Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004337

Physical Location & Seq

Genomic Coordinates Reverse (-)

1511808 .. 1516386

Gene Structure 4579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0018200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTATCAACTGTCTCAGACCATATCAGTTCATAGCTCACACCCCTTTGCAATGGCTGCAATCTTCCAAACACTGCTCCCCATTTGTTCTTCTTCAAGCTCAAGGCAGACTCCATGGAATACTCCCTCCAGACCCATCTCAGATTCCATGGCCTCTTTGCCCATTTCACACTTATATAGGCAGCAAGGGCAAACAGCAGTCTCAGTTGCCTTCAACCCTTCTGGGAATTTTGACCTCCCTCTATATGATGATGAAGAAGACACATCTAAGGTTGAGCCTCCAATGCCACCAAGTGAAGGCAGATTTGAGATTGTTATTGACAATGATGTAATTCGTAGTCTCGACTTAACTCCATTTCATACTGTAACTGGCATTACTAATCCTTCATCAGCCAAGCCAAAAGAGTACCTTGAGCGTACAATTGGCTTTACCATTAATTACACAAGAGAAGATCCTCGCGATCCTCGAGAGCTATCCGAGTTTCCTGATATAAGGCTATGGTTTTTGAGACTTGATGCTGCTTATCCTTGGTTGCCTGTGCTCTTGGATTGGCGAGCCGGAGAGCTAGCTCGTTATGCTGCTATGTTGGTGCCACATCAGATGAATATGAGGATGGGTGTTGTGTTCAATCCTGAGGCACTAGAACTGTTTGTTATGCAGAAAGTTTTTGTTGTGTACTTGTGGCTGAAGCAACACAACATTCCAAAGCCTAGATTGAAGACTAGTGACATGGCTAGAATGCTCGGGTTTGGTATTGGAGATGAGCTTTATGATTTGATTGATAAACATCCGATTTCCACATCATCAAAACACAAAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

273

Amino Acids

31.1

Weight (kDa)

