RchiOBHm_Chr3g0472501

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0008774
Physical Location & Seq
Reverse (-)
18395792 .. 18397856
2065 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 648 bp
ATGGCTTCAAGCTCAGACGACGACTTCATCACCGTCGTATGCACAAACCCCAAAGCGGTCACCACCACCACCACCGCCGCTGCGGAGAGAGAAGTTCTTATCTCAGTCTCAGATATCCAAAGCTGGGATTTGCCAGCAATTCTCTATTGCCAAACACTCAAAGTTAAAGCTCATCGGAACAGGCTTATCCAGCACTCTTCTTATTTCCATGGACTCCTAAGCGGCAGCTTCAGCGAATCGGGCCTGGACTGTATAGCAATTGAGTGGAACCTGGAAACGTTTGTAGATGTTCTGAATTGTATATACGGCTGCCCCTTGGATGTTACATTTGATAATTTTCTCCCTCTTATTGAGGGTGCACTTTACTTTGGAGTGGAGATGCTGCTCACGAAATGTAAAACTTGGTTTTCTGAGGTGGCATCATCGGAGGTGCCACCACAAATGCAATTGGATGATTTGATTTATATTTGGAGCTTTGGTTTAGAGCACGCCTGTGATTTTCTTCCAGAATTGTGTGCGAGCTATCTTGCGAGAAATTTTATGTGGGCCATATCTGTGAATTGTTTTGTAGATATTCCATACGAATTATTATTATCTTGTGTGAAGAACATAAATTTGACAGTGGATAGGTTAGTTATCCTTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BACK BTB

Protein Analysis

215

Amino Acids

24.16

Weight (kDa)

4.45

Isoelectric Point (pI)

