Rroxscaffold_6G00408280

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0008774
Physical Location & Seq
Forward (+)
30745253 .. 30748833
3581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00408280.1

Sequence Viewer

Length: 699 bp
ATGTCATTAACTGATGTCGGCATAGCAAGTCTTCTTCTCAAATGTTGCAAGCTACATTCAGTTTTAGTTTGCGATACTTCTTTTGGGATAAATTCGGTACTAGCTCTTTGTTCTAGCCCTTCAGATTACGTTGCTGGCCAACATATAACAAATAAGCATTTGGATCCCCTGGCATTTAATCTTCAGGCACTTCATATGGGTGGCTGCAAGTGTGTTGAAGAAGAATCTCTTCTAAAGATTATGTTTCAAATGCAAAAGCTGAAGACTTTTTGCTTGCGCGATACCAACCTAGATGATGGTGCTCTATGTAGGTTTGGAGGTTCATCCTTGGAGATGCTTGACGTTTCTAATACTAAGGTTTCGCAAGCTGCTTTAGCTCATCTTGTTGGTAGAAATCCAGGTTTGAAGAGTTTGAAACTGAGAGGCTGTAGAAATTTGTCTCAACAAGAATGTGACGCTCAAAATGGAGAATTTTCTTCAGCCTATTCATGCAGAGAACTACATAATACAATTGGAAGAACTCTTATGTTGGAAGAAATAGCACTTGGATGGGGATTTTCTTATTTCTCTTTGGAAGCACTGAACCCTGCAATCTCATCACTGAGGAAAATAACAGTGGGCTTAGGTGGATCATTAGGTGAAGACTACCAAATATTTGTCCTATGCTTGAGTCTATTATTCTTTACTTTCAGGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BACK BTB

Protein Analysis

232

Amino Acids

25.35

Weight (kDa)

