Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0008774

Physical Location & Seq

Genomic Coordinates Forward (+)

15039646 .. 15042897

Gene Structure 3252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG171100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGTTGTTCTCCTGCTTGGCTGCTTTGTATTTTCTAGTGTTATACTGTTGTGCCTCAGATATCGGAAAACTGAGCATGGCTTCAAGCTCAGACGACGACTTCATCACCGTCGTATGCACAAACCCCAAAGCGGTCACCACCATCACTGCCGCCGCGGCGGAGAGAGAAGTTCTTATCTCAGTCACAGATATCCAAAGCTGGGGTTTGCCGGCAATTCTGTGTTGCCAAACACTCAAAGTTAAAGCTCATCGGAACAGGCTTATCCAGCACTCTTCTTATTTCCATGGACTCCTAAGCGGCAGCTTCAGCGAATCGGGCCTGGACTGTATAGCAATTGAGTGGAACCTGGAAACGTTTGTAGATGTTCTGAATTGTATATACGGCTGCCCCTTGGATGTTACATTTGATAATTTTCTCCCTCTTATTGAGGGTGCACTTTACTTTGGAGTGGAGATGCTGCTCACGAAATGTAAAACTTGGTTTTCTGAGGTGGCATCATCGGAGGTGCCACCACAAATGCAATTGGATGATTTGATTTATATTTGGAGCTTTGGTTTAGAGCACGCCTGTGATTTTCTTCCAGAATTGTGTGCGAGCTATCTTGCGAGAAATTTTATGTGGGCCATATCTGTGAATTGTTTTGTAGATATTCCATACGAATTATTATTATCTTGTGTGAAGAACATAAATTTGACAGTGGATAGTGAAATGCATCTTGCTGATGCACTTTTAATTTGGCTTGATGCTAACACAGCGAGGATGGAAGGTTTGAATGTAAATGGAGGTGACTGCACCGGCATTTTGAAACAGGTCCGTACAACTCTTTTGCCGTTGTGGTTTGCTGCAGAGAAAAGAAGTTCTTGTCATTTTTCTAAGTTTGCTGATGAGAGCATTAATTCAATTTTTAGACTACTGAAAATTCCATCCTCTGGCTCAATACATGCCTTAGGAGATGGTCACTTGCATGATTTAAGGATTCGGCTGACAAAGTTTTCTAAGATTTCTGGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BACK BTB

Protein Analysis

337

Amino Acids

37.41

Weight (kDa)

5.15

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	72 - 159	2e-10	BTB/POZ domain
BACK	PF07707	179 - 280	1.5e-08	BTB And C-terminal Kelch

