Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004337

Physical Location & Seq

Genomic Coordinates Reverse (-)

37887100 .. 37888020

Gene Structure 921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G448600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAGCAGCGATCAAACCCAAGGTTCAGAGACTGAGAGCAGCTCCAATTCCTTCACCTCCACAACACCACCTTCCTCGCCTTCCTCACTCCAAAACCCACTCTCAGCAAATCTCCAAAAACCCAACTCCCCAATCCATCAAGAAATCGAATTGCCCGGCAAGAAAAACACCAAACGGGGCAGAGACTCCAGCAAGCACCCGGTTTATCGGGGGGTCCGAATGAGAAATTGGGGCAAATGGGTATCCGAAATCCGCGAGCCCCGGAAAAAATCGCGCATTTGGCTGGGCACCTTCCCGACGCCGGAAATGGCAGCCCGAGCCCACGACGTGGCCGCGTTGAGCATCAAAGGCAACTCAGCGATTCTCAACTTCCCTGAACTCTCCGACTCGCTGCCTCGCCCGGTTTCACTCGCTCCCCGCGACGTCCAAGCCGCGGCCTCCAAAGCCGCGCAAATGCACCAATTCGACGCCAACCCATCAATGTCGTGTTCCATGCTGTCCTCGTCCTCGTCTTCTTCGCTGTCGTCGCTCGTCTCTGCCATAGACAACCTGTCGACCGAGTCGGAGGAGCTGAGCGAGATCGTTGAGTTGCCGAGTCTGGGTTACGAGTCGACCGAGTTGAGAAGCGAGTTCGTGTTTGTAGACTCGGAGGACCAATGGGTTTACCCCCCTCCATGGCTGCAGCGCTTGGGGGATTGCGGCGGCGGGTATGTTTGCGATGAGTTGGGGACGCCGAGTTCAAGTGGGTTTGAGGGTTGGGAATATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

257

Amino Acids

27.96

Weight (kDa)

5.11

Isoelectric Point (pI)

