Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0091491 |
| rosa_laevigata | RLG00000016228 |
| rosa_multiflora | Rmu_sc0002407.1_g000011 |
| rosa_roxburghii | Rroxscaffold_2G00150030 |
| rosa_rugosa | Rorug02G0018200 |
| rosa_samantha | Rh2AG063200 Rh2BG062800 Rh2CG064500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 442 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 776 |
| Acc36I | ACCTGC | 2 cut(s) | 442, 738 |
| AccI | GTMKAC | 1 cut(s) | 98 |
| AccIII | TCCGGA | 1 cut(s) | 150 |
| AcuI | CTGAAG | 1 cut(s) | 677 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 157 |
| AgsI | TTSAA | 2 cut(s) | 220, 627 |
| AluBI | AGCT | 7 cut(s) | 41, 301, 507, 697, 740, 786, 797 |
| AluI | AGCT | 7 cut(s) | 41, 301, 507, 697, 740, 786, 797 |
| Alw21I | GWGCWC | 1 cut(s) | 150 |
| Alw26I | GTCTC | 1 cut(s) | 331 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 522 |
| Aor13HI | TCCGGA | 1 cut(s) | 150 |
| AseI | ATTAAT | 1 cut(s) | 6 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 63, 432 |
| AspLEI | GCGC | 1 cut(s) | 354 |
| AsuHPI | GGTGA | 3 cut(s) | 278, 671, 709 |
| BbsI | GAAGAC | 1 cut(s) | 774 |
| Bbv12I | GWGCWC | 1 cut(s) | 150 |
| BccI | CCATC | 2 cut(s) | 382, 455 |
| BcoDI | GTCTC | 1 cut(s) | 331 |
| BfmI | CTRYAG | 2 cut(s) | 394, 781 |
| BfuAI | ACCTGC | 2 cut(s) | 442, 738 |
| BmsI | GCATC | 4 cut(s) | 438, 509, 598, 678 |
| BpiI | GAAGAC | 1 cut(s) | 774 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 578, 610 |
| BsaJI | CCNNGG | 1 cut(s) | 617 |
| BsaWI | WCCGGW | 2 cut(s) | 150, 709 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 157 |
| BseAI | TCCGGA | 1 cut(s) | 150 |
| BseDI | CCNNGG | 1 cut(s) | 617 |
| BseGI | GGATG | 4 cut(s) | 97, 277, 595, 613 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 157 |
| BseYI | CCCAGC | 1 cut(s) | 503 |
| BsgI | GTGCAG | 1 cut(s) | 425 |
| BsiHKAI | GWGCWC | 1 cut(s) | 150 |
| BsiSI | CCGG | 3 cut(s) | 151, 197, 710 |
| BslFI | GGGAC | 1 cut(s) | 152 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 157 |
| BsmAI | GTCTC | 1 cut(s) | 331 |
| BsmBI | CGTCTC | 1 cut(s) | 331 |
| BsmFI | GGGAC | 1 cut(s) | 152 |
| Bsp1286I | GDGCHC | 1 cut(s) | 150 |
| Bsp13I | TCCGGA | 1 cut(s) | 150 |
| BspEI | TCCGGA | 1 cut(s) | 150 |
| BspMI | ACCTGC | 2 cut(s) | 442, 738 |
| BssECI | CCNNGG | 1 cut(s) | 617 |
| BssNAI | GTATAC | 1 cut(s) | 99 |
| BssT1I | CCWWGG | 1 cut(s) | 617 |
| Bst1107I | GTATAC | 1 cut(s) | 99 |
| Bst4CI | ACNGT | 4 cut(s) | 35, 238, 639, 820 |
| Bst6I | CTCTTC | 2 cut(s) | 166, 314 |
| BstF5I | GGATG | 4 cut(s) | 97, 277, 595, 613 |
| BstHHI | GCGC | 1 cut(s) | 354 |
| BstMAI | GTCTC | 1 cut(s) | 331 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 358 |
| BstSFI | CTRYAG | 2 cut(s) | 394, 781 |
| BstV2I | GAAGAC | 1 cut(s) | 774 |
| BstZ17I | GTATAC | 1 cut(s) | 99 |
| BtsCI | GGATG | 4 cut(s) | 97, 277, 595, 613 |
| BtsIMutI | CAGTG | 2 cut(s) | 40, 825 |
| BveI | ACCTGC | 2 cut(s) | 442, 738 |
| CaiI | CAGNNNCTG | 1 cut(s) | 522 |
| CfoI | GCGC | 1 cut(s) | 354 |
| CseI | GACGC | 1 cut(s) | 405 |
| CviAII | CATG | 3 cut(s) | 166, 355, 549 |
| CviJI | RGCY | 9 cut(s) | 41, 223, 301, 507, 668, 697, 740, 786, 797 |
| CviKI_1 | RGCY | 9 cut(s) | 41, 223, 301, 507, 668, 697, 740, 786, 797 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 776 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 776 |
| Eam1104I | CTCTTC | 2 cut(s) | 166, 314 |