6.58

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 279
AclWI GGATC 3 cut(s) 158, 171, 637
AcoI YGGCCR 1 cut(s) 136
AcsI RAATTY 3 cut(s) 91, 433, 470
AcuI CTGAAG 4 cut(s) 105, 167, 281, 462
AfaI GTAC 1 cut(s) 99
AgsI TTSAA 4 cut(s) 218, 248, 406, 415
AjnI CCWGG 2 cut(s) 168, 397
AjuI GAANNNNNNNTTGG 2 cut(s) 528, 560
AluBI AGCT 5 cut(s) 52, 104, 259, 368, 377
AluI AGCT 5 cut(s) 52, 104, 259, 368, 377
Alw21I GWGCWC 1 cut(s) 304
Alw26I GTCTC 1 cut(s) 444
AlwI GGATC 3 cut(s) 158, 171, 637
AoxI GGCC 1 cut(s) 136
ApeKI GCWGC 2 cut(s) 204, 368
ApoI RAATTY 3 cut(s) 91, 433, 470
Asp700I GAANNNNTTC 1 cut(s) 228
AspLEI GCGC 1 cut(s) 279
AsuHPI GGTGA 1 cut(s) 650
BalI TGGCCA 1 cut(s) 138
BamHI GGATCC 1 cut(s) 163
BbsI GAAGAC 3 cut(s) 23, 269, 648
Bbv12I GWGCWC 1 cut(s) 304
BbvI GCAGC 2 cut(s) 191, 355
BccI CCATC 2 cut(s) 290, 543
BciT130I CCWGG 2 cut(s) 170, 399
BcoDI GTCTC 1 cut(s) 444
BfaI CTAG 3 cut(s) 101, 114, 290
BfmI CTRYAG 1 cut(s) 427
BisI GCNGC 2 cut(s) 205, 369
BlsI GCNGC 2 cut(s) 206, 370
Bme1390I CCNGG 2 cut(s) 170, 399
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 2 cut(s) 170, 399
BmsI GCATC 1 cut(s) 324
BpiI GAAGAC 3 cut(s) 23, 269, 648
Bpu10I CCTNAGC 1 cut(s) 622
BpuEI CTTGAG 1 cut(s) 688
BsaJI CCNNGG 2 cut(s) 168, 327
BseBI CCWGG 2 cut(s) 170, 399
BseDI CCNNGG 2 cut(s) 168, 327
BseGI GGATG 2 cut(s) 323, 554
BseMII CTCAG 2 cut(s) 410, 593
BseXI GCAGC 2 cut(s) 191, 355
Bsh1236I CGCG 1 cut(s) 279
BshFI GGCC 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 304
BsmAI GTCTC 1 cut(s) 444
BsnI GGCC 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 304
Bsp143I GATC 2 cut(s) 163, 629
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 2 cut(s) 411, 594
BspFNI CGCG 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 165
BspPI GGATC 3 cut(s) 158, 171, 637
BssECI CCNNGG 2 cut(s) 168, 327
BssMI GATC 2 cut(s) 163, 629
BssT1I CCWWGG 1 cut(s) 327
Bst2UI CCWGG 2 cut(s) 170, 399
Bst4CI ACNGT 1 cut(s) 616
Bst6I CTCTTC 2 cut(s) 234, 401
BstC8I GCNNGC 4 cut(s) 50, 136, 275, 366
BstDEI CTNAG 4 cut(s) 354, 419, 602, 622
BstF5I GGATG 2 cut(s) 323, 554
BstFNI CGCG 1 cut(s) 279
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 2 cut(s) 166, 632
BstMAI GTCTC 1 cut(s) 444
BstMBI GATC 2 cut(s) 163, 629
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstNI CCWGG 2 cut(s) 170, 399
BstSCI CCNGG 2 cut(s) 168, 397
BstSFI CTRYAG 1 cut(s) 427
BstUI CGCG 1 cut(s) 279
BstV1I GCAGC 2 cut(s) 191, 355
BstV2I GAAGAC 3 cut(s) 23, 269, 648
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BsuRI GGCC 1 cut(s) 138
BtsCI GGATG 2 cut(s) 323, 554
BtsIMutI CAGTG 3 cut(s) 578, 599, 621
Cac8I GCNNGC 4 cut(s) 50, 136, 275, 366
CfoI GCGC 1 cut(s) 279
CseI GACGC 1 cut(s) 464
Csp6I GTAC 1 cut(s) 98
CviAII CATG 1 cut(s) 489
CviQI GTAC 1 cut(s) 98
DdeI CTNAG 4 cut(s) 354, 419, 602, 622
DpnI GATC 2 cut(s) 165, 631
DpnII GATC 2 cut(s) 163, 629
EaeI YGGCCR 1 cut(s) 136
Eam1104I CTCTTC 2 cut(s) 234, 401
EarI CTCTTC 2 cut(s) 234, 401
Eco130I CCWWGG 1 cut(s) 327
Eco57I CTGAAG 4 cut(s) 105, 167, 281, 462
EcoRII CCWGG 2 cut(s) 168, 397
EcoT14I CCWWGG 1 cut(s) 327
ErhI CCWWGG 1 cut(s) 327
