RchiOBHm_Chr3g0486821

NPR1 interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0018926
Physical Location & Seq
Reverse (-)
33777268 .. 33777842
575 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 432 bp
ATGGCGGAAAACGAGAAGAAGACTGATGATCGTCAGGAACAAGAAGAAGAAGAAGAAGAGGAGATGGAGAAGATAGAGAAGTTCTATTCCCTCATCAGACACTTTCGCGAGGCTCGAAATCGTCTGATCGGATTACGAAAGACACGGCCAAACCATGAGGTCGGCGATGAAGTGGAGCAGGAGAAGATGAAAACCAGCAAGAAAAGGAAGAAAACGGGCGATGATGATCGTGATCATGAACGGAGATTGAGTACTTGGGTGCCATCATTTGAATGCGAGGATTTCACCAACAAAGAGGTTGAGTATCCAGGAACTTGTCTAAGCTTCCCTGCTCTTCCTTGTAACACTAGTGGTAACACTAGCAATAATGGTAAAGAAAAAGTAGAAGATGATGATGCTTCAGAGTGTCTGGACCTTCGACTTGCCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NPR1_interact

Protein Analysis

143

Amino Acids

16.82

Weight (kDa)

4.89

Isoelectric Point (pI)

62.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPR1_interact PF15699 17 - 139 1e-17 NPR1 interacting
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018926)