68.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11590 AT5G25810
fragaria_vesca	FvH4_1g05820 FvH4_2g35620
malus_domestica	MD02G1060200.v1.1 MD08G1114100.v1.1 MD15G1093800.v1.1 MD15G1193700.v1.1
prunus_persica	Prupe.1G448600_v2.0.a1 Prupe.7G222700_v2.0.a1
pyrus_communis	pycom02g04920 pycom08g09510 pycom15g17340
rosa_chinensis	RchiOBHm_Chr2g0091471 RchiOBHm_Chr6g0306191
rosa_laevigata	RLG00000010815 RLG00000016227
rosa_multiflora	Rmu_sc0002407.1_g000015 Rmu_sc0003594.1_g000007
rosa_roxburghii	Rroxscaffold_2G00150040 Rroxscaffold_7G00161970
rosa_rugosa	Rorug02G0018200 Rorug06G0347800
rosa_samantha	Rh2BG062600 Rh2CG064300 Rh2DG062700 Rh6AG460400 Rh6BG441000 Rh6CG474400 Rh6DG460700
rosa_wichuraiana	Rw2G005700 Rw6G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	426
AccB1I	GGYRCC	1 cut(s)	287
AccB7I	CCANNNNNTGG	1 cut(s)	328
AccI	GTMKAC	3 cut(s)	554, 611, 642
AccII	CGCG	6 cut(s)	255, 274, 335, 420, 434, 449
AciI	CCGC	9 cut(s)	253, 333, 418, 432, 434, 447, 699, 702, 705
AcoI	YGGCCR	1 cut(s)	330
AcyI	GRCGYC	4 cut(s)	299, 423, 468, 731
AdeI	CACNNNGTG	1 cut(s)	328
AfeI	AGCGCT	1 cut(s)	686
AfiI	CCNNNNNNNGG	5 cut(s)	301, 328, 433, 599, 675
AgsI	TTSAA	1 cut(s)	741
AhdI	GACNNNNNGTC	1 cut(s)	550
AjiI	CACGTC	1 cut(s)	328
AjuI	GAANNNNNNNTTGG	2 cut(s)	211, 243
AloI	GAACNNNNNNTCC	2 cut(s)	721, 753
AluBI	AGCT	2 cut(s)	42, 571
AluI	AGCT	2 cut(s)	42, 571
Alw26I	GTCTC	3 cut(s)	23, 177, 538
AlwNI	CAGNNNCTG	1 cut(s)	32
Ama87I	CYCGRG	1 cut(s)	315
Aor51HI	AGCGCT	1 cut(s)	686
AoxI	GGCC	2 cut(s)	330, 435
ApeKI	GCWGC	6 cut(s)	6, 39, 311, 391, 679, 682
AspLEI	GCGC	3 cut(s)	276, 451, 687
AspS9I	GGNCC	2 cut(s)	214, 652
AsuC2I	CCSGG	4 cut(s)	156, 200, 262, 401
AsuHPI	GGTGA	1 cut(s)	46
AvaI	CYCGRG	1 cut(s)	315
AvaII	GGWCC	2 cut(s)	214, 652
BaeGI	GKGCMC	1 cut(s)	290
BanI	GGYRCC	1 cut(s)	287
BanII	GRGCYC	2 cut(s)	261, 322
BbsI	GAAGAC	1 cut(s)	504
BbvI	GCAGC	6 cut(s)	18, 51, 323, 378, 666, 694
BccI	CCATC	2 cut(s)	144, 484
BciVI	GTATCC	1 cut(s)	253
BcnI	CCSGG	4 cut(s)	156, 200, 262, 401
BcoDI	GTCTC	3 cut(s)	23, 177, 538
BfmI	CTRYAG	1 cut(s)	680
BfoI	RGCGCY	1 cut(s)	688
BfuI	GTATCC	1 cut(s)	253
BlpI	GCTNAGC	1 cut(s)	572
Bme1390I	CCNGG	4 cut(s)	156, 200, 262, 401
Bme18I	GGWCC	2 cut(s)	214, 652
BmeRI	GACNNNNNGTC	1 cut(s)	550
BmeT110I	CYCGRG	1 cut(s)	315
BmgBI	CACGTC	1 cut(s)	328
