RchiOBHm_Chr3g0475721

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0018055
Physical Location & Seq
Reverse (-)
21555961 .. 21557057
1097 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 879 bp
ATGGCTTCTGGACCCCAAAATAATCAGCCCAGAAACCAAGAACAACATTCCGGTCAACACTCCCAAAGCGAACTACCTTCTGCCGTATCCAACTACCCCCCATCAGGGGGTAACAACTACCCTCCATCCGCAATGAACTACCCTCAGCAACCCTACCCGGGGGTCCCACCGCAGGGCTACCCGGGCTACGGCTATAACCCTTACCCCCCCGCAGCATACGCCCAAGACCCAGCCGCCGCCTATTACGCCACGCAGACATATTCACCGGCAGAGGAAGGAGCCAACCACTGCTTCCGCTGCATCTGCGTAATCATGCTGGTATCACTCATGTTTACCCTTATTGCAAGCATCATCCTCCTCTTCGTCGCCAAACCCGAGCATGCCTCCTTCAAGGTAGATTCCCTCAGCGTCTCCAACTTCAACACAAACCCGGCAAACAAAGTCCTCACGGGAAAATGGGAGGCCAAAGTGAATGTGGAAAACGGTAGGACGAGACTCAATATCGAGAACGTGGAGCCCAGTCTGTACCAAAAGGACACCTGGTTGGCGCGCGGGTCGTCCGTGGGCATATCATCCTCCGGGTATTGGGACGAGTACAATTGGGGGAGTTCTCCTAGCACGATGGAGTTCAAATTCGAGGCCAACAATGTCTCGGCGCCGGCGGCGGATATTGAAAAGGAGATCAAAGAAACGGGAGGCGTGACGTTCAATTTGAGCATAGATATGAAATATGTGTCGAGGTCTTCTGGGTTTTGGTGGCATGTGAAGAGTGGGAGCATGAAAGTTACGTGCAAAGATTTAAAGATTGGTTTATCGGTCGGTGCTAATAGTGGATCGCTTACTGGTGAAAAAAAAAATTGTGAAGTTTCCGGTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

292

Amino Acids

31.72

Weight (kDa)

6.22

Isoelectric Point (pI)

40.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018055)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g20200
malus_domestica MD14G1037700.v1.1
prunus_persica Prupe.7G096900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0475721
rosa_laevigata RLG00000023821
rosa_multiflora Rmu_sc0000539.1_g000071
rosa_roxburghii Rroxscaffold_6G00405910
rosa_samantha Rh3BG231200 Rh3CG225800 Rh3DG226300
rosa_wichuraiana Rw3G018260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 655
AccII CGCG 2 cut(s) 550, 552
AciI CCGC 9 cut(s) 129, 170, 210, 234, 237, 295, 552, 662, 665
AclWI GGATC 1 cut(s) 841
AcsI RAATTY 1 cut(s) 632
AcyI GRCGYC 1 cut(s) 656
AfaI GTAC 2 cut(s) 527, 596
AgsI TTSAA 5 cut(s) 391, 421, 631, 674, 709
AjnI CCWGG 1 cut(s) 539
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
Alw26I GTCTC 3 cut(s) 415, 487, 655
AlwI GGATC 1 cut(s) 841
Ama87I CYCGRG 3 cut(s) 157, 181, 374
AoxI GGCC 2 cut(s) 462, 639
ApeKI GCWGC 2 cut(s) 212, 297
ApoI RAATTY 1 cut(s) 632
ArsI GACNNNNNNTTYG 2 cut(s) 694, 726
AspLEI GCGC 3 cut(s) 550, 552, 658
AspS9I GGNCC 2 cut(s) 11, 163