FaeI CATG 1 cut(s) 492
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FatI CATG 1 cut(s) 488
FauNDI CATATG 1 cut(s) 195
Fnu4HI GCNGC 2 cut(s) 205, 369
FokI GGATG 2 cut(s) 310, 561
Fsp4HI GCNGC 2 cut(s) 205, 369
FspBI CTAG 3 cut(s) 101, 114, 290
GlaI GCGC 1 cut(s) 278
GluI GCNGC 2 cut(s) 205, 369
HaeIII GGCC 1 cut(s) 138
HgaI GACGC 1 cut(s) 464
HhaI GCGC 1 cut(s) 279
Hin1II CATG 1 cut(s) 492
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HinfI GANTC 2 cut(s) 224, 670
HphI GGTGA 1 cut(s) 650
Hpy188I TCNGA 1 cut(s) 124
HpyAV CCTTC 1 cut(s) 129
HpyCH4III ACNGT 1 cut(s) 616
HpyCH4IV ACGT 2 cut(s) 129, 342
HpyCH4V TGCA 5 cut(s) 48, 207, 253, 492, 590
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpyF3I CTNAG 4 cut(s) 354, 419, 602, 622
HpySE526I ACGT 2 cut(s) 129, 342
Hsp92II CATG 1 cut(s) 492
HspAI GCGC 1 cut(s) 277
Kzo9I GATC 2 cut(s) 163, 629
LpnPI CCDG 8 cut(s) 120, 155, 170, 182, 384, 411, 600, 676
Lsp1109I GCAGC 2 cut(s) 191, 355
LweI GCATC 1 cut(s) 324
MaeI CTAG 3 cut(s) 101, 114, 290
MaeII ACGT 2 cut(s) 129, 342
MaeIII GTNAC 1 cut(s) 452
MalI GATC 2 cut(s) 165, 631
MboI GATC 2 cut(s) 163, 629
MfeI CAATTG 1 cut(s) 510
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 304
MlsI TGGCCA 1 cut(s) 138
MluCI AATT 4 cut(s) 91, 433, 470, 510
MluNI TGGCCA 1 cut(s) 138
MlyI GAGTC 1 cut(s) 679
MmeI TCCRAC 1 cut(s) 510
MnlI CCTC 3 cut(s) 311, 416, 597
Mox20I TGGCCA 1 cut(s) 138
MroXI GAANNNNTTC 1 cut(s) 228
MscI TGGCCA 1 cut(s) 138
MseI TTAA 3 cut(s) 8, 177, 697
MslI CAYNNNNRTG 2 cut(s) 198, 547
Msp20I TGGCCA 1 cut(s) 138
MspR9I CCNGG 2 cut(s) 170, 399
MunI CAATTG 1 cut(s) 510
MvaI CCWGG 2 cut(s) 170, 399
MvnI CGCG 1 cut(s) 279
MwoI GCNNNNNNNGC 1 cut(s) 374
NdeI CATATG 1 cut(s) 195
NdeII GATC 2 cut(s) 163, 629
NlaIII CATG 1 cut(s) 492
NlaIV GGNNCC 1 cut(s) 165
NmuCI GTSAC 1 cut(s) 452
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 2 cut(s) 206, 370
PleI GAGTC 1 cut(s) 678
PpsI GAGTC 1 cut(s) 678
Psp6I CCWGG 2 cut(s) 168, 397
PspGI CCWGG 2 cut(s) 168, 397
PspN4I GGNNCC 1 cut(s) 165
PsuI RGATCY 1 cut(s) 163
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
RseI CAYNNNNRTG 2 cut(s) 198, 547
SaqAI TTAA 3 cut(s) 8, 177, 697
SatI GCNGC 2 cut(s) 205, 369
Sau3AI GATC 2 cut(s) 163, 629
SchI GAGTC 1 cut(s) 679
ScrFI CCNGG 2 cut(s) 170, 399
SduI GDGCHC 1 cut(s) 304
SfaNI GCATC 1 cut(s) 324
SfcI CTRYAG 1 cut(s) 427
SmiMI CAYNNNNRTG 2 cut(s) 198, 547
SmlI CTYRAG 1 cut(s) 667
SmoI CTYRAG 1 cut(s) 667
Sse9I AATT 4 cut(s) 91, 433, 470, 510
SspI AATATT 1 cut(s) 654
SspMI CTAG 3 cut(s) 101, 114, 290
StyD4I CCNGG 2 cut(s) 168, 397
StyI CCWWGG 1 cut(s) 327
TaaI ACNGT 1 cut(s) 616
TaiI ACGT 2 cut(s) 132, 345
TasI AATT 4 cut(s) 91, 433, 470, 510
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 3 cut(s) 8, 177, 697
Tru9I TTAA 3 cut(s) 8, 177, 697
TscAI CASTG 3 cut(s) 585, 606, 621
TseFI GTSAC 1 cut(s) 452
TseI GCWGC 2 cut(s) 204, 368
Tsp45I GTSAC 1 cut(s) 452
TspDTI ATGAA 3 cut(s) 182, 312, 477
TspRI CASTG 3 cut(s) 585, 606, 621
XapI RAATTY 3 cut(s) 91, 433, 470
XmnI GAANNNNTTC 1 cut(s) 228
XspI CTAG 3 cut(s) 101, 114, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.