Species Orthologous Gene IDs
pyrus_communis pycom09g19480
rosa_chinensis RchiOBHm_Chr3g0486821
rosa_laevigata RLG00000023060
rosa_roxburghii Rroxscaffold_6G00395560
rosa_rugosa Rorug03G0227300
rosa_samantha Rh3AG277400 Rh3BG312400 Rh3CG311400 Rh3DG307900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 259
AccII CGCG 1 cut(s) 108
AciI CCGC 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 146
AcuI CTGAAG 1 cut(s) 384
AfaI GTAC 1 cut(s) 253
AgsI TTSAA 1 cut(s) 272
AhlI ACTAGT 1 cut(s) 347
AjnI CCWGG 1 cut(s) 307
AluBI AGCT 1 cut(s) 324
AluI AGCT 1 cut(s) 324
AoxI GGCC 1 cut(s) 146
AspS9I GGNCC 1 cut(s) 412
AsuHPI GGTGA 1 cut(s) 277
AvaII GGWCC 1 cut(s) 412
BanI GGYRCC 1 cut(s) 259
BbsI GAAGAC 1 cut(s) 26
BccI CCATC 2 cut(s) 58, 271
BceAI ACGGC 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 309
BciVI GTATCC 1 cut(s) 315
BclI TGATCA 1 cut(s) 232
BcuI ACTAGT 1 cut(s) 347
BfaI CTAG 2 cut(s) 348, 360
BfuI GTATCC 1 cut(s) 315
BmcAI AGTACT 1 cut(s) 253
Bme1390I CCNGG 1 cut(s) 309
Bme18I GGWCC 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 412
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 309
BmsI GCATC 1 cut(s) 385
BpiI GAAGAC 1 cut(s) 26
BsaBI GATNNNNATC 2 cut(s) 225, 231
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bse8I GATNNNNATC 2 cut(s) 225, 231
BseBI CCWGG 1 cut(s) 309
BseJI GATNNNNATC 2 cut(s) 225, 231
BseRI GAGGAG 1 cut(s) 74
Bsh1236I CGCG 1 cut(s) 108
BshFI GGCC 1 cut(s) 148
BshNI GGYRCC 1 cut(s) 259
BsmI GAATGC 1 cut(s) 278
BsnI GGCC 1 cut(s) 148
Bsp143I GATC 4 cut(s) 28, 126, 226, 232
Bsp68I TCGCGA 1 cut(s) 108
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 148
BspFNI CGCG 1 cut(s) 108
BspHI TCATGA 1 cut(s) 235
BspLI GGNNCC 1 cut(s) 261
BspQI GCTCTTC 1 cut(s) 339
BspT107I GGYRCC 1 cut(s) 259
BssMI GATC 4 cut(s) 28, 126, 226, 232
Bst2UI CCWGG 1 cut(s) 309
Bst6I CTCTTC 2 cut(s) 51, 339
BstDEI CTNAG 1 cut(s) 320
BstFNI CGCG 1 cut(s) 108
BstKTI GATC 4 cut(s) 31, 129, 229, 235
BstMBI GATC 4 cut(s) 28, 126, 226, 232
BstNI CCWGG 1 cut(s) 309
BstSCI CCNGG 1 cut(s) 307
BstUI CGCG 1 cut(s) 108
BstV2I GAAGAC 1 cut(s) 26
BsuI GTATCC 1 cut(s) 315
BsuRI GGCC 1 cut(s) 148
BtgZI GCGATG 2 cut(s) 180, 234
BtuMI TCGCGA 1 cut(s) 108
CciI TCATGA 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 412
Csp6I GTAC 1 cut(s) 252
CviAII CATG 2 cut(s) 155, 236
CviJI RGCY 3 cut(s) 113, 148, 324
CviKI_1 RGCY 3 cut(s) 113, 148, 324
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 1 cut(s) 320
DpnI GATC 4 cut(s) 30, 128, 228, 234
DpnII GATC 4 cut(s) 28, 126, 226, 232
EaeI YGGCCR 1 cut(s) 146
Eam1104I CTCTTC 2 cut(s) 51, 339
EarI CTCTTC 2 cut(s) 51, 339
EciI GGCGGA 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 412
Eco57I CTGAAG 1 cut(s) 384
EcoRII CCWGG 1 cut(s) 307
FaeI CATG 2 cut(s) 158, 239
FaiI YATR 2 cut(s) 156, 237
FatI CATG 2 cut(s) 154, 235
FbaI TGATCA 1 cut(s) 232
FspBI CTAG 2 cut(s) 348, 360
HaeIII GGCC 1 cut(s) 148
Hin1II CATG 2 cut(s) 158, 239
HindIII AAGCTT 1 cut(s) 322
HphI GGTGA 1 cut(s) 277
Hpy188I TCNGA 4 cut(s) 98, 126, 131, 403
Hpy188III TCNNGA 5 cut(s) 35, 107, 230, 236, 410
HpyAV CCTTC 1 cut(s) 425
HpyF3I CTNAG 1 cut(s) 320
Hsp92II CATG 2 cut(s) 158, 239
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 4 cut(s) 28, 126, 226, 232
LguI GCTCTTC 1 cut(s) 339
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 7 cut(s) 20, 164, 208, 294, 321, 342, 395
LweI GCATC 1 cut(s) 385
MaeI CTAG 2 cut(s) 348, 360
MaeIII GTNAC 2 cut(s) 341, 353
MalI GATC 4 cut(s) 30, 128, 228, 234
MboI GATC 4 cut(s) 28, 126, 226, 232
MnlI CCTC 6 cut(s) 52, 101, 103, 151, 271, 289
MslI CAYNNNNRTG 1 cut(s) 271
MspR9I CCNGG 1 cut(s) 309
Mva1269I GAATGC 1 cut(s) 278
MvaI CCWGG 1 cut(s) 309
MvnI CGCG 1 cut(s) 108
NdeII GATC 4 cut(s) 28, 126, 226, 232
NlaIII CATG 2 cut(s) 158, 239
NlaIV GGNNCC 1 cut(s) 261
NruI TCGCGA 1 cut(s) 108
PagI TCATGA 1 cut(s) 235
PciSI GCTCTTC 1 cut(s) 339
PcsI WCGNNNNNNNCGW 1 cut(s) 112
PctI GAATGC 1 cut(s) 278
PfoI TCCNGGA 1 cut(s) 307
Psp6I CCWGG 1 cut(s) 307
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 1 cut(s) 412
RruI TCGCGA 1 cut(s) 108
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
RseI CAYNNNNRTG 1 cut(s) 271
SapI GCTCTTC 1 cut(s) 339
Sau3AI GATC 4 cut(s) 28, 126, 226, 232
Sau96I GGNCC 1 cut(s) 412
ScaI AGTACT 1 cut(s) 253
ScrFI CCNGG 1 cut(s) 309
SetI ASST 4 cut(s) 162, 300, 326, 417
SfaNI GCATC 1 cut(s) 385
SinI GGWCC 1 cut(s) 412
SmiMI CAYNNNNRTG 1 cut(s) 271
SpeI ACTAGT 1 cut(s) 347
SsiI CCGC 1 cut(s) 5
SspMI CTAG 2 cut(s) 348, 360
StyD4I CCNGG 1 cut(s) 307
TaqI TCGA 2 cut(s) 115, 418
TatI WGTACW 1 cut(s) 251
TspDTI ATGAA 3 cut(s) 183, 203, 252
TspGWI ACGGA 1 cut(s) 256
VpaK11BI GGWCC 1 cut(s) 412
XspI CTAG 2 cut(s) 348, 360
ZrmI AGTACT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.