AsuC2I CCSGG 6 cut(s) 158, 159, 182, 183, 431, 580
AsuHPI GGTGA 2 cut(s) 255, 857
AvaI CYCGRG 3 cut(s) 157, 181, 374
AvaII GGWCC 2 cut(s) 11, 163
BanI GGYRCC 1 cut(s) 655
BanII GRGCYC 1 cut(s) 519
BbsI GAAGAC 1 cut(s) 735
BbvCI CCTCAGC 2 cut(s) 144, 404
BbvI GCAGC 2 cut(s) 224, 284
BccI CCATC 3 cut(s) 109, 133, 616
BceAI ACGGC 2 cut(s) 68, 205
BciT130I CCWGG 1 cut(s) 541
BciVI GTATCC 1 cut(s) 97
BcnI CCSGG 6 cut(s) 158, 159, 182, 183, 431, 580
BcoDI GTCTC 3 cut(s) 415, 487, 655
BfaI CTAG 1 cut(s) 615
BfoI RGCGCY 1 cut(s) 659
BfuI GTATCC 1 cut(s) 97
BisI GCNGC 5 cut(s) 213, 234, 237, 298, 663
BlsI GCNGC 5 cut(s) 214, 235, 238, 299, 664
Bme1390I CCNGG 7 cut(s) 158, 159, 182, 183, 431, 541, 580
Bme18I GGWCC 2 cut(s) 11, 163
BmeT110I CYCGRG 3 cut(s) 157, 181, 374
BmgT120I GGNCC 2 cut(s) 11, 163
BmiI GGNNCC 6 cut(s) 13, 164, 165, 280, 516, 657
BmrFI CCNGG 7 cut(s) 158, 159, 182, 183, 431, 541, 580
BmrI ACTGGG 1 cut(s) 513
BmsI GCATC 2 cut(s) 309, 357
BmuI ACTGGG 1 cut(s) 513
BpiI GAAGAC 1 cut(s) 735
BplI GAGNNNNNCTC 2 cut(s) 368, 400
Bpu10I CCTNAGC 2 cut(s) 144, 404
BpuMI CCSGG 6 cut(s) 158, 159, 182, 183, 431, 580
BsaAI YACGTR 1 cut(s) 789
BsaHI GRCGYC 1 cut(s) 656
BsaJI CCNNGG 4 cut(s) 157, 158, 181, 561
BsaWI WCCGGW 2 cut(s) 50, 869
Bse118I RCCGGY 2 cut(s) 265, 658
Bse1I ACTGG 2 cut(s) 519, 847
Bse3DI GCAATG 1 cut(s) 138
BseBI CCWGG 1 cut(s) 541
BseDI CCNNGG 4 cut(s) 157, 158, 181, 561
BseGI GGATG 3 cut(s) 125, 351, 572
BseMI GCAATG 1 cut(s) 138
BseMII CTCAG 2 cut(s) 158, 418
BseNI ACTGG 2 cut(s) 519, 847
BsePI GCGCGC 1 cut(s) 548
BseRI GAGGAG 1 cut(s) 347
BseXI GCAGC 2 cut(s) 224, 284
BseYI CCCAGC 1 cut(s) 229
Bsh1236I CGCG 2 cut(s) 550, 552
Bsh1285I CGRYCG 1 cut(s) 819
BshFI GGCC 2 cut(s) 464, 641
BshNI GGYRCC 1 cut(s) 655
BsiEI CGRYCG 1 cut(s) 819
BsiHKCI CYCGRG 3 cut(s) 157, 181, 374
BsiSI CCGG 8 cut(s) 51, 158, 182, 266, 431, 579, 659, 870
BslFI GGGAC 2 cut(s) 149, 602
BsmAI GTCTC 3 cut(s) 415, 487, 655
BsmBI CGTCTC 1 cut(s) 415
BsmFI GGGAC 2 cut(s) 149, 602
BsnI GGCC 2 cut(s) 464, 641
BsoBI CYCGRG 3 cut(s) 157, 181, 374
Bsp1286I GDGCHC 1 cut(s) 519
Bsp143I GATC 2 cut(s) 681, 833
BspACI CCGC 9 cut(s) 129, 170, 210, 234, 237, 295, 552, 662, 665
BspANI GGCC 2 cut(s) 464, 641
BspCNI CTCAG 2 cut(s) 157, 417
BspFNI CGCG 2 cut(s) 550, 552
