Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011581.1

Orthogroup ID

OG0008774

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2149

Gene Structure 2149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011581.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1024 bp

atggcttcaagctcagacgacgacttcataaccgtcgtatgcacaaaccccaaagcggtcaccaccaccaccgccgctgcggagagagaagttcttatctcagtcacagatatccaaagctgggattcgccggcaattctctgttgccaaacactcaaagttaaagctcatcggaacaggcttatccagcactcttcttatttccatggactcctaaccggcagcttcagcgaatcgggcctggactgtatagcaattgagtggaacctggaaacgtttgtagatgttctgaattgtatatacggctgcccgttggatgttacatttgataattttctccctcttattgagggtgcactttactttggagtggagatgctgctcacgaaatgtaaaacttggttttctgaggtggcatcatcggaggtgccaccacaaatgcaattggatgatttgatttatatttggagctttggtttagagcacgaagttgctgaaaatttacctgccaaagctgtttcgaagacaacattaaaggcagagctggggaagaaagagaaacataaatctacaaaggaaaataattcagtatctgctcgaaatagtcctaccaaaaccaagttagcaaataaggtctcagcagcaaaaccggggcgaaaagtcaaggtgcatggagtgccttcttcatctagcttcgtcagtggaaatgtggcaagcaagttttccagaaacaccctccgcagtgtcaaacaatccagcaggaataaaagtattctaaataagaagcaaaaacaagattcaatgtctcttgcctgcaaatctagtaagaataatgaagctgatgctgatattgatgcatgtacaagtcagctggtctgtgaaagatgccatattgccctcaaaggtgccggaaaacaatccaatcaagctttggcaacccccagtcttgctgctgatataagctcaagcaatgtacggtccagtccaagtaaaccaggcttcaccgtagacagctgtaagaccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

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Protein Analysis

341

Amino Acids

36.96

Weight (kDa)

8.73

Isoelectric Point (pI)

