Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004337

Physical Location & Seq

Genomic Coordinates Reverse (-)

26279523 .. 26280287

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g35620.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAGTTGTACTACTGAAACCCAGTTGGGTTCGGAAACTGATAGCAGCTCAACTTCCTCATCACCACCGTCTTCCCCTGCAAGTTCCAGACCCTTGAACCCCGATAACAAGCCGGAGTCACTAGAATTGCAACCCAAAAACAACAACGACAAGAAGAGCAAACGAGCCAGAGTCGACTCCAGCAAGCACCCGGTTTACCGCGGCGTCCGGATGCGCAACTGGGGCAAATGGGTCTCGGAAATCCGCGAGCCACGCAAGAAGTCACGCATTTGGCTCGGGACCTTCCCCACCCCTGAAATGGCCGCCAGAGCTCATGACGTGGCCGCGTTGAGCATCAAAGGCAATTCAGCAATTCTCAACTTCCCTGAACTCATTGACTCGCTGCCGCGGCCGGCCTCCCTCGCTCCCCGAGACGTCCAGGCCGCGGCGTCCAAGGCTGCCCAAATGCACCAGTTCGACTCGACCAACCCTTCATTGTCCAGCACGTCATCGTCGTCCTCGTTGAGTTCTCTGGTCTCGGCTATAGACAACCTCTCGACCGAGTCGGAGGAGCTGAGCGAGATAGTTGAGCTGCCGAGTCTGGGGACGAGTTACGAGTCGTACGAGTTGAGAAGTGAGTTTGTGTTCGTGGACTCGGCCGATGACGAGTGGGTGTACCCGCCGCCGTGGCTACAGCAAATGGGGGACTGCGGCGTCTACGTGTGCGGTGGGCTAGGAAGTTCTGCTAACTCGACTGGCTTTGAGGGTTTGTTATGGGATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

255

Amino Acids

27.65

Weight (kDa)

5.01

Isoelectric Point (pI)

