Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019578

Physical Location & Seq

Genomic Coordinates Forward (+)

22853383 .. 22853634

Gene Structure 252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGTATTTTTTTTTCCCGTATTTCAAATACTTCTTACAGTACCAAATAAGTTATTGGGTTTTCTTTTGATGGTTTCAGTACCTGCAGGATTATTAACAGTACCTTTTTTGGAGAATGTTAATAAATTCCAAAATTCATTTCGTCATCCCGTAGCGACAACCGTTTTTTTTATTAGTACTGCAGTAGCTCTTTGGTTGGGTATTGGAGCAACACTACCTATTGATAAGTCCCTAACTTTAGGTCATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

Cytochrom_B_C

Protein Analysis

83

Amino Acids

9.16

Weight (kDa)

9.7

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cytochrom_B_C	PF00032	3 - 78	7e-09	Cytochrome b(C-terminal)/b6/petD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00730
malus_domestica	MD16G1017300.v1.1
pyrus_communis	pycom12397g00180
rosa_chinensis	RchiOBHm_Chr3g0476911 RchiOBHm_CPg0501911 RchiOBHm_CPg0501931
rosa_wichuraiana	Rw7G013570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	91
AcsI	RAATTY	2 cut(s)	125, 133
AfaI	GTAC	4 cut(s)	42, 81, 102, 178
AgsI	TTSAA	1 cut(s)	26
AjuI	GAANNNNNNNTTGG	2 cut(s)	123, 155
AluBI	AGCT	1 cut(s)	188
AluI	AGCT	1 cut(s)	188
AlwNI	CAGNNNCTG	1 cut(s)	83
ApoI	RAATTY	2 cut(s)	125, 133
BccI	CCATC	1 cut(s)	64
BfmI	CTRYAG	2 cut(s)	84, 180
BfuAI	ACCTGC	1 cut(s)	91
BmcAI	AGTACT	1 cut(s)	178
BseGI	GGATG	1 cut(s)	145
BslFI	GGGAC	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	214
BspMAI	CTGCAG	2 cut(s)	88, 184
BspMI	ACCTGC	1 cut(s)	91
Bst4CI	ACNGT	3 cut(s)	40, 100, 163
BstF5I	GGATG	1 cut(s)	145
BstSFI	CTRYAG	2 cut(s)	84, 180
BtsCI	GGATG	1 cut(s)	145
BveI	ACCTGC	1 cut(s)	91
CaiI	CAGNNNCTG	1 cut(s)	83
Csp6I	GTAC	4 cut(s)	41, 80, 101, 177
CviJI	RGCY	1 cut(s)	188
CviKI_1	RGCY	1 cut(s)	188
CviQI	GTAC	4 cut(s)	41, 80, 101, 177
FaqI	GGGAC	1 cut(s)	214
FokI	GGATG	1 cut(s)	132
HpyCH4III	ACNGT	3 cut(s)	40, 100, 163
HpyCH4V	TGCA	2 cut(s)	86, 182
LmnI	GCTCC	1 cut(s)	206
LpnPI	CCDG	2 cut(s)	72, 96
MluCI	AATT	2 cut(s)	125, 133
MseI	TTAA	3 cut(s)	95, 120, 250
PstI	CTGCAG	2 cut(s)	88, 184
PstNI	CAGNNNCTG	1 cut(s)	83
RsaI	GTAC	4 cut(s)	42, 81, 102, 178
RsaNI	GTAC	4 cut(s)	41, 80, 101, 177
SaqAI	TTAA	3 cut(s)	95, 120, 250
SbfI	CCTGCAGG	1 cut(s)	88
ScaI	AGTACT	1 cut(s)	178
SdaI	CCTGCAGG	1 cut(s)	88
SetI	ASST	5 cut(s)	85, 106, 190, 220, 244
SfcI	CTRYAG	2 cut(s)	84, 180
SgeI	CNNG	4 cut(s)	29, 95, 99, 161
Sse8387I	CCTGCAGG	1 cut(s)	88
Sse9I	AATT	2 cut(s)	125, 133
TaaI	ACNGT	3 cut(s)	40, 100, 163
TasI	AATT	2 cut(s)	125, 133
TatI	WGTACW	1 cut(s)	176
Tru1I	TTAA	3 cut(s)	95, 120, 250
Tru9I	TTAA	3 cut(s)	95, 120, 250
TspDTI	ATGAA	1 cut(s)	126
XapI	RAATTY	2 cut(s)	125, 133
ZrmI	AGTACT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.