BmgT120I	GGNCC	2 cut(s)	214, 652
BmiI	GGNNCC	2 cut(s)	215, 289
BmrFI	CCNGG	4 cut(s)	156, 200, 262, 401
BmsI	GCATC	1 cut(s)	351
BpiI	GAAGAC	1 cut(s)	504
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
BpmI	CTGGAG	1 cut(s)	172
Bpu1102I	GCTNAGC	1 cut(s)	572
BpuMI	CCSGG	4 cut(s)	156, 200, 262, 401
BsaHI	GRCGYC	4 cut(s)	299, 423, 468, 731
BsaJI	CCNNGG	4 cut(s)	19, 260, 432, 674
Bsc4I	CCNNNNNNNGG	5 cut(s)	301, 328, 433, 599, 675
BseDI	CCNNGG	4 cut(s)	19, 260, 432, 674
BseLI	CCNNNNNNNGG	5 cut(s)	301, 328, 433, 599, 675
BseMII	CTCAG	4 cut(s)	24, 117, 369, 563
BseRI	GAGGAG	1 cut(s)	581
BseSI	GKGCMC	1 cut(s)	290
BseXI	GCAGC	6 cut(s)	18, 51, 323, 378, 666, 694
BseYI	CCCAGC	1 cut(s)	283
Bsh1236I	CGCG	6 cut(s)	255, 274, 335, 420, 434, 449
Bsh1285I	CGRYCG	2 cut(s)	558, 615
BshFI	GGCC	2 cut(s)	332, 437
BshNI	GGYRCC	1 cut(s)	287
BsiEI	CGRYCG	2 cut(s)	558, 615
BsiHKCI	CYCGRG	1 cut(s)	315
BsiSI	CCGG	5 cut(s)	156, 200, 262, 302, 401
BslFI	GGGAC	1 cut(s)	742
BslI	CCNNNNNNNGG	5 cut(s)	301, 328, 433, 599, 675
BsmAI	GTCTC	3 cut(s)	23, 177, 538
BsmBI	CGTCTC	1 cut(s)	538
BsmFI	GGGAC	1 cut(s)	742
BsnI	GGCC	2 cut(s)	332, 437
BsoBI	CYCGRG	1 cut(s)	315
Bsp1286I	GDGCHC	3 cut(s)	261, 290, 322
Bsp143I	GATC	2 cut(s)	10, 579
Bsp1720I	GCTNAGC	1 cut(s)	572
Bsp19I	CCATGG	1 cut(s)	674
BspACI	CCGC	9 cut(s)	253, 333, 418, 432, 434, 447, 699, 702, 705
BspANI	GGCC	2 cut(s)	332, 437
BspCNI	CTCAG	4 cut(s)	25, 116, 368, 564
BspFNI	CGCG	6 cut(s)	255, 274, 335, 420, 434, 449
BspLI	GGNNCC	2 cut(s)	215, 289
BspMAI	CTGCAG	1 cut(s)	684
BspT107I	GGYRCC	1 cut(s)	287
BssECI	CCNNGG	4 cut(s)	19, 260, 432, 674
BssMI	GATC	2 cut(s)	10, 579
BssNI	GRCGYC	4 cut(s)	299, 423, 468, 731
BssT1I	CCWWGG	2 cut(s)	19, 674
BstACI	GRCGYC	4 cut(s)	299, 423, 468, 731
BstC8I	GCNNGC	2 cut(s)	194, 257
BstDEI	CTNAG	4 cut(s)	33, 103, 355, 572
BstDSI	CCRYGG	2 cut(s)	432, 674
BstFNI	CGCG	6 cut(s)	255, 274, 335, 420, 434, 449
BstH2I	RGCGCY	1 cut(s)	688
BstHHI	GCGC	3 cut(s)	276, 451, 687
BstKTI	GATC	2 cut(s)	13, 582
BstMAI	GTCTC	3 cut(s)	23, 177, 538
BstMBI	GATC	2 cut(s)	10, 579
BstMCI	CGRYCG	2 cut(s)	558, 615
BstMWI	GCNNNNNNNGC	5 cut(s)	280, 317, 348, 443, 526
BstSCI	CCNGG	4 cut(s)	154, 198, 260, 399
BstSFI	CTRYAG	1 cut(s)	680
BstSLI	GKGCMC	1 cut(s)	290
BstUI	CGCG	6 cut(s)	255, 274, 335, 420, 434, 449