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36370
fragaria_vesca	FvH4_6g18170 FvH4_6g18170 FvH4_6g18170
malus_domestica	MD12G1021400.v1.1
prunus_persica	Prupe.7G115000_v2.0.a1
pyrus_communis	pycom12g02010
rosa_chinensis	RchiOBHm_Chr3g0472491 RchiOBHm_Chr3g0472501
rosa_laevigata	RLG00000024075
rosa_multiflora	Rmu_sc0002145.1_g000001 Rmu_sc0011581.1_g000001
rosa_roxburghii	Rroxscaffold_6G00408280 Rroxscaffold_6G00408880
rosa_rugosa	Rorug03G0126000
rosa_samantha	Rh3AG177900 Rh3AG183400 Rh3BG203800 Rh3CG194200 Rh3CG201300 Rh3DG171100 Rh3DG171300
rosa_wichuraiana	Rw3G016370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	505
AccB7I	CCANNNNNTGG	1 cut(s)	929
AccII	CGCG	1 cut(s)	155
AciI	CCGC	6 cut(s)	131, 150, 153, 155, 158, 297
AclI	AACGTT	1 cut(s)	353
AcsI	RAATTY	3 cut(s)	610, 688, 918
AcuI	CTGAAG	1 cut(s)	289
AfaI	GTAC	1 cut(s)	817
AfiI	CCNNNNNNNGG	3 cut(s)	130, 199, 929
AgsI	TTSAA	4 cut(s)	84, 772, 805, 900
AjnI	CCWGG	2 cut(s)	318, 345
AleI	CACNNNNGTG	1 cut(s)	567
AluBI	AGCT	6 cut(s)	87, 198, 245, 303, 549, 597
AluI	AGCT	6 cut(s)	87, 198, 245, 303, 549, 597
Alw21I	GWGCWC	2 cut(s)	436, 564
Alw44I	GTGCAC	1 cut(s)	432
AoxI	GGCC	2 cut(s)	316, 621
ApaLI	GTGCAC	1 cut(s)	432
ApeKI	GCWGC	5 cut(s)	20, 300, 384, 457, 842
ApoI	RAATTY	3 cut(s)	610, 688, 918
AseI	ATTAAT	1 cut(s)	894
AspS9I	GGNCC	3 cut(s)	316, 621, 811
AsuHPI	GGTGA	3 cut(s)	97, 127, 797
AvaII	GGWCC	1 cut(s)	811
AxyI	CCTNAGG	1 cut(s)	946
BaeGI	GKGCMC	1 cut(s)	436
BanI	GGYRCC	1 cut(s)	505
Bbv12I	GWGCWC	2 cut(s)	436, 564
BbvI	GCAGC	5 cut(s)	7, 312, 371, 444, 829
BccI	CCATC	4 cut(s)	149, 754, 931, 947
BceAI	ACGGC	2 cut(s)	397, 814
BciT130I	CCWGG	2 cut(s)	320, 347
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	843
BglI	GCCNNNNNGGC	1 cut(s)	155
BisI	GCNGC	9 cut(s)	21, 150, 153, 156, 298, 301, 385, 458, 843
BlsI	GCNGC	9 cut(s)	22, 151, 154, 157, 299, 302, 386, 459, 844
Bme1390I	CCNGG	2 cut(s)	320, 347
Bme18I	GGWCC	1 cut(s)	811
BmgT120I	GGNCC	3 cut(s)	316, 621, 811
BmiI	GGNNCC	2 cut(s)	344, 507
BmrFI	CCNGG	2 cut(s)	320, 347
BmsI	GCATC	5 cut(s)	444, 503, 712, 721, 733
Bpu10I	CCTNAGC	1 cut(s)	293
BsaJI	CCNNGG	3 cut(s)	153, 283, 390
BsaXI	ACNNNNNCTCC	2 cut(s)	538, 568
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 199, 929
Bse118I	RCCGGY	2 cut(s)	208, 794
Bse21I	CCTNAGG	1 cut(s)	946
BseBI	CCWGG	2 cut(s)	320, 347
BseDI	CCNNGG	3 cut(s)	153, 283, 390
BseGI	GGATG	4 cut(s)	400, 532, 765, 923
BseLI	CCNNNNNNNGG	3 cut(s)	130, 199, 929
BseMII	CTCAG	5 cut(s)	62, 69, 102, 192, 477
BseSI	GKGCMC	1 cut(s)	436
BseXI	GCAGC	5 cut(s)	7, 312, 371, 444, 829
BseYI	CCCAGC	1 cut(s)	198
BsgI	GTGCAG	1 cut(s)	775
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	2 cut(s)	318, 623
BshNI	GGYRCC	1 cut(s)	505
BsiHKAI	GWGCWC	2 cut(s)	436, 564
BsiSI	CCGG	2 cut(s)	209, 795
BslI	CCNNNNNNNGG	3 cut(s)	130, 199, 929
BsnI	GGCC	2 cut(s)	318, 623
Bsp1286I	GDGCHC	2 cut(s)	436, 564
Bsp19I	CCATGG	1 cut(s)	283
BspACI	CCGC	6 cut(s)	131, 150, 153, 155, 158, 297
BspANI	GGCC	2 cut(s)	318, 623