BspLI GGNNCC 6 cut(s) 13, 164, 165, 280, 516, 657
BspPI GGATC 1 cut(s) 841
BspT107I GGYRCC 1 cut(s) 655
BsrDI GCAATG 1 cut(s) 138
BsrFI RCCGGY 2 cut(s) 265, 658
BsrI ACTGG 2 cut(s) 519, 847
BssAI RCCGGY 2 cut(s) 265, 658
BssECI CCNNGG 4 cut(s) 157, 158, 181, 561
BssHII GCGCGC 1 cut(s) 548
BssMI GATC 2 cut(s) 681, 833
BssNI GRCGYC 1 cut(s) 656
Bst2UI CCWGG 1 cut(s) 541
Bst4CI ACNGT 1 cut(s) 485
Bst6I CTCTTC 2 cut(s) 365, 761
BstACI GRCGYC 1 cut(s) 656
BstBAI YACGTR 1 cut(s) 789
BstC8I GCNNGC 4 cut(s) 346, 381, 550, 660
BstDEI CTNAG 2 cut(s) 144, 404
BstDSI CCRYGG 1 cut(s) 561
BstF5I GGATG 3 cut(s) 125, 351, 572
BstFNI CGCG 2 cut(s) 550, 552
BstH2I RGCGCY 1 cut(s) 659
BstHHI GCGC 3 cut(s) 550, 552, 658
BstKTI GATC 2 cut(s) 684, 836
BstMAI GTCTC 3 cut(s) 415, 487, 655
BstMBI GATC 2 cut(s) 681, 833
BstMCI CGRYCG 1 cut(s) 819
BstMWI GCNNNNNNNGC 6 cut(s) 183, 218, 245, 297, 303, 662
BstNI CCWGG 1 cut(s) 541
BstNSI RCATGY 2 cut(s) 383, 764
BstSCI CCNGG 7 cut(s) 156, 157, 180, 181, 429, 539, 578
BstUI CGCG 2 cut(s) 550, 552
BstV1I GCAGC 2 cut(s) 224, 284
BstV2I GAAGAC 1 cut(s) 735
BsuI GTATCC 1 cut(s) 97
BsuRI GGCC 2 cut(s) 464, 641
BtgI CCRYGG 1 cut(s) 561
BtsCI GGATG 3 cut(s) 125, 351, 572
BtsI GCAGTG 1 cut(s) 286
BtsIMutI CAGTG 1 cut(s) 286
Cac8I GCNNGC 4 cut(s) 346, 381, 550, 660
CfoI GCGC 3 cut(s) 550, 552, 658
Cfr10I RCCGGY 2 cut(s) 265, 658
Cfr13I GGNCC 2 cut(s) 11, 163
Cfr9I CCCGGG 2 cut(s) 157, 181
CseI GACGC 1 cut(s) 397
CsiI ACCWGGT 1 cut(s) 539
Csp6I GTAC 2 cut(s) 526, 595
CviAII CATG 5 cut(s) 313, 328, 380, 761, 778
CviQI GTAC 2 cut(s) 526, 595
DdeI CTNAG 2 cut(s) 144, 404
DinI GGCGCC 1 cut(s) 657
DpnI GATC 2 cut(s) 683, 835
DpnII GATC 2 cut(s) 681, 833
DraI TTTAAA 1 cut(s) 801
Eam1104I CTCTTC 2 cut(s) 365, 761
EarI CTCTTC 2 cut(s) 365, 761
EciI GGCGGA 1 cut(s) 680
Eco24I GRGCYC 1 cut(s) 519
Eco47I GGWCC 2 cut(s) 11, 163
Eco88I CYCGRG 3 cut(s) 157, 181, 374
EcoO109I RGGNCCY 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 539
EcoT38I GRGCYC 1 cut(s) 519
EgeI GGCGCC 1 cut(s) 657
EheI GGCGCC 1 cut(s) 657
Esp3I CGTCTC 1 cut(s) 415
FaeI CATG 5 cut(s) 316, 331, 383, 764, 781
FaqI GGGAC 2 cut(s) 149, 602
FatI CATG 5 cut(s) 312, 327, 379, 760, 777
FauI CCCGC 2 cut(s) 217, 545
Fnu4HI GCNGC 5 cut(s) 213, 234, 237, 298, 663
FokI GGATG 3 cut(s) 112, 338, 559