BstV1I	GCAGC	6 cut(s)	18, 51, 323, 378, 666, 694
BstV2I	GAAGAC	1 cut(s)	504
BsuI	GTATCC	1 cut(s)	253
BsuRI	GGCC	2 cut(s)	332, 437
BtgI	CCRYGG	2 cut(s)	432, 674
BtgZI	GCGATG	1 cut(s)	732
BtrI	CACGTC	1 cut(s)	328
Cac8I	GCNNGC	2 cut(s)	194, 257
CaiI	CAGNNNCTG	1 cut(s)	32
CfoI	GCGC	3 cut(s)	276, 451, 687
Cfr13I	GGNCC	2 cut(s)	214, 652
Cfr42I	CCGCGG	1 cut(s)	435
CseI	GACGC	3 cut(s)	307, 476, 739
CviAII	CATG	2 cut(s)	493, 675
DdeI	CTNAG	4 cut(s)	33, 103, 355, 572
DpnI	GATC	2 cut(s)	12, 581
DpnII	GATC	2 cut(s)	10, 579
DraIII	CACNNNGTG	1 cut(s)	328
DriI	GACNNNNNGTC	1 cut(s)	550
EaeI	YGGCCR	1 cut(s)	330
Eam1105I	GACNNNNNGTC	1 cut(s)	550
Eco130I	CCWWGG	2 cut(s)	19, 674
Eco24I	GRGCYC	2 cut(s)	261, 322
Eco47I	GGWCC	2 cut(s)	214, 652
Eco47III	AGCGCT	1 cut(s)	686
Eco88I	CYCGRG	1 cut(s)	315
EcoT14I	CCWWGG	2 cut(s)	19, 674
EcoT38I	GRGCYC	2 cut(s)	261, 322
ErhI	CCWWGG	2 cut(s)	19, 674
Esp3I	CGTCTC	1 cut(s)	538
FaeI	CATG	2 cut(s)	496, 678
FaiI	YATR	5 cut(s)	494, 542, 676, 711, 765
FaqI	GGGAC	1 cut(s)	742
FatI	CATG	2 cut(s)	492, 674
FauI	CCCGC	2 cut(s)	425, 698
FblI	GTMKAC	3 cut(s)	554, 611, 642
FriOI	GRGCYC	2 cut(s)	261, 322
GlaI	GCGC	3 cut(s)	275, 450, 686
GsaI	CCCAGC	1 cut(s)	287
GsuI	CTGGAG	1 cut(s)	172
HaeII	RGCGCY	1 cut(s)	688
HaeIII	GGCC	2 cut(s)	332, 437
HapII	CCGG	5 cut(s)	156, 200, 262, 302, 401
HgaI	GACGC	3 cut(s)	307, 476, 739
HhaI	GCGC	3 cut(s)	276, 451, 687
Hin1I	GRCGYC	4 cut(s)	299, 423, 468, 731
Hin1II	CATG	2 cut(s)	496, 678
Hin6I	GCGC	3 cut(s)	274, 449, 685
HinP1I	GCGC	3 cut(s)	274, 449, 685
HincII	GTYRAC	2 cut(s)	555, 612
HindII	GTYRAC	2 cut(s)	555, 612
HinfI	GANTC	7 cut(s)	185, 361, 386, 560, 595, 608, 644
HpaII	CCGG	5 cut(s)	156, 200, 262, 302, 401
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	4 cut(s)	555, 612, 643, 664
Hpy188I	TCNGA	6 cut(s)	28, 218, 247, 385, 565, 649
Hpy188III	TCNNGA	2 cut(s)	140, 295
Hpy8I	GTNNAC	4 cut(s)	555, 612, 643, 664
Hpy99I	CGWCG	5 cut(s)	301, 329, 425, 470, 529
HpyAV	CCTTC	4 cut(s)	61, 81, 90, 301
HpyCH4IV	ACGT	2 cut(s)	327, 423
HpyCH4V	TGCA	2 cut(s)	457, 682
HpyF10VI	GCNNNNNNNGC	5 cut(s)	280, 317, 348, 443, 526
HpyF3I	CTNAG	4 cut(s)	33, 103, 355, 572
HpySE526I	ACGT	2 cut(s)	327, 423
Hsp92I	GRCGYC	4 cut(s)	299, 423, 468, 731
Hsp92II	CATG	2 cut(s)	496, 678
HspAI	GCGC	3 cut(s)	274, 449, 685
KspI	CCGCGG	1 cut(s)	435