BspCNI	CTCAG	5 cut(s)	63, 68, 101, 191, 478
BspFNI	CGCG	1 cut(s)	155
BspLI	GGNNCC	2 cut(s)	344, 507
BspMAI	CTGCAG	1 cut(s)	847
BspT107I	GGYRCC	1 cut(s)	505
BsrFI	RCCGGY	2 cut(s)	208, 794
BssAI	RCCGGY	2 cut(s)	208, 794
BssECI	CCNNGG	3 cut(s)	153, 283, 390
BssT1I	CCWWGG	2 cut(s)	283, 390
Bst2UI	CCWGG	2 cut(s)	320, 347
Bst4CI	ACNGT	4 cut(s)	47, 109, 326, 697
Bst6I	CTCTTC	1 cut(s)	277
BstC8I	GCNNGC	3 cut(s)	210, 564, 595
BstDEI	CTNAG	9 cut(s)	55, 71, 88, 178, 293, 486, 873, 946, 996
BstDSI	CCRYGG	2 cut(s)	153, 283
BstEII	GGTNACC	1 cut(s)	133
BstF5I	GGATG	4 cut(s)	400, 532, 765, 923
BstFNI	CGCG	1 cut(s)	155
BstMWI	GCNNNNNNNGC	5 cut(s)	155, 265, 306, 315, 752
BstNI	CCWGG	2 cut(s)	320, 347
BstNSI	RCATGY	1 cut(s)	944
BstPI	GGTNACC	1 cut(s)	133
BstSCI	CCNGG	2 cut(s)	318, 345
BstSFI	CTRYAG	1 cut(s)	843
BstSLI	GKGCMC	1 cut(s)	436
BstUI	CGCG	1 cut(s)	155
BstV1I	GCAGC	5 cut(s)	7, 312, 371, 444, 829
Bsu36I	CCTNAGG	1 cut(s)	946
BsuRI	GGCC	2 cut(s)	318, 623
BtgI	CCRYGG	2 cut(s)	153, 283
BtsCI	GGATG	4 cut(s)	400, 532, 765, 923
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	2 cut(s)	144, 702
Cac8I	GCNNGC	3 cut(s)	210, 564, 595
Cfr10I	RCCGGY	2 cut(s)	208, 794
Cfr13I	GGNCC	3 cut(s)	316, 621, 811
Cfr42I	CCGCGG	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	816
CviAII	CATG	4 cut(s)	76, 284, 941, 965
CviQI	GTAC	1 cut(s)	816
DdeI	CTNAG	9 cut(s)	55, 71, 88, 178, 293, 486, 873, 946, 996
Eam1104I	CTCTTC	1 cut(s)	277
EarI	CTCTTC	1 cut(s)	277
EciI	GGCGGA	1 cut(s)	173
Eco130I	CCWWGG	2 cut(s)	283, 390
Eco32I	GATATC	2 cut(s)	61, 190
Eco47I	GGWCC	1 cut(s)	811
Eco57I	CTGAAG	1 cut(s)	289
Eco81I	CCTNAGG	1 cut(s)	946
Eco91I	GGTNACC	1 cut(s)	133
EcoO65I	GGTNACC	1 cut(s)	133
EcoRII	CCWGG	2 cut(s)	318, 345
EcoRV	GATATC	2 cut(s)	61, 190
EcoT14I	CCWWGG	2 cut(s)	283, 390
EcoT22I	ATGCAT	1 cut(s)	714
ErhI	CCWWGG	2 cut(s)	283, 390
FaeI	CATG	4 cut(s)	79, 287, 944, 968
FalI	AAGNNNNNCTT	2 cut(s)	844, 876
FatI	CATG	4 cut(s)	75, 283, 940, 964
Fnu4HI	GCNGC	9 cut(s)	21, 150, 153, 156, 298, 301, 385, 458, 843
FokI	GGATG	4 cut(s)	407, 539, 772, 910
Fsp4HI	GCNGC	9 cut(s)	21, 150, 153, 156, 298, 301, 385, 458, 843
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	9 cut(s)	21, 150, 153, 156, 298, 301, 385, 458, 843
GsaI	CCCAGC	1 cut(s)	202
HaeIII	GGCC	2 cut(s)	318, 623
HapII	CCGG	2 cut(s)	209, 795
Hin1II	CATG	4 cut(s)	79, 287, 944, 968
HinfI	GANTC	3 cut(s)	288, 311, 976
HpaII	CCGG	2 cut(s)	209, 795
HphI	GGTGA	3 cut(s)	97, 127, 797
Hpy166II	GTNNAC	1 cut(s)	434
Hpy188I	TCNGA	7 cut(s)	58, 65, 91, 252, 369, 487, 502
Hpy188III	TCNNGA	3 cut(s)	463, 581, 1005
Hpy8I	GTNNAC	1 cut(s)	434
Hpy99I	CGWCG	2 cut(s)	98, 113
HpyAV	CCTTC	1 cut(s)	758
HpyCH4III	ACNGT	4 cut(s)	47, 109, 326, 697
HpyCH4IV	ACGT	1 cut(s)	353
HpyCH4V	TGCA	8 cut(s)	117, 434, 520, 712, 725, 792, 845, 964
HpyF10VI	GCNNNNNNNGC	5 cut(s)	155, 265, 306, 315, 752
HpyF3I	CTNAG	9 cut(s)	55, 71, 88, 178, 293, 486, 873, 946, 996
HpySE526I	ACGT	1 cut(s)	353
Hsp92II	CATG	4 cut(s)	79, 287, 944, 968