31.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB PF00651 47 - 134 3.4e-11 BTB/POZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 430
AciI CCGC 5 cut(s) 56, 75, 78, 83, 222
AclI AACGTT 1 cut(s) 278
AcsI RAATTY 2 cut(s) 535, 613
AcuI CTGAAG 1 cut(s) 214
AfiI CCNNNNNNNGG 2 cut(s) 55, 124
AgsI TTSAA 1 cut(s) 9
AjnI CCWGG 2 cut(s) 243, 270
AleI CACNNNNGTG 1 cut(s) 492
AluBI AGCT 6 cut(s) 12, 123, 170, 228, 474, 522
AluI AGCT 6 cut(s) 12, 123, 170, 228, 474, 522
Alw21I GWGCWC 2 cut(s) 361, 489
Alw26I GTCTC 1 cut(s) 112
Alw44I GTGCAC 1 cut(s) 357
AoxI GGCC 2 cut(s) 241, 546
ApaLI GTGCAC 1 cut(s) 357
ApeKI GCWGC 4 cut(s) 80, 225, 309, 382
ApoI RAATTY 2 cut(s) 535, 613
AspS9I GGNCC 2 cut(s) 241, 546
AsuHPI GGTGA 2 cut(s) 22, 52
BaeGI GKGCMC 1 cut(s) 361
BanI GGYRCC 1 cut(s) 430
Bbv12I GWGCWC 2 cut(s) 361, 489
BbvI GCAGC 4 cut(s) 67, 237, 296, 369
BceAI ACGGC 1 cut(s) 322
BciT130I CCWGG 2 cut(s) 245, 272
BcoDI GTCTC 1 cut(s) 112
BisI GCNGC 6 cut(s) 78, 81, 223, 226, 310, 383
BlsI GCNGC 6 cut(s) 79, 82, 224, 227, 311, 384
Bme1390I CCNGG 2 cut(s) 245, 272
BmgT120I GGNCC 2 cut(s) 241, 546
BmiI GGNNCC 2 cut(s) 269, 432
BmrFI CCNGG 2 cut(s) 245, 272
BmsI GCATC 2 cut(s) 369, 428
Bpu10I CCTNAGC 1 cut(s) 218
BsaJI CCNNGG 2 cut(s) 208, 315
BsaXI ACNNNNNCTCC 2 cut(s) 463, 493
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 124
BseBI CCWGG 2 cut(s) 245, 272
BseDI CCNNGG 2 cut(s) 208, 315
BseGI GGATG 2 cut(s) 325, 457
BseLI CCNNNNNNNGG 2 cut(s) 55, 124
BseMII CTCAG 4 cut(s) 27, 117, 123, 402
BseSI GKGCMC 1 cut(s) 361
BseXI GCAGC 4 cut(s) 67, 237, 296, 369
BseYI CCCAGC 1 cut(s) 123
BshFI GGCC 2 cut(s) 243, 548
BshNI GGYRCC 1 cut(s) 430
BsiHKAI GWGCWC 2 cut(s) 361, 489
BslI CCNNNNNNNGG 2 cut(s) 55, 124
BsmAI GTCTC 1 cut(s) 112
BsnI GGCC 2 cut(s) 243, 548
Bsp1286I GDGCHC 2 cut(s) 361, 489
Bsp19I CCATGG 1 cut(s) 208
BspACI CCGC 5 cut(s) 56, 75, 78, 83, 222
BspANI GGCC 2 cut(s) 243, 548
BspCNI CTCAG 4 cut(s) 26, 116, 122, 403
BspLI GGNNCC 2 cut(s) 269, 432
BspT107I GGYRCC 1 cut(s) 430
BssECI CCNNGG 2 cut(s) 208, 315
BssT1I CCWWGG 2 cut(s) 208, 315
Bst2UI CCWGG 2 cut(s) 245, 272
Bst4CI ACNGT 3 cut(s) 34, 251, 622
Bst6I CTCTTC 1 cut(s) 202
BstC8I GCNNGC 3 cut(s) 135, 489, 520
BstDEI CTNAG 5 cut(s) 13, 103, 109, 218, 411
BstDSI CCRYGG 1 cut(s) 208
BstEII GGTNACC 1 cut(s) 58
BstF5I GGATG 2 cut(s) 325, 457
BstMAI GTCTC 1 cut(s) 112
BstMWI GCNNNNNNNGC 3 cut(s) 190, 231, 240
BstNI CCWGG 2 cut(s) 245, 272
BstPI GGTNACC 1 cut(s) 58
BstSCI CCNGG 2 cut(s) 243, 270
BstSLI GKGCMC 1 cut(s) 361
BstV1I GCAGC 4 cut(s) 67, 237, 296, 369
BsuRI GGCC 2 cut(s) 243, 548
BtgI CCRYGG 1 cut(s) 208
BtsCI GGATG 2 cut(s) 325, 457
BtsIMutI CAGTG 1 cut(s) 627
Cac8I GCNNGC 3 cut(s) 135, 489, 520
Cfr13I GGNCC 2 cut(s) 241, 546
CviAII CATG 1 cut(s) 209
DdeI CTNAG 5 cut(s) 13, 103, 109, 218, 411
Eam1104I CTCTTC 1 cut(s) 202
EarI CTCTTC 1 cut(s) 202
Eco130I CCWWGG 2 cut(s) 208, 315