50.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36370
fragaria_vesca	FvH4_6g18170 FvH4_6g18170 FvH4_6g18170
malus_domestica	MD12G1021400.v1.1
prunus_persica	Prupe.7G115000_v2.0.a1
pyrus_communis	pycom12g02010
rosa_chinensis	RchiOBHm_Chr3g0472491 RchiOBHm_Chr3g0472501
rosa_laevigata	RLG00000024075
rosa_multiflora	Rmu_sc0002145.1_g000001 Rmu_sc0011581.1_g000001
rosa_roxburghii	Rroxscaffold_6G00408280 Rroxscaffold_6G00408880
rosa_rugosa	Rorug03G0126000
rosa_samantha	Rh3AG177900 Rh3AG183400 Rh3BG203800 Rh3CG194200 Rh3CG201300 Rh3DG171100 Rh3DG171300
rosa_wichuraiana	Rw3G016370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	514
AccB1I	GGYRCC	2 cut(s)	427, 905
AccI	GTMKAC	1 cut(s)	1008
AciI	CCGC	5 cut(s)	56, 72, 75, 80, 739
AclI	AACGTT	1 cut(s)	275
AcsI	RAATTY	1 cut(s)	499
AcuI	CTGAAG	1 cut(s)	211
AfaI	GTAC	2 cut(s)	862, 975
AfiI	CCNNNNNNNGG	2 cut(s)	55, 121
AgsI	TTSAA	2 cut(s)	9, 801
AjnI	CCWGG	3 cut(s)	240, 267, 994
Alw21I	GWGCWC	2 cut(s)	358, 486
Alw26I	GTCTC	2 cut(s)	640, 810
Alw44I	GTGCAC	1 cut(s)	354
AlwNI	CAGNNNCTG	1 cut(s)	593
AoxI	GGCC	1 cut(s)	238
ApaLI	GTGCAC	1 cut(s)	354
ApeKI	GCWGC	6 cut(s)	77, 222, 306, 379, 641, 950
ApoI	RAATTY	1 cut(s)	499
AspS9I	GGNCC	2 cut(s)	238, 978
AsuC2I	CCSGG	1 cut(s)	651
AsuHPI	GGTGA	2 cut(s)	52, 994
AsuII	TTCGAA	1 cut(s)	521
AvaII	GGWCC	1 cut(s)	978
BaeGI	GKGCMC	1 cut(s)	358
BanI	GGYRCC	2 cut(s)	427, 905
BbsI	GAAGAC	1 cut(s)	530
Bbv12I	GWGCWC	2 cut(s)	358, 486
BbvI	GCAGC	6 cut(s)	64, 234, 293, 366, 653, 937
BceAI	ACGGC	1 cut(s)	319
BciT130I	CCWGG	3 cut(s)	242, 269, 996
BcnI	CCSGG	1 cut(s)	651
BcoDI	GTCTC	2 cut(s)	640, 810
BfaI	CTAG	2 cut(s)	690, 822
BfuAI	ACCTGC	1 cut(s)	514
BisI	GCNGC	7 cut(s)	75, 78, 223, 307, 380, 642, 951
BlsI	GCNGC	7 cut(s)	76, 79, 224, 308, 381, 643, 952
Bme1390I	CCNGG	4 cut(s)	242, 269, 651, 996
Bme18I	GGWCC	1 cut(s)	978
BmgT120I	GGNCC	2 cut(s)	238, 978
BmiI	GGNNCC	3 cut(s)	266, 429, 907
BmrFI	CCNGG	4 cut(s)	242, 269, 651, 996
BmrI	ACTGGG	1 cut(s)	936
BmsI	GCATC	5 cut(s)	366, 425, 832, 844, 875
BmuI	ACTGGG	1 cut(s)	936
BpiI	GAAGAC	1 cut(s)	530
Bpu14I	TTCGAA	1 cut(s)	521
BpuEI	CTTGAG	1 cut(s)	949
BpuMI	CCSGG	1 cut(s)	651
BsaI	GGTCTC	1 cut(s)	640
BsaJI	CCNNGG	2 cut(s)	205, 650
BsaXI	ACNNNNNCTCC	2 cut(s)	460, 490
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 121
Bse118I	RCCGGY	2 cut(s)	130, 218
Bse1I	ACTGG	2 cut(s)	942, 981
Bse3DI	GCAATG	1 cut(s)	976
BseBI	CCWGG	3 cut(s)	242, 269, 996
BseDI	CCNNGG	2 cut(s)	205, 650
BseGI	GGATG	2 cut(s)	322, 454
BseLI	CCNNNNNNNGG	2 cut(s)	55, 121
BseMI	GCAATG	1 cut(s)	976
BseMII	CTCAG	4 cut(s)	27, 114, 399, 651
BseNI	ACTGG	2 cut(s)	942, 981
BseSI	GKGCMC	1 cut(s)	358
BseXI	GCAGC	6 cut(s)	64, 234, 293, 366, 653, 937
BseYI	CCCAGC	2 cut(s)	120, 544
BshFI	GGCC	1 cut(s)	240
BshNI	GGYRCC	2 cut(s)	427, 905
BsiHKAI	GWGCWC	2 cut(s)	358, 486
BsiSI	CCGG	4 cut(s)	131, 219, 650, 909
BslI	CCNNNNNNNGG	2 cut(s)	55, 121
BsmAI	GTCTC	2 cut(s)	640, 810
BsnI	GGCC	1 cut(s)	240
Bso31I	GGTCTC	1 cut(s)	640
Bsp119I	TTCGAA	1 cut(s)	521
Bsp1286I	GDGCHC	2 cut(s)	358, 486