5.9

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Crr6	PF08847	106 - 259	4e-59	Chlororespiratory reduction 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11590 AT5G25810
fragaria_vesca	FvH4_1g05820 FvH4_2g35620
malus_domestica	MD02G1060200.v1.1 MD08G1114100.v1.1 MD15G1093800.v1.1 MD15G1193700.v1.1
prunus_persica	Prupe.1G448600_v2.0.a1 Prupe.7G222700_v2.0.a1
pyrus_communis	pycom02g04920 pycom08g09510 pycom15g17340
rosa_chinensis	RchiOBHm_Chr2g0091471 RchiOBHm_Chr6g0306191
rosa_laevigata	RLG00000010815 RLG00000016227
rosa_multiflora	Rmu_sc0002407.1_g000015 Rmu_sc0003594.1_g000007
rosa_roxburghii	Rroxscaffold_2G00150040 Rroxscaffold_7G00161970
rosa_rugosa	Rorug02G0018200 Rorug06G0347800
rosa_samantha	Rh2BG062600 Rh2CG064300 Rh2DG062700 Rh6AG460400 Rh6BG441000 Rh6CG474400 Rh6DG460700
rosa_wichuraiana	Rw2G005700 Rw6G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	589
AccII	CGCG	1 cut(s)	459
AclWI	GGATC	2 cut(s)	446, 455
AcsI	RAATTY	1 cut(s)	226
AcuI	CTGAAG	1 cut(s)	707
AdeI	CACNNNGTG	1 cut(s)	293
AfaI	GTAC	3 cut(s)	407, 418, 677
AfiI	CCNNNNNNNGG	1 cut(s)	296
AgsI	TTSAA	4 cut(s)	96, 214, 628, 718
AhlI	ACTAGT	1 cut(s)	722
AluBI	AGCT	6 cut(s)	36, 99, 472, 565, 569, 766
AluI	AGCT	6 cut(s)	36, 99, 472, 565, 569, 766
Alw21I	GWGCWC	1 cut(s)	543
Alw26I	GTCTC	4 cut(s)	18, 205, 344, 502
AlwI	GGATC	2 cut(s)	446, 455
Ama87I	CYCGRG	2 cut(s)	465, 743
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	4 cut(s)	56, 181, 518, 578
ApoI	RAATTY	1 cut(s)	226
AseI	ATTAAT	1 cut(s)	435
AsuNHI	GCTAGC	1 cut(s)	565
AvaI	CYCGRG	2 cut(s)	465, 743
AxyI	CCTNAGG	1 cut(s)	633
BanI	GGYRCC	1 cut(s)	589
BbsI	GAAGAC	2 cut(s)	264, 725
Bbv12I	GWGCWC	1 cut(s)	543
BbvI	GCAGC	4 cut(s)	43, 193, 505, 565
BccI	CCATC	2 cut(s)	143, 607
BcoDI	GTCTC	4 cut(s)	18, 205, 344, 502
BcuI	ACTAGT	1 cut(s)	722
BfaI	CTAG	5 cut(s)	566, 641, 711, 723, 735
BisI	GCNGC	4 cut(s)	57, 182, 519, 579
BlsI	GCNGC	4 cut(s)	58, 183, 520, 580
BmeT110I	CYCGRG	2 cut(s)	465, 743
BmiI	GGNNCC	1 cut(s)	591
BmsI	GCATC	1 cut(s)	505
BmtI	GCTAGC	1 cut(s)	569
BpiI	GAAGAC	2 cut(s)	264, 725
BpmI	CTGGAG	1 cut(s)	112
BpuEI	CTTGAG	2 cut(s)	85, 431
BsaBI	GATNNNNATC	1 cut(s)	786
BsaJI	CCNNGG	3 cut(s)	113, 147, 527
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse1I	ACTGG	1 cut(s)	373
Bse21I	CCTNAGG	1 cut(s)	633
Bse3DI	GCAATG	1 cut(s)	57
Bse8I	GATNNNNATC	1 cut(s)	786
BseDI	CCNNGG	3 cut(s)	113, 147, 527
BseGI	GGATG	2 cut(s)	618, 787
BseJI	GATNNNNATC	1 cut(s)	786
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	4 cut(s)	29, 153, 216, 624
BseNI	ACTGG	1 cut(s)	373
BseXI	GCAGC	4 cut(s)	43, 193, 505, 565
Bsh1236I	CGCG	1 cut(s)	459
BshFI	GGCC	1 cut(s)	152