Eco32I GATATC 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 214
Eco91I GGTNACC 1 cut(s) 58
EcoO65I GGTNACC 1 cut(s) 58
EcoRII CCWGG 2 cut(s) 243, 270
EcoRV GATATC 1 cut(s) 115
EcoT14I CCWWGG 2 cut(s) 208, 315
ErhI CCWWGG 2 cut(s) 208, 315
FaeI CATG 1 cut(s) 212
FatI CATG 1 cut(s) 208
Fnu4HI GCNGC 6 cut(s) 78, 81, 223, 226, 310, 383
FokI GGATG 2 cut(s) 332, 464
Fsp4HI GCNGC 6 cut(s) 78, 81, 223, 226, 310, 383
GluI GCNGC 6 cut(s) 78, 81, 223, 226, 310, 383
GsaI CCCAGC 1 cut(s) 127
HaeIII GGCC 2 cut(s) 243, 548
Hin1II CATG 1 cut(s) 212
HinfI GANTC 2 cut(s) 213, 236
HphI GGTGA 2 cut(s) 22, 52
Hpy166II GTNNAC 1 cut(s) 359
Hpy188I TCNGA 6 cut(s) 16, 112, 177, 294, 412, 427
Hpy188III TCNNGA 2 cut(s) 388, 506
Hpy8I GTNNAC 1 cut(s) 359
Hpy99I CGWCG 2 cut(s) 23, 38
HpyCH4III ACNGT 3 cut(s) 34, 251, 622
HpyCH4IV ACGT 1 cut(s) 278
HpyCH4V TGCA 3 cut(s) 42, 359, 445
HpyF10VI GCNNNNNNNGC 3 cut(s) 190, 231, 240
HpyF3I CTNAG 5 cut(s) 13, 103, 109, 218, 411
HpySE526I ACGT 1 cut(s) 278
Hsp92II CATG 1 cut(s) 212
LmnI GCTCC 1 cut(s) 471
Lsp1109I GCAGC 4 cut(s) 67, 237, 296, 369
LweI GCATC 2 cut(s) 369, 428
MaeII ACGT 1 cut(s) 278
MaeIII GTNAC 2 cut(s) 58, 322
MboII GAAGA 3 cut(s) 189, 494, 616
MfeI CAATTG 2 cut(s) 258, 446
MhlI GDGCHC 2 cut(s) 361, 489
MlyI GAGTC 1 cut(s) 207
MnlI CCTC 4 cut(s) 346, 354, 406, 421
MseI TTAA 2 cut(s) 165, 642
MslI CAYNNNNRTG 2 cut(s) 492, 554
MspA1I CMGCKG 1 cut(s) 80
MspR9I CCNGG 2 cut(s) 245, 272
MunI CAATTG 2 cut(s) 258, 446
MvaI CCWGG 2 cut(s) 245, 272
MwoI GCNNNNNNNGC 3 cut(s) 190, 231, 240
NcoI CCATGG 1 cut(s) 208
NlaIII CATG 1 cut(s) 212
NlaIV GGNNCC 2 cut(s) 269, 432
NmuCI GTSAC 1 cut(s) 58
OliI CACNNNNGTG 1 cut(s) 492
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 6 cut(s) 79, 82, 224, 227, 311, 384
PleI GAGTC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 207
Psp1406I AACGTT 1 cut(s) 278
Psp6I CCWGG 2 cut(s) 243, 270
PspEI GGTNACC 1 cut(s) 58
PspFI CCCAGC 1 cut(s) 123
PspGI CCWGG 2 cut(s) 243, 270
PspN4I GGNNCC 2 cut(s) 269, 432
PspPI GGNCC 2 cut(s) 241, 546
RseI CAYNNNNRTG 2 cut(s) 492, 554
SaqAI TTAA 2 cut(s) 165, 642
SatI GCNGC 6 cut(s) 78, 81, 223, 226, 310, 383
Sau96I GGNCC 2 cut(s) 241, 546
SchI GAGTC 1 cut(s) 207
ScrFI CCNGG 2 cut(s) 245, 272
SduI GDGCHC 2 cut(s) 361, 489
SfaNI GCATC 2 cut(s) 369, 428
SmiMI CAYNNNNRTG 2 cut(s) 492, 554
SsiI CCGC 5 cut(s) 56, 75, 78, 83, 222
StyD4I CCNGG 2 cut(s) 243, 270
StyI CCWWGG 2 cut(s) 208, 315
TaaI ACNGT 3 cut(s) 34, 251, 622
TaiI ACGT 1 cut(s) 281
TauI GCSGC 2 cut(s) 80, 225
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 2 cut(s) 165, 642
Tru9I TTAA 2 cut(s) 165, 642
TscAI CASTG 1 cut(s) 627
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 4 cut(s) 80, 225, 309, 382
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 16
TspRI CASTG 1 cut(s) 627
VneI GTGCAC 1 cut(s) 357
XapI RAATTY 2 cut(s) 535, 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.