62.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	64 - 114	1.9e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11590 AT5G25810
fragaria_vesca	FvH4_1g05820 FvH4_2g35620
malus_domestica	MD02G1060200.v1.1 MD08G1114100.v1.1 MD15G1093800.v1.1 MD15G1193700.v1.1
prunus_persica	Prupe.1G448600_v2.0.a1 Prupe.7G222700_v2.0.a1
pyrus_communis	pycom02g04920 pycom08g09510 pycom15g17340
rosa_chinensis	RchiOBHm_Chr2g0091471 RchiOBHm_Chr6g0306191
rosa_laevigata	RLG00000010815 RLG00000016227
rosa_multiflora	Rmu_sc0002407.1_g000015 Rmu_sc0003594.1_g000007
rosa_roxburghii	Rroxscaffold_2G00150040 Rroxscaffold_7G00161970
rosa_rugosa	Rorug02G0018200 Rorug06G0347800
rosa_samantha	Rh2BG062600 Rh2CG064300 Rh2DG062700 Rh6AG460400 Rh6BG441000 Rh6CG474400 Rh6DG460700
rosa_wichuraiana	Rw2G005700 Rw6G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	692
AatII	GACGTC	1 cut(s)	417
Acc16I	TGCGCA	1 cut(s)	215
AccI	GTMKAC	2 cut(s)	174, 696
AccII	CGCG	5 cut(s)	201, 246, 326, 388, 425
AccIII	TCCGGA	1 cut(s)	207
AcoI	YGGCCR	4 cut(s)	300, 321, 389, 636
AcyI	GRCGYC	4 cut(s)	204, 414, 428, 693
AfaI	GTAC	3 cut(s)	10, 602, 656
AfiI	CCNNNNNNNGG	3 cut(s)	298, 424, 581
AflIII	ACRYGT	1 cut(s)	699
AgsI	TTSAA	1 cut(s)	97
AjiI	CACGTC	2 cut(s)	319, 486
AjnI	CCWGG	1 cut(s)	417
AluBI	AGCT	4 cut(s)	48, 311, 553, 571
AluI	AGCT	4 cut(s)	48, 311, 553, 571
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	3 cut(s)	238, 405, 520
Ama87I	CYCGRG	2 cut(s)	275, 408
Aor13HI	TCCGGA	1 cut(s)	207
AoxI	GGCC	6 cut(s)	300, 321, 389, 393, 420, 636
ApeKI	GCWGC	4 cut(s)	45, 382, 437, 571
AspLEI	GCGC	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	279
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	1 cut(s)	54
AvaI	CYCGRG	2 cut(s)	275, 408
AvaII	GGWCC	1 cut(s)	279
BanII	GRGCYC	1 cut(s)	313
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	4 cut(s)	57, 369, 424, 558
BceAI	ACGGC	1 cut(s)	649
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BciT130I	CCWGG	1 cut(s)	419
BcnI	CCSGG	1 cut(s)	191
BcoDI	GTCTC	3 cut(s)	238, 405, 520
BfaI	CTAG	2 cut(s)	122, 713
BfmI	CTRYAG	2 cut(s)	522, 671
BglI	GCCNNNNNGGC	1 cut(s)	667
BlpI	GCTNAGC	1 cut(s)	554
Bme1390I	CCNGG	2 cut(s)	191, 419
Bme18I	GGWCC	1 cut(s)	279
BmeT110I	CYCGRG	2 cut(s)	275, 408
BmgBI	CACGTC	2 cut(s)	319, 486
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	1 cut(s)	280
BmrFI	CCNGG	2 cut(s)	191, 419
BmrI	ACTGGG	2 cut(s)	16, 229
BmsI	GCATC	2 cut(s)	201, 342
BmuI	ACTGGG	2 cut(s)	16, 229
BpiI	GAAGAC	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	163
Bpu1102I	GCTNAGC	1 cut(s)	554
BpuMI	CCSGG	1 cut(s)	191
BsaAI	YACGTR	1 cut(s)	700
BsaHI	GRCGYC	4 cut(s)	204, 414, 428, 693
BsaI	GGTCTC	2 cut(s)	238, 520
BsaJI	CCNNGG	5 cut(s)	199, 386, 423, 432, 665
BsaWI	WCCGGW	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	3 cut(s)	298, 424, 581
Bse118I	RCCGGY	1 cut(s)	391
Bse1I	ACTGG	4 cut(s)	22, 224, 451, 739
