RchiOBHm_Chr3g0474811

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016146
Physical Location & Seq
Reverse (-)
20577079 .. 20580541
3463 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 495 bp
ATGTGGGCGAGTGCAGAAGGAGGAGCACCGGAGGTGACCCTAGAGACCTCCATGGGGGCTTTCACGGTTGAGCTTTACTACAAGCACGCACCCAGGACTTGCAGGAACTTCATCGAGCTCTCTCGCAGAGGCTACTACAACAATGTCAAGTTCCACAGAATCATCAAGGATTTCATAGTGCAAGGTGGTGATCCTACTGGGACTGGAAGGGGTGGAGAATCCATTTATGGTTCAAAATTTGAAGATGAGATAAGACCAGAGTTGAAGCATACTGGAGCTGGAATCTTGTCCATGGCAAATGCTGGTCCAGATTCAAATGGAAGCCAGTTCTTTATCACGCTCGCACCGTGTGCTCCGCTGGATGGAAAACACACAATATTTGGAAGAGTGTGCAGTGGAATGGAAATCATCAAAAGACTGGGTAGTGTCCAAACTGATAATAGTGATAGGCCCGTCCATGATGTGAAGATACTGCGGACATCTGTCAAGGATTAG

Protein Analysis

164

Amino Acids

17.98

Weight (kDa)

7.75

Isoelectric Point (pI)