Bsp1407I	TGTACA	1 cut(s)	860
Bsp19I	CCATGG	1 cut(s)	205
BspACI	CCGC	5 cut(s)	56, 72, 75, 80, 739
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	4 cut(s)	26, 113, 400, 650
BspLI	GGNNCC	3 cut(s)	266, 429, 907
BspMI	ACCTGC	1 cut(s)	514
BspT104I	TTCGAA	1 cut(s)	521
BspT107I	GGYRCC	2 cut(s)	427, 905
BspTNI	GGTCTC	1 cut(s)	640
BsrDI	GCAATG	1 cut(s)	976
BsrFI	RCCGGY	2 cut(s)	130, 218
BsrGI	TGTACA	1 cut(s)	860
BsrI	ACTGG	2 cut(s)	942, 981
BssAI	RCCGGY	2 cut(s)	130, 218
BssECI	CCNNGG	2 cut(s)	205, 650
BssT1I	CCWWGG	1 cut(s)	205
Bst2UI	CCWGG	3 cut(s)	242, 269, 996
Bst4CI	ACNGT	4 cut(s)	34, 248, 978, 1006
Bst6I	CTCTTC	1 cut(s)	199
BstAPI	GCANNNNNTGC	1 cut(s)	676
BstAUI	TGTACA	1 cut(s)	860
BstBI	TTCGAA	1 cut(s)	521
BstC8I	GCNNGC	3 cut(s)	132, 715, 814
BstDEI	CTNAG	4 cut(s)	13, 100, 408, 637
BstDSI	CCRYGG	1 cut(s)	205
BstEII	GGTNACC	1 cut(s)	58
BstF5I	GGATG	2 cut(s)	322, 454
BstMAI	GTCTC	2 cut(s)	640, 810
BstMWI	GCNNNNNNNGC	4 cut(s)	187, 228, 237, 676
BstNI	CCWGG	3 cut(s)	242, 269, 996
BstNSI	RCATGY	1 cut(s)	861
BstPI	GGTNACC	1 cut(s)	58
BstSCI	CCNGG	4 cut(s)	240, 267, 649, 994
BstSLI	GKGCMC	1 cut(s)	358
BstV1I	GCAGC	6 cut(s)	64, 234, 293, 366, 653, 937
BstV2I	GAAGAC	1 cut(s)	530
BsuRI	GGCC	1 cut(s)	240
BtgI	CCRYGG	1 cut(s)	205
BtsCI	GGATG	2 cut(s)	322, 454
BtsI	GCAGTG	1 cut(s)	748
BtsIMutI	CAGTG	2 cut(s)	706, 748
BveI	ACCTGC	1 cut(s)	514
Cac8I	GCNNGC	3 cut(s)	132, 715, 814
CaiI	CAGNNNCTG	1 cut(s)	593
Cfr10I	RCCGGY	2 cut(s)	130, 218
Cfr13I	GGNCC	2 cut(s)	238, 978
Csp6I	GTAC	2 cut(s)	861, 974
CviAII	CATG	3 cut(s)	206, 671, 858
CviQI	GTAC	2 cut(s)	861, 974
DdeI	CTNAG	4 cut(s)	13, 100, 408, 637
Eam1104I	CTCTTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	205
Eco31I	GGTCTC	1 cut(s)	640
Eco32I	GATATC	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	978
Eco57I	CTGAAG	1 cut(s)	211
Eco91I	GGTNACC	1 cut(s)	58
EcoO65I	GGTNACC	1 cut(s)	58
EcoRII	CCWGG	3 cut(s)	240, 267, 994
EcoRV	GATATC	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	205
EcoT22I	ATGCAT	1 cut(s)	859
ErhI	CCWWGG	1 cut(s)	205
FaeI	CATG	3 cut(s)	209, 674, 861
FatI	CATG	3 cut(s)	205, 670, 857
FblI	GTMKAC	1 cut(s)	1008
Fnu4HI	GCNGC	7 cut(s)	75, 78, 223, 307, 380, 642, 951
FokI	GGATG	2 cut(s)	329, 461
Fsp4HI	GCNGC	7 cut(s)	75, 78, 223, 307, 380, 642, 951
FspBI	CTAG	2 cut(s)	690, 822
GluI	GCNGC	7 cut(s)	75, 78, 223, 307, 380, 642, 951
GsaI	CCCAGC	2 cut(s)	124, 548
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	4 cut(s)	131, 219, 650, 909
Hin1II	CATG	3 cut(s)	209, 674, 861
HindIII	AAGCTT	1 cut(s)	927
HinfI	GANTC	4 cut(s)	125, 210, 233, 797
HpaII	CCGG	4 cut(s)	131, 219, 650, 909
HphI	GGTGA	2 cut(s)	52, 994
Hpy166II	GTNNAC	3 cut(s)	356, 992, 1009
Hpy188I	TCNGA	5 cut(s)	16, 174, 291, 409, 424
Hpy188III	TCNNGA	2 cut(s)	385, 726
Hpy8I	GTNNAC	3 cut(s)	356, 992, 1009
Hpy99I	CGWCG	2 cut(s)	23, 38
HpyAV	CCTTC	1 cut(s)	690
HpyCH4III	ACNGT	4 cut(s)	34, 248, 978, 1006
HpyCH4IV	ACGT	1 cut(s)	275
HpyCH4V	TGCA	6 cut(s)	42, 356, 442, 670, 816, 857
HpyF10VI	GCNNNNNNNGC	4 cut(s)	187, 228, 237, 676
HpyF3I	CTNAG	4 cut(s)	13, 100, 408, 637