FriOI GRGCYC 1 cut(s) 519
Fsp4HI GCNGC 5 cut(s) 213, 234, 237, 298, 663
FspBI CTAG 1 cut(s) 615
GlaI GCGC 3 cut(s) 549, 551, 657
GluI GCNGC 5 cut(s) 213, 234, 237, 298, 663
GsaI CCCAGC 1 cut(s) 233
HaeII RGCGCY 1 cut(s) 659
HaeIII GGCC 2 cut(s) 464, 641
HapII CCGG 8 cut(s) 51, 158, 182, 266, 431, 579, 659, 870
HgaI GACGC 1 cut(s) 397
HhaI GCGC 3 cut(s) 550, 552, 658
Hin1I GRCGYC 1 cut(s) 656
Hin1II CATG 5 cut(s) 316, 331, 383, 764, 781
Hin6I GCGC 3 cut(s) 548, 550, 656
HinP1I GCGC 3 cut(s) 548, 550, 656
HincII GTYRAC 1 cut(s) 56
HindII GTYRAC 1 cut(s) 56
HinfI GANTC 2 cut(s) 398, 495
HpaII CCGG 8 cut(s) 51, 158, 182, 266, 431, 579, 659, 870
HphI GGTGA 2 cut(s) 255, 857
Hpy166II GTNNAC 2 cut(s) 56, 333
Hpy188III TCNNGA 2 cut(s) 9, 505
Hpy8I GTNNAC 2 cut(s) 56, 333
Hpy99I CGWCG 1 cut(s) 368
HpyAV CCTTC 3 cut(s) 87, 269, 397
HpyCH4III ACNGT 1 cut(s) 485
HpyCH4IV ACGT 3 cut(s) 510, 704, 788
HpyCH4V TGCA 3 cut(s) 300, 344, 792
HpyF10VI GCNNNNNNNGC 6 cut(s) 183, 218, 245, 297, 303, 662
HpyF3I CTNAG 2 cut(s) 144, 404
HpySE526I ACGT 3 cut(s) 510, 704, 788
Hsp92I GRCGYC 1 cut(s) 656
Hsp92II CATG 5 cut(s) 316, 331, 383, 764, 781
HspAI GCGC 3 cut(s) 548, 550, 656
KasI GGCGCC 1 cut(s) 655
KflI GGGWCCC 1 cut(s) 163
KroI GCCGGC 1 cut(s) 658
KroNI GCCGGC 1 cut(s) 660
Kzo9I GATC 2 cut(s) 681, 833
LmnI GCTCC 3 cut(s) 278, 514, 774
Lsp1109I GCAGC 2 cut(s) 224, 284
LweI GCATC 2 cut(s) 309, 357
MabI ACCWGGT 1 cut(s) 539
MaeI CTAG 1 cut(s) 615
MaeII ACGT 3 cut(s) 510, 704, 788
MaeIII GTNAC 3 cut(s) 110, 700, 784
MalI GATC 2 cut(s) 683, 835
MboI GATC 2 cut(s) 681, 833
MboII GAAGA 3 cut(s) 352, 735, 778
MfeI CAATTG 1 cut(s) 598
MhlI GDGCHC 1 cut(s) 519
MluCI AATT 4 cut(s) 598, 632, 709, 856
Mly113I GGCGCC 1 cut(s) 656
MlyI GAGTC 1 cut(s) 489
MmeI TCCRAC 2 cut(s) 114, 438
MreI CGCCGGCG 1 cut(s) 658
MroNI GCCGGC 1 cut(s) 658
MseI TTAA 1 cut(s) 800
MslI CAYNNNNRTG 1 cut(s) 722
MspA1I CMGCKG 1 cut(s) 297
MspI CCGG 8 cut(s) 51, 158, 182, 266, 431, 579, 659, 870
MspR9I CCNGG 7 cut(s) 158, 159, 182, 183, 431, 541, 580
MunI CAATTG 1 cut(s) 598
MvaI CCWGG 1 cut(s) 541
MvnI CGCG 2 cut(s) 550, 552
MwoI GCNNNNNNNGC 6 cut(s) 183, 218, 245, 297, 303, 662
NaeI GCCGGC 1 cut(s) 660
NarI GGCGCC 1 cut(s) 656
NciI CCSGG 6 cut(s) 158, 159, 182, 183, 431, 580
NdeII GATC 2 cut(s) 681, 833