28.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 12 - 162 2.6e-54 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016146)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36130
fragaria_vesca FvH4_6g19480
malus_domestica MD12G1030900.v1.1 MD14G1031400.v1.1
prunus_persica Prupe.7G101500_v2.0.a1
pyrus_communis pycom12g02890 pycom14g02830
rosa_chinensis RchiOBHm_Chr3g0474811
rosa_laevigata RLG00000023893
rosa_multiflora Rmu_sc0004848.1_g000010
rosa_roxburghii Rroxscaffold_6G00406830
rosa_rugosa Rorug03G0144100
rosa_samantha Rh3BG223700 Rh3CG218600
rosa_wichuraiana Rw3G017650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 356, 475
AclWI GGATC 1 cut(s) 185
AcsI RAATTY 1 cut(s) 236
AdeI CACNNNGTG 1 cut(s) 350
AfiI CCNNNNNNNGG 2 cut(s) 54, 362
AgsI TTSAA 4 cut(s) 234, 242, 265, 315
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 3 cut(s) 73, 118, 278
AluI AGCT 3 cut(s) 73, 118, 278
Alw21I GWGCWC 3 cut(s) 28, 120, 355
Alw26I GTCTC 1 cut(s) 38
AlwI GGATC 1 cut(s) 185
AoxI GGCC 1 cut(s) 449
ApoI RAATTY 1 cut(s) 236
AspS9I GGNCC 2 cut(s) 305, 450
AsuHPI GGTGA 2 cut(s) 46, 200
AvaII GGWCC 1 cut(s) 305
BanII GRGCYC 1 cut(s) 120
Bbv12I GWGCWC 3 cut(s) 28, 120, 355
BccI CCATC 1 cut(s) 356
BciT130I CCWGG 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 1 cut(s) 41
Bme1390I CCNGG 1 cut(s) 94
Bme18I GGWCC 1 cut(s) 305
BmgT120I GGNCC 2 cut(s) 305, 450
BmrFI CCNGG 1 cut(s) 94
BmrI ACTGGG 2 cut(s) 207, 428
BmuI ACTGGG 2 cut(s) 207, 428
BoxI GACNNNNGTC 1 cut(s) 482
BpmI CTGGAG 1 cut(s) 294
BsaI GGTCTC 1 cut(s) 38
BsaJI CCNNGG 3 cut(s) 51, 92, 291
BsaWI WCCGGW 1 cut(s) 28
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 362
Bse1I ACTGG 5 cut(s) 202, 208, 277, 325, 423
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 3 cut(s) 51, 92, 291
BseGI GGATG 1 cut(s) 367
BseLI CCNNNNNNNGG 2 cut(s) 54, 362
BseNI ACTGG 5 cut(s) 202, 208, 277, 325, 423
BseRI GAGGAG 1 cut(s) 36
BsgI GTGCAG 2 cut(s) 33, 412
BshFI GGCC 1 cut(s) 451
BsiHKAI GWGCWC 3 cut(s) 28, 120, 355
BsiSI CCGG 1 cut(s) 29
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 2 cut(s) 54, 362
BsmAI GTCTC 1 cut(s) 38
BsmFI GGGAC 1 cut(s) 214
BsnI GGCC 1 cut(s) 451
Bso31I GGTCTC 1 cut(s) 38
Bsp1286I GDGCHC 3 cut(s) 28, 120, 355
Bsp143I GATC 1 cut(s) 190
Bsp19I CCATGG 2 cut(s) 51, 291
BspACI CCGC 2 cut(s) 356, 475
BspANI GGCC 1 cut(s) 451
BspPI GGATC 1 cut(s) 185
BspTNI GGTCTC 1 cut(s) 38
BsrI ACTGG 5 cut(s) 202, 208, 277, 325, 423
BssECI CCNNGG 3 cut(s) 51, 92, 291
BssMI GATC 1 cut(s) 190
BssT1I CCWWGG 2 cut(s) 51, 291
Bst2UI CCWGG 1 cut(s) 94
Bst4CI ACNGT 2 cut(s) 67, 348
Bst6I CTCTTC 1 cut(s) 379
BstAPI GCANNNNNTGC 1 cut(s) 350
BstC8I GCNNGC 2 cut(s) 87, 342
BstDSI CCRYGG 2 cut(s) 51, 291
BstEII GGTNACC 1 cut(s) 34
BstF5I GGATG 1 cut(s) 367
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 1 cut(s) 350
BstNI CCWGG 1 cut(s) 94
BstPAI GACNNNNGTC 1 cut(s) 482
BstPI GGTNACC 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 92
BsuRI GGCC 1 cut(s) 451
BtgI CCRYGG 2 cut(s) 51, 291
BtsCI GGATG 1 cut(s) 367
BtsI GCAGTG 1 cut(s) 400
BtsIMutI CAGTG 1 cut(s) 400
Cac8I GCNNGC 2 cut(s) 87, 342
Cfr13I GGNCC 2 cut(s) 305, 450
CviAII CATG 3 cut(s) 52, 292, 458
CviJI RGCY 7 cut(s) 59, 73, 118, 132, 278, 324, 451
CviKI_1 RGCY 7 cut(s) 59, 73, 118, 132, 278, 324, 451
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
DraIII CACNNNGTG 1 cut(s) 350
Eam1104I CTCTTC 1 cut(s) 379
EarI CTCTTC 1 cut(s) 379
Ecl136II GAGCTC 1 cut(s) 118
Eco130I CCWWGG 2 cut(s) 51, 291
Eco24I GRGCYC 1 cut(s) 120
Eco31I GGTCTC 1 cut(s) 38
Eco47I GGWCC 1 cut(s) 305
Eco53kI GAGCTC 1 cut(s) 118
Eco91I GGTNACC 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 118
EcoO65I GGTNACC 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 92
EcoT14I CCWWGG 2 cut(s) 51, 291
EcoT38I GRGCYC 1 cut(s) 120
ErhI CCWWGG 2 cut(s) 51, 291
FaeI CATG 3 cut(s) 55, 295, 461
FaiI YATR 6 cut(s) 53, 176, 228, 270, 293, 459
FaqI GGGAC 1 cut(s) 214
FatI CATG 3 cut(s) 51, 291, 457
FokI GGATG 1 cut(s) 374
FriOI GRGCYC 1 cut(s) 120
FspBI CTAG 1 cut(s) 41
GsuI CTGGAG 1 cut(s) 294
HaeIII GGCC 1 cut(s) 451
HapII CCGG 1 cut(s) 29
Hin1II CATG 3 cut(s) 55, 295, 461
HinfI GANTC 4 cut(s) 159, 218, 282, 311
HpaII CCGG 1 cut(s) 29
HphI GGTGA 2 cut(s) 46, 200
Hpy188III TCNNGA 1 cut(s) 308
HpyAV CCTTC 2 cut(s) 11, 201
HpyCH4III ACNGT 2 cut(s) 67, 348
HpyCH4V TGCA 4 cut(s) 14, 102, 181, 393
HpyF10VI GCNNNNNNNGC 1 cut(s) 350
Hsp92II CATG 3 cut(s) 55, 295, 461
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 3 cut(s) 23, 275, 358
MaeI CTAG 1 cut(s) 41
MaeIII GTNAC 1 cut(s) 34
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 3 cut(s) 254, 396, 478
MhlI GDGCHC 3 cut(s) 28, 120, 355
MluCI AATT 1 cut(s) 236
MnlI CCTC 4 cut(s) 14, 25, 58, 122
MspA1I CMGCKG 1 cut(s) 358
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 94
MvaI CCWGG 1 cut(s) 94
MwoI GCNNNNNNNGC 1 cut(s) 350
NcoI CCATGG 2 cut(s) 51, 291
NdeII GATC 1 cut(s) 190
NlaIII CATG 3 cut(s) 55, 295, 461
NmuCI GTSAC 1 cut(s) 34
PcsI WCGNNNNNNNCGW 1 cut(s) 344
PfeI GAWTC 4 cut(s) 159, 218, 282, 311
PshAI GACNNNNGTC 1 cut(s) 482
Psp124BI GAGCTC 1 cut(s) 120
Psp6I CCWGG 1 cut(s) 92
PspEI GGTNACC 1 cut(s) 34
PspGI CCWGG 1 cut(s) 92
PspPI GGNCC 2 cut(s) 305, 450
SacI GAGCTC 1 cut(s) 120
Sau3AI GATC 1 cut(s) 190
Sau96I GGNCC 2 cut(s) 305, 450
ScrFI CCNGG 1 cut(s) 94
SduI GDGCHC 3 cut(s) 28, 120, 355
SetI ASST 6 cut(s) 36, 50, 75, 120, 187, 280
SinI GGWCC 1 cut(s) 305
Sse9I AATT 1 cut(s) 236
SsiI CCGC 2 cut(s) 356, 475
SspI AATATT 1 cut(s) 378
SspMI CTAG 1 cut(s) 41
SstI GAGCTC 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 92
StyI CCWWGG 2 cut(s) 51, 291
TaaI ACNGT 2 cut(s) 67, 348
TaqI TCGA 1 cut(s) 114
TasI AATT 1 cut(s) 236
TfiI GAWTC 4 cut(s) 159, 218, 282, 311
TscAI CASTG 1 cut(s) 400
TseFI GTSAC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 2 cut(s) 100, 163
TspRI CASTG 1 cut(s) 400
VpaK11BI GGWCC 1 cut(s) 305
XapI RAATTY 1 cut(s) 236
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.