BshNI	GGYRCC	1 cut(s)	589
BsiHKAI	GWGCWC	1 cut(s)	543
BsiHKCI	CYCGRG	2 cut(s)	465, 743
BsiSI	CCGG	1 cut(s)	558
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmAI	GTCTC	4 cut(s)	18, 205, 344, 502
BsmI	GAATGC	1 cut(s)	744
BsnI	GGCC	1 cut(s)	152
BsoBI	CYCGRG	2 cut(s)	465, 743
Bsp1286I	GDGCHC	1 cut(s)	543
Bsp143I	GATC	2 cut(s)	451, 460
Bsp19I	CCATGG	2 cut(s)	113, 147
Bsp68I	TCGCGA	1 cut(s)	459
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	4 cut(s)	28, 152, 215, 625
BspFNI	CGCG	1 cut(s)	459
BspLI	GGNNCC	1 cut(s)	591
BspOI	GCTAGC	1 cut(s)	569
BspPI	GGATC	2 cut(s)	446, 455
BspT107I	GGYRCC	1 cut(s)	589
BsrDI	GCAATG	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	373
BssECI	CCNNGG	3 cut(s)	113, 147, 527
BssMI	GATC	2 cut(s)	451, 460
BssT1I	CCWWGG	3 cut(s)	113, 147, 527
Bst4CI	ACNGT	3 cut(s)	12, 364, 648
BstAPI	GCANNNNNTGC	1 cut(s)	56
BstC8I	GCNNGC	2 cut(s)	555, 567
BstDEI	CTNAG	5 cut(s)	15, 139, 202, 267, 633
BstDSI	CCRYGG	2 cut(s)	113, 147
BstF5I	GGATG	2 cut(s)	618, 787
BstFNI	CGCG	1 cut(s)	459
BstKTI	GATC	2 cut(s)	454, 463
BstMAI	GTCTC	4 cut(s)	18, 205, 344, 502
BstMBI	GATC	2 cut(s)	451, 460
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 187, 283, 575
BstUI	CGCG	1 cut(s)	459
BstV1I	GCAGC	4 cut(s)	43, 193, 505, 565
BstV2I	GAAGAC	2 cut(s)	264, 725
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
Bsu36I	CCTNAGG	1 cut(s)	633
BsuRI	GGCC	1 cut(s)	152
BtgI	CCRYGG	2 cut(s)	113, 147
BtsCI	GGATG	2 cut(s)	618, 787
BtsI	GCAGTG	1 cut(s)	71
BtsIMutI	CAGTG	1 cut(s)	71
BtuMI	TCGCGA	1 cut(s)	459
Cac8I	GCNNGC	2 cut(s)	555, 567
Csp6I	GTAC	3 cut(s)	406, 417, 676
CviAII	CATG	3 cut(s)	114, 148, 730
CviQI	GTAC	3 cut(s)	406, 417, 676
DdeI	CTNAG	5 cut(s)	15, 139, 202, 267, 633
DpnI	GATC	2 cut(s)	453, 462
DpnII	GATC	2 cut(s)	451, 460
DraIII	CACNNNGTG	1 cut(s)	293
Eco130I	CCWWGG	3 cut(s)	113, 147, 527
Eco57I	CTGAAG	1 cut(s)	707
Eco81I	CCTNAGG	1 cut(s)	633
Eco88I	CYCGRG	2 cut(s)	465, 743
EcoT14I	CCWWGG	3 cut(s)	113, 147, 527
ErhI	CCWWGG	3 cut(s)	113, 147, 527
FaeI	CATG	3 cut(s)	117, 151, 733
FalI	AAGNNNNNCTT	2 cut(s)	393, 425
FatI	CATG	3 cut(s)	113, 147, 729
Fnu4HI	GCNGC	4 cut(s)	57, 182, 519, 579
FokI	GGATG	2 cut(s)	625, 774
Fsp4HI	GCNGC	4 cut(s)	57, 182, 519, 579
FspBI	CTAG	5 cut(s)	566, 641, 711, 723, 735
GluI	GCNGC	4 cut(s)	57, 182, 519, 579
GsuI	CTGGAG	1 cut(s)	112
HaeIII	GGCC	1 cut(s)	152
HapII	CCGG	1 cut(s)	558
Hin1II	CATG	3 cut(s)	117, 151, 733
HinfI	GANTC	2 cut(s)	109, 143
HpaII	CCGG	1 cut(s)	558
Hpy166II	GTNNAC	1 cut(s)	676
Hpy188I	TCNGA	5 cut(s)	18, 142, 478, 600, 792
Hpy188III	TCNNGA	6 cut(s)	129, 341, 458, 467, 485, 632
Hpy8I	GTNNAC	1 cut(s)	676