BseAI	TCCGGA	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	419
BseDI	CCNNGG	5 cut(s)	199, 386, 423, 432, 665
BseGI	GGATG	1 cut(s)	216
BseLI	CCNNNNNNNGG	3 cut(s)	298, 424, 581
BseMII	CTCAG	1 cut(s)	545
BseNI	ACTGG	4 cut(s)	22, 224, 451, 739
BseRI	GAGGAG	1 cut(s)	563
BseX3I	CGGCCG	2 cut(s)	389, 636
BseXI	GCAGC	4 cut(s)	57, 369, 424, 558
Bsh1236I	CGCG	5 cut(s)	201, 246, 326, 388, 425
Bsh1285I	CGRYCG	3 cut(s)	392, 540, 639
BshFI	GGCC	6 cut(s)	302, 323, 391, 395, 422, 638
BsiEI	CGRYCG	3 cut(s)	392, 540, 639
BsiHKAI	GWGCWC	1 cut(s)	313
BsiHKCI	CYCGRG	2 cut(s)	275, 408
BsiSI	CCGG	4 cut(s)	113, 191, 208, 392
BsiWI	CGTACG	1 cut(s)	600
BslFI	GGGAC	3 cut(s)	292, 598, 698
BslI	CCNNNNNNNGG	3 cut(s)	298, 424, 581
BsmAI	GTCTC	3 cut(s)	238, 405, 520
BsmBI	CGTCTC	1 cut(s)	405
BsmFI	GGGAC	3 cut(s)	292, 598, 698
BsnI	GGCC	6 cut(s)	302, 323, 391, 395, 422, 638
Bso31I	GGTCTC	2 cut(s)	238, 520
BsoBI	CYCGRG	2 cut(s)	275, 408
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp13I	TCCGGA	1 cut(s)	207
Bsp1720I	GCTNAGC	1 cut(s)	554
BspANI	GGCC	6 cut(s)	302, 323, 391, 395, 422, 638
BspCNI	CTCAG	1 cut(s)	546
BspEI	TCCGGA	1 cut(s)	207
BspFNI	CGCG	5 cut(s)	201, 246, 326, 388, 425
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	280
BspQI	GCTCTTC	1 cut(s)	149
BspTNI	GGTCTC	2 cut(s)	238, 520
BsrFI	RCCGGY	1 cut(s)	391
BsrI	ACTGG	4 cut(s)	22, 224, 451, 739
BssAI	RCCGGY	1 cut(s)	391
BssECI	CCNNGG	5 cut(s)	199, 386, 423, 432, 665
BssNI	GRCGYC	4 cut(s)	204, 414, 428, 693
BssT1I	CCWWGG	1 cut(s)	432
Bst2UI	CCWGG	1 cut(s)	419
Bst4CI	ACNGT	1 cut(s)	69
Bst6I	CTCTTC	1 cut(s)	149
BstACI	GRCGYC	4 cut(s)	204, 414, 428, 693
BstBAI	YACGTR	1 cut(s)	700
BstC8I	GCNNGC	3 cut(s)	185, 248, 393
BstDEI	CTNAG	1 cut(s)	554
BstDSI	CCRYGG	4 cut(s)	199, 386, 423, 665
BstF5I	GGATG	1 cut(s)	216
BstFNI	CGCG	5 cut(s)	201, 246, 326, 388, 425
BstHHI	GCGC	1 cut(s)	216
BstMAI	GTCTC	3 cut(s)	238, 405, 520
BstMCI	CGRYCG	3 cut(s)	392, 540, 639
BstMWI	GCNNNNNNNGC	8 cut(s)	222, 252, 308, 339, 388, 401, 434, 667
BstNI	CCWGG	1 cut(s)	419
BstSCI	CCNGG	2 cut(s)	189, 417
BstSFI	CTRYAG	2 cut(s)	522, 671
BstUI	CGCG	5 cut(s)	201, 246, 326, 388, 425
BstV1I	GCAGC	4 cut(s)	57, 369, 424, 558
BstV2I	GAAGAC	1 cut(s)	63
BstZI	CGGCCG	2 cut(s)	389, 636
BsuRI	GGCC	6 cut(s)	302, 323, 391, 395, 422, 638
BtgI	CCRYGG	4 cut(s)	199, 386, 423, 665
BtrI	CACGTC	2 cut(s)	319, 486
BtsCI	GGATG	1 cut(s)	216
Cac8I	GCNNGC	3 cut(s)	185, 248, 393
CciI	TCATGA	1 cut(s)	313
CfoI	GCGC	1 cut(s)	216
Cfr10I	RCCGGY	1 cut(s)	391
Cfr13I	GGNCC	1 cut(s)	279
Cfr42I	CCGCGG	3 cut(s)	202, 389, 426
CseI	GACGC	3 cut(s)	193, 417, 682
Csp6I	GTAC	3 cut(s)	9, 601, 655
CviAII	CATG	1 cut(s)	314
CviQI	GTAC	3 cut(s)	9, 601, 655
DdeI	CTNAG	1 cut(s)	554
DrdI	GACNNNNNNGTC	1 cut(s)	692
DseDI	GACNNNNNNGTC	1 cut(s)	692
EaeI	YGGCCR	4 cut(s)	300, 321, 389, 636
EagI	CGGCCG	2 cut(s)	389, 636
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Ecl136II	GAGCTC	1 cut(s)	311
