RchiOBHm_Chr3g0491931

Aldehyde dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0019810
Physical Location & Seq
Reverse (-)
38716654 .. 38717490
837 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 474 bp
ATGATAGTTGATAAAAAGCAGTTTGAGAAAATCTTGACCTACATTGAGCAGGGGAAAAGAGAAGGAGAAACTTTGTTAACAGGAGGAAAGCCTGTGGGGAAGAAGGGTTATTACATTGAGCCAACAGTATTCACTGATGTCAAGGATGATATGCTTATTGCTAAGGATGAAATATTTGGACCTGTAATGTCGCTAATGAAGTTCAACCAACAACACCAAGTATGGCCTAGCTGCATGCATTGTAACCAAGAACGTCATGTGGCTAACACCGTCTCAAGATCAATCCGCGCAGGCATTATATGGATCAACTGCTACTTTGCCTTCGACCGCGATTGCCCTTATGGTGGATACAAGATGACTGGCTTTGGAAGATACTTTGGTACGCAGGGCCTCCACAAGTACCTGCATACTAGGGGTGGGTTCGGTTTGGTTTGGTTTGGTTTTAGGCCAAAATTGAAAACTGAACCGAACTAG

Protein Analysis

157

Amino Acids

18.13

Weight (kDa)

9.26

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 2 - 137 3.7e-33 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019810)

