198, 1236, 1424, 1480, 1555
HpyCH4IV	ACGT	4 cut(s)	188, 847, 964, 1364
HpyF10VI	GCNNNNNNNGC	6 cut(s)	315, 935, 1041, 1043, 1539, 1602
HpyF3I	CTNAG	8 cut(s)	66, 180, 314, 610, 620, 663, 889, 1023
HpySE526I	ACGT	4 cut(s)	188, 847, 964, 1364
Hsp92II	CATG	8 cut(s)	167, 545, 575, 720, 758, 845, 1204, 1387
HspAI	GCGC	6 cut(s)	63, 194, 354, 1035, 1044, 1282
Ksp22I	TGATCA	2 cut(s)	3, 550
Kzo9I	GATC	8 cut(s)	3, 441, 496, 550, 817, 1081, 1108, 1401
LmnI	GCTCC	5 cut(s)	306, 926, 1041, 1307, 1381
Lsp1109I	GCAGC	3 cut(s)	262, 290, 1381
LweI	GCATC	4 cut(s)	205, 448, 547, 1277
MaeI	CTAG	4 cut(s)	255, 297, 708, 935
MaeII	ACGT	4 cut(s)	188, 847, 964, 1364
MaeIII	GTNAC	7 cut(s)	175, 184, 615, 848, 860, 1010, 1236
MalI	GATC	8 cut(s)	5, 443, 498, 552, 819, 1083, 1110, 1403
MboI	GATC	8 cut(s)	3, 441, 496, 550, 817, 1081, 1108, 1401
MboII	GAAGA	8 cut(s)	140, 143, 231, 436, 457, 960, 1088, 1118
MfeI	CAATTG	1 cut(s)	867
MflI	RGATCY	2 cut(s)	496, 1401
MhlI	GDGCHC	5 cut(s)	81, 664, 1024, 1140, 1431
MluCI	AATT	8 cut(s)	397, 592, 629, 827, 867, 897, 1141, 1503
MlyI	GAGTC	1 cut(s)	1163
MmeI	TCCRAC	3 cut(s)	438, 622, 925
MnlI	CCTC	6 cut(s)	97, 171, 1064, 1126, 1302, 1449
Mph1103I	ATGCAT	1 cut(s)	547
MroXI	GAANNNNTTC	1 cut(s)	1470
MseI	TTAA	4 cut(s)	201, 900, 1500, 1559
MslI	CAYNNNNRTG	1 cut(s)	759
MspA1I	CMGCKG	1 cut(s)	275
MspCI	CTTAAG	1 cut(s)	200
MspI	CCGG	5 cut(s)	74, 144, 1207, 1320, 1446
MspR9I	CCNGG	5 cut(s)	75, 726, 1253, 1296, 1518
MunI	CAATTG	1 cut(s)	867
MvaI	CCWGG	4 cut(s)	726, 1253, 1296, 1518
MvnI	CGCG	2 cut(s)	356, 1046
MwoI	GCNNNNNNNGC	6 cut(s)	315, 935, 1041, 1043, 1539, 1602
NciI	CCSGG	1 cut(s)	75
NdeII	GATC	8 cut(s)	3, 441, 496, 550, 817, 1081, 1108, 1401
NlaIII	CATG	8 cut(s)	167, 545, 575, 720, 758, 845, 1204, 1387
NlaIV	GGNNCC	6 cut(s)	498, 723, 1216, 1250, 1275, 1303
NmeAIII	GCCGAG	1 cut(s)	1511
NmuCI	GTSAC	2 cut(s)	175, 615
NsiI	ATGCAT	1 cut(s)	547
NspI	RCATGY	2 cut(s)	845, 1387
PaeI	GCATGC	1 cut(s)	1387
PagI	TCATGA	1 cut(s)	571
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PdmI	GAANNNNTTC	1 cut(s)	1470
PfeI	GAWTC	2 cut(s)	766, 1466
PflFI	GACNNNGTC	1 cut(s)	40
PinAI	ACCGGT	1 cut(s)	1206
PkrI	GCNGC	3 cut(s)	277, 280, 1371
PleI	GAGTC	1 cut(s)	1163
PpsI	GAGTC	1 cut(s)	1163
Ppu21I	YACGTR	1 cut(s)	965
PpuMI	RGGWCCY	1 cut(s)	1249
PshBI	ATTAAT	1 cut(s)	900
PsiI	TTATAA	2 cut(s)	672, 812