HpyAV	CCTTC	4 cut(s)	220, 228, 290, 393
HpyCH4III	ACNGT	3 cut(s)	12, 364, 648
HpyCH4V	TGCA	3 cut(s)	50, 59, 658
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 187, 283, 575
HpyF3I	CTNAG	5 cut(s)	15, 139, 202, 267, 633
Hsp92II	CATG	3 cut(s)	117, 151, 733
Kzo9I	GATC	2 cut(s)	451, 460
LmnI	GCTCC	1 cut(s)	81
LpnPI	CCDG	7 cut(s)	142, 207, 354, 498, 549, 571, 645
Lsp1109I	GCAGC	4 cut(s)	43, 193, 505, 565
LweI	GCATC	1 cut(s)	505
MaeI	CTAG	5 cut(s)	566, 641, 711, 723, 735
MaeIII	GTNAC	2 cut(s)	364, 725
MalI	GATC	2 cut(s)	453, 462
MboI	GATC	2 cut(s)	451, 460
MboII	GAAGA	7 cut(s)	55, 81, 84, 266, 269, 461, 730
MfeI	CAATTG	1 cut(s)	420
MflI	RGATCY	1 cut(s)	451
MhlI	GDGCHC	1 cut(s)	543
MluCI	AATT	4 cut(s)	226, 330, 420, 436
MlyI	GAGTC	1 cut(s)	103
MnlI	CCTC	9 cut(s)	136, 163, 245, 249, 288, 465, 474, 603, 628
MseI	TTAA	2 cut(s)	347, 435
MspI	CCGG	1 cut(s)	558
MunI	CAATTG	1 cut(s)	420
Mva1269I	GAATGC	1 cut(s)	744
MvnI	CGCG	1 cut(s)	459
MwoI	GCNNNNNNNGC	4 cut(s)	56, 187, 283, 575
NcoI	CCATGG	2 cut(s)	113, 147
NdeII	GATC	2 cut(s)	451, 460
NheI	GCTAGC	1 cut(s)	565
NlaIII	CATG	3 cut(s)	117, 151, 733
NlaIV	GGNNCC	1 cut(s)	591
NmuCI	GTSAC	1 cut(s)	725
NruI	TCGCGA	1 cut(s)	459
PaeR7I	CTCGAG	1 cut(s)	465
PcsI	WCGNNNNNNNCGW	1 cut(s)	463
PctI	GAATGC	1 cut(s)	744
PfeI	GAWTC	1 cut(s)	143
PkrI	GCNGC	4 cut(s)	58, 183, 520, 580
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
PshBI	ATTAAT	1 cut(s)	435
PspN4I	GGNNCC	1 cut(s)	591
PsuI	RGATCY	1 cut(s)	451
RruI	TCGCGA	1 cut(s)	459
RsaI	GTAC	3 cut(s)	407, 418, 677
RsaNI	GTAC	3 cut(s)	406, 417, 676
SaqAI	TTAA	2 cut(s)	347, 435
SatI	GCNGC	4 cut(s)	57, 182, 519, 579
Sau3AI	GATC	2 cut(s)	451, 460
SchI	GAGTC	1 cut(s)	103
SduI	GDGCHC	1 cut(s)	543
SetI	ASST	9 cut(s)	38, 101, 237, 273, 411, 474, 567, 571, 768
SfaNI	GCATC	1 cut(s)	505
Sfr274I	CTCGAG	1 cut(s)	465
SlaI	CTCGAG	1 cut(s)	465
SmlI	CTYRAG	3 cut(s)	100, 410, 465
SmoI	CTYRAG	3 cut(s)	100, 410, 465
SpeI	ACTAGT	1 cut(s)	722
Sse9I	AATT	4 cut(s)	226, 330, 420, 436
SspMI	CTAG	5 cut(s)	566, 641, 711, 723, 735
StyI	CCWWGG	3 cut(s)	113, 147, 527
TaaI	ACNGT	3 cut(s)	12, 364, 648
TaqI	TCGA	2 cut(s)	342, 466
TasI	AATT	4 cut(s)	226, 330, 420, 436
TatI	WGTACW	1 cut(s)	675
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	2 cut(s)	347, 435
Tru9I	TTAA	2 cut(s)	347, 435
TscAI	CASTG	1 cut(s)	78
TseFI	GTSAC	1 cut(s)	725
TseI	GCWGC	4 cut(s)	56, 181, 518, 578
Tsp45I	GTSAC	1 cut(s)	725
TspDTI	ATGAA	5 cut(s)	20, 267, 347, 375, 617
TspRI	CASTG	1 cut(s)	78
VspI	ATTAAT	1 cut(s)	435
XapI	RAATTY	1 cut(s)	226
XhoI	CTCGAG	1 cut(s)	465
XspI	CTAG	5 cut(s)	566, 641, 711, 723, 735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.