KroI	GCCGGC	1 cut(s)	208
KroNI	GCCGGC	1 cut(s)	210
KspI	CCGCGG	1 cut(s)	156
LmnI	GCTCC	1 cut(s)	546
Lsp1109I	GCAGC	5 cut(s)	7, 312, 371, 444, 829
LweI	GCATC	5 cut(s)	444, 503, 712, 721, 733
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	1 cut(s)	353
MaeIII	GTNAC	5 cut(s)	133, 181, 397, 785, 956
MboII	GAAGA	3 cut(s)	264, 569, 691
MfeI	CAATTG	2 cut(s)	333, 521
MhlI	GDGCHC	2 cut(s)	436, 564
MlyI	GAGTC	1 cut(s)	282
MnlI	CCTC	8 cut(s)	64, 421, 429, 481, 496, 750, 776, 937
Mph1103I	ATGCAT	1 cut(s)	714
MroNI	GCCGGC	1 cut(s)	208
MseI	TTAA	4 cut(s)	240, 731, 894, 971
MslI	CAYNNNNRTG	3 cut(s)	567, 629, 963
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	2 cut(s)	209, 795
MspR9I	CCNGG	2 cut(s)	320, 347
MunI	CAATTG	2 cut(s)	333, 521
MvaI	CCWGG	2 cut(s)	320, 347
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	5 cut(s)	155, 265, 306, 315, 752
NaeI	GCCGGC	1 cut(s)	210
NcoI	CCATGG	1 cut(s)	283
NgoMIV	GCCGGC	1 cut(s)	208
NlaIII	CATG	4 cut(s)	79, 287, 944, 968
NlaIV	GGNNCC	2 cut(s)	344, 507
NmuCI	GTSAC	4 cut(s)	133, 181, 785, 956
NsiI	ATGCAT	1 cut(s)	714
NspI	RCATGY	1 cut(s)	944
OliI	CACNNNNGTG	1 cut(s)	567
PdiI	GCCGGC	1 cut(s)	210
PfeI	GAWTC	2 cut(s)	311, 976
PflMI	CCANNNNNTGG	1 cut(s)	929
PkrI	GCNGC	9 cut(s)	22, 151, 154, 157, 299, 302, 386, 459, 844
PleI	GAGTC	1 cut(s)	282
PpsI	GAGTC	1 cut(s)	282
PshBI	ATTAAT	1 cut(s)	894
Psp1406I	AACGTT	1 cut(s)	353
Psp6I	CCWGG	2 cut(s)	318, 345
PspEI	GGTNACC	1 cut(s)	133
PspFI	CCCAGC	1 cut(s)	198
PspGI	CCWGG	2 cut(s)	318, 345
PspN4I	GGNNCC	2 cut(s)	344, 507
PspPI	GGNCC	3 cut(s)	316, 621, 811
PstI	CTGCAG	1 cut(s)	847
RsaI	GTAC	1 cut(s)	817
RsaNI	GTAC	1 cut(s)	816
RseI	CAYNNNNRTG	3 cut(s)	567, 629, 963
SacII	CCGCGG	1 cut(s)	156
SaqAI	TTAA	4 cut(s)	240, 731, 894, 971
SatI	GCNGC	9 cut(s)	21, 150, 153, 156, 298, 301, 385, 458, 843
Sau96I	GGNCC	3 cut(s)	316, 621, 811
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	2 cut(s)	320, 347
SduI	GDGCHC	2 cut(s)	436, 564
SfaNI	GCATC	5 cut(s)	444, 503, 712, 721, 733
SfcI	CTRYAG	1 cut(s)	843
Sfr303I	CCGCGG	1 cut(s)	156
SgrBI	CCGCGG	1 cut(s)	156
SinI	GGWCC	1 cut(s)	811
SmiMI	CAYNNNNRTG	3 cut(s)	567, 629, 963
SsiI	CCGC	6 cut(s)	131, 150, 153, 155, 158, 297
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	2 cut(s)	318, 345
StyI	CCWWGG	2 cut(s)	283, 390
TaaI	ACNGT	4 cut(s)	47, 109, 326, 697
TaiI	ACGT	1 cut(s)	356
TauI	GCSGC	4 cut(s)	152, 155, 158, 300
TfiI	GAWTC	2 cut(s)	311, 976
Tru1I	TTAA	4 cut(s)	240, 731, 894, 971
Tru9I	TTAA	4 cut(s)	240, 731, 894, 971
TscAI	CASTG	2 cut(s)	151, 702
TseFI	GTSAC	4 cut(s)	133, 181, 785, 956
TseI	GCWGC	5 cut(s)	20, 300, 384, 457, 842
Tsp45I	GTSAC	4 cut(s)	133, 181, 785, 956
TspDTI	ATGAA	1 cut(s)	91
TspGWI	ACGGA	1 cut(s)	803
TspRI	CASTG	2 cut(s)	151, 702
Van91I	CCANNNNNTGG	1 cut(s)	929
VneI	GTGCAC	1 cut(s)	432
VpaK11BI	GGWCC	1 cut(s)	811
VspI	ATTAAT	1 cut(s)	894
XapI	RAATTY	3 cut(s)	610, 688, 918
XceI	RCATGY	1 cut(s)	944
XspI	CTAG	1 cut(s)	35
Zsp2I	ATGCAT	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.