Species Orthologous Gene IDs
pyrus_communis pycom02g04130 pycom02g04150 pycom02g04170
rosa_chinensis RchiOBHm_Chr3g0491931
rosa_multiflora Rmu_sc0023176.1_g000001 Rmu_sc0041478.1_g000001
rosa_samantha Rh3CG333900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 411
AccII CGCG 2 cut(s) 288, 330
AciI CCGC 2 cut(s) 286, 328
AclWI GGATC 1 cut(s) 311
AfaI GTAC 2 cut(s) 382, 401
AfiI CCNNNNNNNGG 1 cut(s) 344
AgsI TTSAA 2 cut(s) 205, 457
AluBI AGCT 1 cut(s) 231
AluI AGCT 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 277
AlwI GGATC 1 cut(s) 311
AoxI GGCC 3 cut(s) 224, 388, 446
ApeKI GCWGC 1 cut(s) 231
AspLEI GCGC 1 cut(s) 290
AspS9I GGNCC 2 cut(s) 179, 388
AvaII GGWCC 1 cut(s) 179
BaeI ACNNNNGTAYC 2 cut(s) 364, 397
BarI GAAGNNNNNNTAC 2 cut(s) 95, 127
BbvI GCAGC 1 cut(s) 218
BciVI GTATCC 1 cut(s) 341
BcoDI GTCTC 1 cut(s) 277
BfaI CTAG 3 cut(s) 228, 411, 472
BfuAI ACCTGC 1 cut(s) 411
BfuI GTATCC 1 cut(s) 341
BisI GCNGC 1 cut(s) 232
BlsI GCNGC 1 cut(s) 233
Bme18I GGWCC 1 cut(s) 179
BmgT120I GGNCC 2 cut(s) 179, 388
Bpu10I CCTNAGC 1 cut(s) 162
BpuEI CTTGAG 1 cut(s) 259
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse1I ACTGG 1 cut(s) 364
BseGI GGATG 2 cut(s) 151, 172
BseLI CCNNNNNNNGG 1 cut(s) 344
BseNI ACTGG 1 cut(s) 364
BseXI GCAGC 1 cut(s) 218
Bsh1236I CGCG 2 cut(s) 288, 330
Bsh1285I CGRYCG 1 cut(s) 328
BshFI GGCC 3 cut(s) 226, 390, 448
BsiEI CGRYCG 1 cut(s) 328
BslI CCNNNNNNNGG 1 cut(s) 344
BsmAI GTCTC 1 cut(s) 277
BsmBI CGTCTC 1 cut(s) 277
BsnI GGCC 3 cut(s) 226, 390, 448
Bsp143I GATC 2 cut(s) 278, 303
BspACI CCGC 2 cut(s) 286, 328
BspANI GGCC 3 cut(s) 226, 390, 448
BspFNI CGCG 2 cut(s) 288, 330
BspMI ACCTGC 1 cut(s) 411
BspPI GGATC 1 cut(s) 311
BsrI ACTGG 1 cut(s) 364
BssMI GATC 2 cut(s) 278, 303
Bst4CI ACNGT 2 cut(s) 127, 271
BstC8I GCNNGC 2 cut(s) 236, 292
BstDEI CTNAG 1 cut(s) 162
BstF5I GGATG 2 cut(s) 151, 172
BstFNI CGCG 2 cut(s) 288, 330
BstHHI GCGC 1 cut(s) 290
BstKTI GATC 2 cut(s) 281, 306
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 2 cut(s) 278, 303
BstMCI CGRYCG 1 cut(s) 328
BstNSI RCATGY 1 cut(s) 238
BstUI CGCG 2 cut(s) 288, 330
BstV1I GCAGC 1 cut(s) 218
BsuI GTATCC 1 cut(s) 341
BsuRI GGCC 3 cut(s) 226, 390, 448
BtsCI GGATG 2 cut(s) 151, 172
BtsIMutI CAGTG 1 cut(s) 132
BveI ACCTGC 1 cut(s) 411
Cac8I GCNNGC 2 cut(s) 236, 292
CfoI GCGC 1 cut(s) 290
Cfr13I GGNCC 2 cut(s) 179, 388
Csp6I GTAC 2 cut(s) 381, 400
CviAII CATG 2 cut(s) 235, 257
CviJI RGCY 8 cut(s) 91, 121, 226, 231, 263, 363, 390, 448
CviKI_1 RGCY 8 cut(s) 91, 121, 226, 231, 263, 363, 390, 448
CviQI GTAC 2 cut(s) 381, 400
DdeI CTNAG 1 cut(s) 162
DpnI GATC 2 cut(s) 280, 305
DpnII GATC 2 cut(s) 278, 303
Eco47I GGWCC 1 cut(s) 179
EcoO109I RGGNCCY 1 cut(s) 388
EcoT22I ATGCAT 1 cut(s) 240
Esp3I CGTCTC 1 cut(s) 277
FaeI CATG 2 cut(s) 238, 260
FaiI YATR 8 cut(s) 152, 223, 236, 258, 299, 301, 342, 408
FatI CATG 2 cut(s) 234, 256
Fnu4HI GCNGC 1 cut(s) 232
FokI GGATG 2 cut(s) 158, 179
Fsp4HI GCNGC 1 cut(s) 232
FspBI CTAG 3 cut(s) 228, 411, 472
GlaI GCGC 1 cut(s) 289
GluI GCNGC 1 cut(s) 232
HaeIII GGCC 3 cut(s) 226, 390, 448
HhaI GCGC 1 cut(s) 290
Hin1II CATG 2 cut(s) 238, 260
Hin6I GCGC 1 cut(s) 288
HinP1I GCGC 1 cut(s) 288
HincII GTYRAC 1 cut(s) 78
HindII GTYRAC 1 cut(s) 78
HpaI GTTAAC 1 cut(s) 78
Hpy166II GTNNAC 1 cut(s) 78
Hpy188III TCNNGA 2 cut(s) 34, 276
Hpy8I GTNNAC 1 cut(s) 78
HpyAV CCTTC 3 cut(s) 56, 97, 331
HpyCH4III ACNGT 2 cut(s) 127, 271
HpyCH4IV ACGT 1 cut(s) 253
HpyCH4V TGCA 3 cut(s) 234, 238, 406
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 1 cut(s) 253
Hsp92II CATG 2 cut(s) 238, 260
HspAI GCGC 1 cut(s) 288
KspAI GTTAAC 1 cut(s) 78
Kzo9I GATC 2 cut(s) 278, 303
LpnPI CCDG 8 cut(s) 35, 66, 105, 195, 276, 345, 371, 416
Lsp1109I GCAGC 1 cut(s) 218
MaeI CTAG 3 cut(s) 228, 411, 472
MaeII ACGT 1 cut(s) 253
MaeIII GTNAC 1 cut(s) 242
MalI GATC 2 cut(s) 280, 305
MboI GATC 2 cut(s) 278, 303
MboII GAAGA 2 cut(s) 112, 381
MluCI AATT 1 cut(s) 452
MnlI CCTC 2 cut(s) 77, 401
Mph1103I ATGCAT 1 cut(s) 240
MseI TTAA 1 cut(s) 77
MvnI CGCG 2 cut(s) 288, 330
NdeII GATC 2 cut(s) 278, 303
NlaIII CATG 2 cut(s) 238, 260
NsiI ATGCAT 1 cut(s) 240
NspI RCATGY 1 cut(s) 238
PaeI GCATGC 1 cut(s) 238
PkrI GCNGC 1 cut(s) 233
PspPI GGNCC 2 cut(s) 179, 388
RsaI GTAC 2 cut(s) 382, 401
RsaNI GTAC 2 cut(s) 381, 400
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 1 cut(s) 232
Sau3AI GATC 2 cut(s) 278, 303
Sau96I GGNCC 2 cut(s) 179, 388
SetI ASST 5 cut(s) 41, 184, 233, 256, 405
SinI GGWCC 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
SphI GCATGC 1 cut(s) 238
Sse9I AATT 1 cut(s) 452
SsiI CCGC 2 cut(s) 286, 328
SspI AATATT 1 cut(s) 174
SspMI CTAG 3 cut(s) 228, 411, 472
TaaI ACNGT 2 cut(s) 127, 271
TaiI ACGT 1 cut(s) 256
TaqI TCGA 1 cut(s) 324
TasI AATT 1 cut(s) 452
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TscAI CASTG 1 cut(s) 139
TseI GCWGC 1 cut(s) 231
TspDTI ATGAA 2 cut(s) 183, 212
TspRI CASTG 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 179
XceI RCATGY 1 cut(s) 238
XspI CTAG 3 cut(s) 228, 411, 472
Zsp2I ATGCAT 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.