Psp1406I	AACGTT	1 cut(s)	188
Psp5II	RGGWCCY	1 cut(s)	1249
Psp6I	CCWGG	4 cut(s)	724, 1251, 1294, 1516
PspFI	CCCAGC	1 cut(s)	1565
PspGI	CCWGG	4 cut(s)	724, 1251, 1294, 1516
PspN4I	GGNNCC	6 cut(s)	498, 723, 1216, 1250, 1275, 1303
PspPI	GGNCC	1 cut(s)	1249
PspPPI	RGGWCCY	1 cut(s)	1249
PstI	CTGCAG	1 cut(s)	280
PsuI	RGATCY	2 cut(s)	496, 1401
PsyI	GACNNNGTC	1 cut(s)	40
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	6 cut(s)	113, 523, 706, 1205, 1318, 1363
RsaNI	GTAC	6 cut(s)	112, 522, 705, 1204, 1317, 1362
RseI	CAYNNNNRTG	1 cut(s)	759
SaqAI	TTAA	4 cut(s)	201, 900, 1500, 1559
SatI	GCNGC	3 cut(s)	276, 279, 1370
Sau3AI	GATC	8 cut(s)	3, 441, 496, 550, 817, 1081, 1108, 1401
Sau96I	GGNCC	1 cut(s)	1249
ScaI	AGTACT	1 cut(s)	523
SchI	GAGTC	1 cut(s)	1163
ScrFI	CCNGG	5 cut(s)	75, 726, 1253, 1296, 1518
SduI	GDGCHC	5 cut(s)	81, 664, 1024, 1140, 1431
SfaNI	GCATC	4 cut(s)	205, 448, 547, 1277
SfcI	CTRYAG	1 cut(s)	276
SinI	GGWCC	1 cut(s)	1249
SmiMI	CAYNNNNRTG	1 cut(s)	759
SmlI	CTYRAG	3 cut(s)	80, 200, 486
SmoI	CTYRAG	3 cut(s)	80, 200, 486
SpeI	ACTAGT	1 cut(s)	707
SphI	GCATGC	1 cut(s)	1387
Sse9I	AATT	8 cut(s)	397, 592, 629, 827, 867, 897, 1141, 1503
SsiI	CCGC	6 cut(s)	12, 231, 258, 268, 1046, 1409
SspI	AATATT	1 cut(s)	1498
SspMI	CTAG	4 cut(s)	255, 297, 708, 935
StyD4I	CCNGG	5 cut(s)	73, 724, 1251, 1294, 1516
TaaI	ACNGT	9 cut(s)	20, 175, 854, 943, 1198, 1236, 1424, 1480, 1555
TaiI	ACGT	4 cut(s)	191, 850, 967, 1367
TaqII	GACCGA	1 cut(s)	1211
TasI	AATT	8 cut(s)	397, 592, 629, 827, 867, 897, 1141, 1503
TatI	WGTACW	2 cut(s)	521, 704
TfiI	GAWTC	2 cut(s)	766, 1466
Tru1I	TTAA	4 cut(s)	201, 900, 1500, 1559
Tru9I	TTAA	4 cut(s)	201, 900, 1500, 1559
TscAI	CASTG	6 cut(s)	618, 624, 1159, 1362, 1438, 1612
TseFI	GTSAC	2 cut(s)	175, 615
TseI	GCWGC	3 cut(s)	275, 278, 1369
Tsp45I	GTSAC	2 cut(s)	175, 615
TspDTI	ATGAA	1 cut(s)	457
TspGWI	ACGGA	1 cut(s)	1207
TspRI	CASTG	6 cut(s)	618, 624, 1159, 1362, 1438, 1612
Tth111I	GACNNNGTC	1 cut(s)	40
Vha464I	CTTAAG	1 cut(s)	200
VneI	GTGCAC	1 cut(s)	1427
VpaK11BI	GGWCC	1 cut(s)	1249
VspI	ATTAAT	1 cut(s)	900
XapI	RAATTY	2 cut(s)	592, 1503
XceI	RCATGY	2 cut(s)	845, 1387
XcmI	CCANNNNNNNNNTGG	2 cut(s)	873, 1541
XmiI	GTMKAC	1 cut(s)	606
XmnI	GAANNNNTTC	1 cut(s)	1470
XspI	CTAG	4 cut(s)	255, 297, 708, 935
ZrmI	AGTACT	1 cut(s)	523
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.