| EarI | CTCTTC | 2 cut(s) | 166, 314 |
| Eco130I | CCWWGG | 1 cut(s) | 617 |
| Eco32I | GATATC | 2 cut(s) | 633, 715 |
| Eco57I | CTGAAG | 1 cut(s) | 677 |
| EcoRV | GATATC | 2 cut(s) | 633, 715 |
| EcoT14I | CCWWGG | 1 cut(s) | 617 |
| ErhI | CCWWGG | 1 cut(s) | 617 |
| Esp3I | CGTCTC | 1 cut(s) | 331 |
| FaeI | CATG | 3 cut(s) | 169, 358, 552 |
| FaqI | GGGAC | 1 cut(s) | 152 |
| FatI | CATG | 3 cut(s) | 165, 354, 548 |
| FblI | GTMKAC | 1 cut(s) | 98 |
| FokI | GGATG | 4 cut(s) | 104, 284, 602, 620 |
| GlaI | GCGC | 1 cut(s) | 353 |
| GsaI | CCCAGC | 1 cut(s) | 507 |
| HapII | CCGG | 3 cut(s) | 151, 197, 710 |
| HgaI | GACGC | 1 cut(s) | 405 |
| HhaI | GCGC | 1 cut(s) | 354 |
| Hin1II | CATG | 3 cut(s) | 169, 358, 552 |
| Hin6I | GCGC | 1 cut(s) | 352 |
| HinP1I | GCGC | 1 cut(s) | 352 |
| HindIII | AAGCTT | 1 cut(s) | 39 |
| HinfI | GANTC | 5 cut(s) | 244, 433, 579, 593, 702 |
| HpaII | CCGG | 3 cut(s) | 151, 197, 710 |
| HphI | GGTGA | 3 cut(s) | 278, 671, 709 |
| Hpy166II | GTNNAC | 3 cut(s) | 31, 99, 234 |
| Hpy188I | TCNGA | 2 cut(s) | 421, 518 |
| Hpy188III | TCNNGA | 3 cut(s) | 151, 563, 753 |
| Hpy8I | GTNNAC | 3 cut(s) | 31, 99, 234 |
| HpyAV | CCTTC | 3 cut(s) | 172, 560, 648 |
| HpyCH4III | ACNGT | 4 cut(s) | 35, 238, 639, 820 |
| HpyCH4V | TGCA | 5 cut(s) | 406, 451, 572, 611, 791 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 358 |
| Hsp92II | CATG | 3 cut(s) | 169, 358, 552 |
| HspAI | GCGC | 1 cut(s) | 352 |
| Kpn2I | TCCGGA | 1 cut(s) | 150 |
| LmnI | GCTCC | 3 cut(s) | 153, 298, 413 |
| LweI | GCATC | 4 cut(s) | 438, 509, 598, 678 |
| MaeIII | GTNAC | 1 cut(s) | 74 |
| MboII | GAAGA | 6 cut(s) | 183, 331, 437, 457, 470, 779 |
| MhlI | GDGCHC | 1 cut(s) | 150 |
| MluCI | AATT | 3 cut(s) | 281, 428, 807 |
| MlyI | GAGTC | 2 cut(s) | 587, 588 |
| MnlI | CCTC | 6 cut(s) | 124, 262, 288, 580, 655, 817 |
| MroI | TCCGGA | 1 cut(s) | 150 |
| MroXI | GAANNNNTTC | 2 cut(s) | 63, 432 |
| MseI | TTAA | 2 cut(s) | 6, 528 |
| MslI | CAYNNNNRTG | 1 cut(s) | 547 |
| MspA1I | CMGCKG | 1 cut(s) | 797 |
| MspI | CCGG | 3 cut(s) | 151, 197, 710 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 358 |
| NlaIII | CATG | 3 cut(s) | 169, 358, 552 |
| PaqCI | CACCTGC | 1 cut(s) | 442 |
| PdmI | GAANNNNTTC | 2 cut(s) | 63, 432 |
| PfeI | GAWTC | 3 cut(s) | 244, 433, 702 |
| PleI | GAGTC | 2 cut(s) | 587, 587 |
| PpsI | GAGTC | 2 cut(s) | 587, 587 |
| PshBI | ATTAAT | 1 cut(s) | 6 |
| PspFI | CCCAGC | 1 cut(s) | 503 |
| PstNI | CAGNNNCTG | 1 cut(s) | 522 |
| PvuII | CAGCTG | 1 cut(s) | 797 |
| RseI | CAYNNNNRTG | 1 cut(s) | 547 |
| SaqAI | TTAA | 2 cut(s) | 6, 528 |
| SchI | GAGTC | 2 cut(s) | 587, 588 |
| SduI | GDGCHC | 1 cut(s) | 150 |
| SfaNI | GCATC | 4 cut(s) | 438, 509, 598, 678 |
| SfcI | CTRYAG | 2 cut(s) | 394, 781 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 547 |
| Sse9I | AATT | 3 cut(s) | 281, 428, 807 |
| SspI | AATATT | 1 cut(s) | 84 |
| StyI | CCWWGG | 1 cut(s) | 617 |
| TaaI | ACNGT | 4 cut(s) | 35, 238, 639, 820 |
| TaqI | TCGA | 1 cut(s) | 107 |
| TasI | AATT | 3 cut(s) | 281, 428, 807 |
| TfiI | GAWTC | 3 cut(s) | 244, 433, 702 |
| Tru1I | TTAA | 2 cut(s) | 6, 528 |
| Tru9I | TTAA | 2 cut(s) | 6, 528 |
| TscAI | CASTG | 2 cut(s) | 40, 825 |
| TspDTI | ATGAA | 7 cut(s) | 154, 204, 293, 371, 438, 537, 780 |
| TspRI | CASTG | 2 cut(s) | 40, 825 |
| VspI | ATTAAT | 1 cut(s) | 6 |
| XmiI | GTMKAC | 1 cut(s) | 98 |
| XmnI | GAANNNNTTC | 2 cut(s) | 63, 432 |