NgoMIV GCCGGC 1 cut(s) 658
NlaIII CATG 5 cut(s) 316, 331, 383, 764, 781
NlaIV GGNNCC 6 cut(s) 13, 164, 165, 280, 516, 657
NmeAIII GCCGAG 1 cut(s) 632
NmuCI GTSAC 1 cut(s) 700
NspI RCATGY 2 cut(s) 383, 764
PaeI GCATGC 1 cut(s) 383
PauI GCGCGC 1 cut(s) 548
PcsI WCGNNNNNNNCGW 1 cut(s) 372
PdiI GCCGGC 1 cut(s) 660
PfeI GAWTC 1 cut(s) 398
PkrI GCNGC 5 cut(s) 214, 235, 238, 299, 664
PleI GAGTC 1 cut(s) 489
PluTI GGCGCC 1 cut(s) 659
PpsI GAGTC 1 cut(s) 489
Ppu21I YACGTR 1 cut(s) 789
PpuMI RGGWCCY 1 cut(s) 163
Psp5II RGGWCCY 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 539
PspFI CCCAGC 1 cut(s) 229
PspGI CCWGG 1 cut(s) 539
PspN4I GGNNCC 6 cut(s) 13, 164, 165, 280, 516, 657
PspPI GGNCC 2 cut(s) 11, 163
PspPPI RGGWCCY 1 cut(s) 163
PteI GCGCGC 1 cut(s) 548
RsaI GTAC 2 cut(s) 527, 596
RsaNI GTAC 2 cut(s) 526, 595
RseI CAYNNNNRTG 1 cut(s) 722
SaqAI TTAA 1 cut(s) 800
SatI GCNGC 5 cut(s) 213, 234, 237, 298, 663
Sau3AI GATC 2 cut(s) 681, 833
Sau96I GGNCC 2 cut(s) 11, 163
SchI GAGTC 1 cut(s) 489
ScrFI CCNGG 7 cut(s) 158, 159, 182, 183, 431, 541, 580
SduI GDGCHC 1 cut(s) 519
SetI ASST 7 cut(s) 79, 396, 513, 542, 707, 743, 791
SexAI ACCWGGT 1 cut(s) 539
SfaNI GCATC 2 cut(s) 309, 357
SfoI GGCGCC 1 cut(s) 657
SgrAI CRCCGGYG 1 cut(s) 658
SinI GGWCC 2 cut(s) 11, 163
SmaI CCCGGG 2 cut(s) 159, 183
SmiMI CAYNNNNRTG 1 cut(s) 722
SphI GCATGC 1 cut(s) 383
Sse9I AATT 4 cut(s) 598, 632, 709, 856
SsiI CCGC 9 cut(s) 129, 170, 210, 234, 237, 295, 552, 662, 665
SspDI GGCGCC 1 cut(s) 655
SspMI CTAG 1 cut(s) 615
StyD4I CCNGG 7 cut(s) 156, 157, 180, 181, 429, 539, 578
TaaI ACNGT 1 cut(s) 485
TaiI ACGT 3 cut(s) 513, 707, 791
TaqI TCGA 3 cut(s) 504, 636, 737
TaqII GACCGA 1 cut(s) 805
TasI AATT 4 cut(s) 598, 632, 709, 856
TatI WGTACW 1 cut(s) 594
TauI GCSGC 3 cut(s) 236, 239, 665
TfiI GAWTC 1 cut(s) 398
Tru1I TTAA 1 cut(s) 800
Tru9I TTAA 1 cut(s) 800
TscAI CASTG 1 cut(s) 293
TseFI GTSAC 1 cut(s) 700
TseI GCWGC 2 cut(s) 212, 297
Tsp45I GTSAC 1 cut(s) 700
TspDTI ATGAA 3 cut(s) 149, 740, 794
TspGWI ACGGA 1 cut(s) 550
TspMI CCCGGG 2 cut(s) 157, 181
TspRI CASTG 1 cut(s) 293
VpaK11BI GGWCC 2 cut(s) 11, 163
XapI RAATTY 1 cut(s) 632
XceI RCATGY 2 cut(s) 383, 764
XcmI CCANNNNNNNNNTGG 1 cut(s) 472
XmaI CCCGGG 2 cut(s) 157, 181
XspI CTAG 1 cut(s) 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.