HpySE526I	ACGT	1 cut(s)	275
Hsp92II	CATG	3 cut(s)	209, 674, 861
KroI	GCCGGC	1 cut(s)	130
KroNI	GCCGGC	1 cut(s)	132
LmnI	GCTCC	1 cut(s)	468
Lsp1109I	GCAGC	6 cut(s)	64, 234, 293, 366, 653, 937
LweI	GCATC	5 cut(s)	366, 425, 832, 844, 875
MaeI	CTAG	2 cut(s)	690, 822
MaeII	ACGT	1 cut(s)	275
MaeIII	GTNAC	3 cut(s)	58, 103, 319
MboII	GAAGA	4 cut(s)	186, 535, 562, 675
MfeI	CAATTG	2 cut(s)	255, 443
MhlI	GDGCHC	2 cut(s)	358, 486
MluCI	AATT	7 cut(s)	135, 255, 292, 331, 443, 499, 583
MlyI	GAGTC	1 cut(s)	204
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	6 cut(s)	343, 351, 403, 418, 746, 908
Mph1103I	ATGCAT	1 cut(s)	859
MroNI	GCCGGC	1 cut(s)	130
MseI	TTAA	2 cut(s)	162, 533
MspA1I	CMGCKG	3 cut(s)	77, 871, 1014
MspI	CCGG	4 cut(s)	131, 219, 650, 909
MspR9I	CCNGG	4 cut(s)	242, 269, 651, 996
MunI	CAATTG	2 cut(s)	255, 443
MvaI	CCWGG	3 cut(s)	242, 269, 996
MwoI	GCNNNNNNNGC	4 cut(s)	187, 228, 237, 676
NaeI	GCCGGC	1 cut(s)	132
NciI	CCSGG	1 cut(s)	651
NcoI	CCATGG	1 cut(s)	205
NgoMIV	GCCGGC	1 cut(s)	130
NlaIII	CATG	3 cut(s)	209, 674, 861
NlaIV	GGNNCC	3 cut(s)	266, 429, 907
NmuCI	GTSAC	2 cut(s)	58, 103
NsiI	ATGCAT	1 cut(s)	859
NspI	RCATGY	1 cut(s)	861
NspV	TTCGAA	1 cut(s)	521
PdiI	GCCGGC	1 cut(s)	132
PfeI	GAWTC	3 cut(s)	125, 233, 797
PkrI	GCNGC	7 cut(s)	76, 79, 224, 308, 381, 643, 952
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
Psp1406I	AACGTT	1 cut(s)	275
Psp6I	CCWGG	3 cut(s)	240, 267, 994
PspEI	GGTNACC	1 cut(s)	58
PspFI	CCCAGC	2 cut(s)	120, 544
PspGI	CCWGG	3 cut(s)	240, 267, 994
PspN4I	GGNNCC	3 cut(s)	266, 429, 907
PspPI	GGNCC	2 cut(s)	238, 978
PstNI	CAGNNNCTG	1 cut(s)	593
PvuII	CAGCTG	2 cut(s)	871, 1014
RsaI	GTAC	2 cut(s)	862, 975
RsaNI	GTAC	2 cut(s)	861, 974
SaqAI	TTAA	2 cut(s)	162, 533
SatI	GCNGC	7 cut(s)	75, 78, 223, 307, 380, 642, 951
Sau96I	GGNCC	2 cut(s)	238, 978
SchI	GAGTC	1 cut(s)	204
ScrFI	CCNGG	4 cut(s)	242, 269, 651, 996
SduI	GDGCHC	2 cut(s)	358, 486
SfaNI	GCATC	5 cut(s)	366, 425, 832, 844, 875
SfuI	TTCGAA	1 cut(s)	521
SinI	GGWCC	1 cut(s)	978
SmlI	CTYRAG	1 cut(s)	964
SmoI	CTYRAG	1 cut(s)	964
Sse9I	AATT	7 cut(s)	135, 255, 292, 331, 443, 499, 583
SsiI	CCGC	5 cut(s)	56, 72, 75, 80, 739
SspMI	CTAG	2 cut(s)	690, 822
StyD4I	CCNGG	4 cut(s)	240, 267, 649, 994
StyI	CCWWGG	1 cut(s)	205
TaaI	ACNGT	4 cut(s)	34, 248, 978, 1006
TaiI	ACGT	1 cut(s)	278
TaqI	TCGA	2 cut(s)	521, 598
TasI	AATT	7 cut(s)	135, 255, 292, 331, 443, 499, 583
TatI	WGTACW	1 cut(s)	860
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	3 cut(s)	125, 233, 797
Tru1I	TTAA	2 cut(s)	162, 533
Tru9I	TTAA	2 cut(s)	162, 533
TscAI	CASTG	2 cut(s)	706, 748
TseFI	GTSAC	2 cut(s)	58, 103
TseI	GCWGC	6 cut(s)	77, 222, 306, 379, 641, 950
Tsp45I	GTSAC	2 cut(s)	58, 103
TspDTI	ATGAA	3 cut(s)	16, 675, 849
TspRI	CASTG	2 cut(s)	706, 748
VneI	GTGCAC	1 cut(s)	354
VpaK11BI	GGWCC	1 cut(s)	978
XapI	RAATTY	1 cut(s)	499
XceI	RCATGY	1 cut(s)	861
XcmI	CCANNNNNNNNNTGG	1 cut(s)	928
XmiI	GTMKAC	1 cut(s)	1008
XspI	CTAG	2 cut(s)	690, 822
Zsp2I	ATGCAT	1 cut(s)	859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.