Kzo9I	GATC	2 cut(s)	10, 579
LmnI	GCTCC	3 cut(s)	47, 418, 568
Lsp1109I	GCAGC	6 cut(s)	18, 51, 323, 378, 666, 694
LweI	GCATC	1 cut(s)	351
MaeII	ACGT	2 cut(s)	327, 423
MaeIII	GTNAC	1 cut(s)	602
MalI	GATC	2 cut(s)	12, 581
MboI	GATC	2 cut(s)	10, 579
MboII	GAAGA	2 cut(s)	504, 507
MhlI	GDGCHC	3 cut(s)	261, 290, 322
MluCI	AATT	5 cut(s)	46, 149, 226, 461, 766
MlyI	GAGTC	6 cut(s)	179, 380, 569, 604, 617, 638
MmeI	TCCRAC	2 cut(s)	408, 543
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	5 cut(s)	156, 200, 262, 302, 401
MspR9I	CCNGG	4 cut(s)	156, 200, 262, 401
MvnI	CGCG	6 cut(s)	255, 274, 335, 420, 434, 449
MwoI	GCNNNNNNNGC	5 cut(s)	280, 317, 348, 443, 526
NciI	CCSGG	4 cut(s)	156, 200, 262, 401
NcoI	CCATGG	1 cut(s)	674
NdeII	GATC	2 cut(s)	10, 579
NlaIII	CATG	2 cut(s)	496, 678
NlaIV	GGNNCC	2 cut(s)	215, 289
NmeAIII	GCCGAG	2 cut(s)	618, 759
PcsI	WCGNNNNNNNCGW	3 cut(s)	214, 417, 612
PfeI	GAWTC	1 cut(s)	361
PflFI	GACNNNGTC	1 cut(s)	559
PflMI	CCANNNNNTGG	1 cut(s)	328
PleI	GAGTC	6 cut(s)	179, 380, 568, 603, 616, 638
PpsI	GAGTC	6 cut(s)	179, 380, 568, 603, 616, 638
PspFI	CCCAGC	1 cut(s)	283
PspN4I	GGNNCC	2 cut(s)	215, 289
PspPI	GGNCC	2 cut(s)	214, 652
PstI	CTGCAG	1 cut(s)	684
PstNI	CAGNNNCTG	1 cut(s)	32
PsyI	GACNNNGTC	1 cut(s)	559
SacII	CCGCGG	1 cut(s)	435
SalI	GTCGAC	2 cut(s)	553, 610
Sau3AI	GATC	2 cut(s)	10, 579
Sau96I	GGNCC	2 cut(s)	214, 652
SchI	GAGTC	6 cut(s)	179, 380, 569, 604, 617, 638
ScrFI	CCNGG	4 cut(s)	156, 200, 262, 401
SduI	GDGCHC	3 cut(s)	261, 290, 322
SetI	ASST	9 cut(s)	25, 44, 59, 73, 293, 330, 426, 552, 573
SfaNI	GCATC	1 cut(s)	351
SfcI	CTRYAG	1 cut(s)	680
Sfr303I	CCGCGG	1 cut(s)	435
SgrBI	CCGCGG	1 cut(s)	435
SinI	GGWCC	2 cut(s)	214, 652
Sse9I	AATT	5 cut(s)	46, 149, 226, 461, 766
SsiI	CCGC	9 cut(s)	253, 333, 418, 432, 434, 447, 699, 702, 705
StyD4I	CCNGG	4 cut(s)	154, 198, 260, 399
StyI	CCWWGG	2 cut(s)	19, 674
TaiI	ACGT	2 cut(s)	330, 426
TaqI	TCGA	4 cut(s)	147, 465, 554, 611
TaqII	GACCGA	2 cut(s)	572, 629
TasI	AATT	5 cut(s)	46, 149, 226, 461, 766
TauI	GCSGC	6 cut(s)	335, 434, 437, 449, 702, 705
TfiI	GAWTC	1 cut(s)	361
TseI	GCWGC	6 cut(s)	6, 39, 311, 391, 679, 682
Tth111I	GACNNNGTC	1 cut(s)	559
Van91I	CCANNNNNTGG	1 cut(s)	328
VpaK11BI	GGWCC	2 cut(s)	214, 652
XmiI	GTMKAC	3 cut(s)	554, 611, 642
ZraI	GACGTC	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.