EclXI	CGGCCG	2 cut(s)	389, 636
Eco130I	CCWWGG	1 cut(s)	432
Eco24I	GRGCYC	1 cut(s)	313
Eco31I	GGTCTC	2 cut(s)	238, 520
Eco47I	GGWCC	1 cut(s)	279
Eco52I	CGGCCG	2 cut(s)	389, 636
Eco53kI	GAGCTC	1 cut(s)	311
Eco88I	CYCGRG	2 cut(s)	275, 408
EcoICRI	GAGCTC	1 cut(s)	311
EcoO109I	RGGNCCY	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	417
EcoT14I	CCWWGG	1 cut(s)	432
EcoT38I	GRGCYC	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	432
Esp3I	CGTCTC	1 cut(s)	405
FaeI	CATG	1 cut(s)	317
FaiI	YATR	3 cut(s)	315, 524, 754
FaqI	GGGAC	3 cut(s)	292, 598, 698
FatI	CATG	1 cut(s)	313
FauI	CCCGC	1 cut(s)	666
FblI	GTMKAC	2 cut(s)	174, 696
FokI	GGATG	1 cut(s)	223
FriOI	GRGCYC	1 cut(s)	313
FseI	GGCCGGCC	1 cut(s)	395
FspBI	CTAG	2 cut(s)	122, 713
FspI	TGCGCA	1 cut(s)	215
GlaI	GCGC	1 cut(s)	215
GsuI	CTGGAG	1 cut(s)	163
HaeIII	GGCC	6 cut(s)	302, 323, 391, 395, 422, 638
HapII	CCGG	4 cut(s)	113, 191, 208, 392
HgaI	GACGC	3 cut(s)	193, 417, 682
HhaI	GCGC	1 cut(s)	216
Hin1I	GRCGYC	4 cut(s)	204, 414, 428, 693
Hin1II	CATG	1 cut(s)	317
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	9 cut(s)	116, 171, 176, 377, 458, 542, 577, 596, 632
HpaII	CCGG	4 cut(s)	113, 191, 208, 392
HphI	GGTGA	1 cut(s)	54
Hpy166II	GTNNAC	5 cut(s)	175, 196, 631, 655, 697
Hpy188I	TCNGA	3 cut(s)	34, 238, 547
Hpy188III	TCNNGA	5 cut(s)	87, 208, 277, 314, 535
Hpy8I	GTNNAC	5 cut(s)	175, 196, 631, 655, 697
Hpy99I	CGWCG	1 cut(s)	496
HpyAV	CCTTC	2 cut(s)	292, 480
HpyCH4III	ACNGT	1 cut(s)	69
HpyCH4IV	ACGT	4 cut(s)	318, 414, 485, 699
HpyCH4V	TGCA	3 cut(s)	80, 130, 448
HpyF10VI	GCNNNNNNNGC	8 cut(s)	222, 252, 308, 339, 388, 401, 434, 667
HpyF3I	CTNAG	1 cut(s)	554
HpySE526I	ACGT	4 cut(s)	318, 414, 485, 699
Hsp92I	GRCGYC	4 cut(s)	204, 414, 428, 693
Hsp92II	CATG	1 cut(s)	317
HspAI	GCGC	1 cut(s)	214
Kpn2I	TCCGGA	1 cut(s)	207
KroI	GCCGGC	1 cut(s)	391
KroNI	GCCGGC	1 cut(s)	393
KspI	CCGCGG	3 cut(s)	202, 389, 426
LguI	GCTCTTC	1 cut(s)	149
LmnI	GCTCC	2 cut(s)	409, 550
Lsp1109I	GCAGC	4 cut(s)	57, 369, 424, 558
LweI	GCATC	2 cut(s)	201, 342
MaeI	CTAG	2 cut(s)	122, 713
MaeII	ACGT	4 cut(s)	318, 414, 485, 699
MaeIII	GTNAC	3 cut(s)	117, 261, 590
MboII	GAAGA	2 cut(s)	63, 166
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	3 cut(s)	125, 343, 351
MlyI	GAGTC	9 cut(s)	125, 170, 180, 371, 452, 551, 586, 605, 626
MmeI	TCCRAC	1 cut(s)	525
MnlI	CCTC	7 cut(s)	67, 406, 410, 508, 541, 542, 736
MroI	TCCGGA	1 cut(s)	207
MroNI	GCCGGC	1 cut(s)	391
MseI	TTAA	1 cut(s)	763
MspA1I	CMGCKG	3 cut(s)	201, 388, 425
MspI	CCGG	4 cut(s)	113, 191, 208, 392
MspR9I	CCNGG	2 cut(s)	191, 419
MvaI	CCWGG	1 cut(s)	419
MvnI	CGCG	5 cut(s)	201, 246, 326, 388, 425
MwoI	GCNNNNNNNGC	8 cut(s)	222, 252, 308, 339, 388, 401, 434, 667
NaeI	GCCGGC	1 cut(s)	393
NciI	CCSGG	1 cut(s)	191
NgoMIV	GCCGGC	1 cut(s)	391
NlaIII	CATG	1 cut(s)	317
NlaIV	GGNNCC	1 cut(s)	280
NmeAIII	GCCGAG	3 cut(s)	497, 600, 614
NmuCI	GTSAC	2 cut(s)	117, 261
NsbI	TGCGCA	1 cut(s)	215
PagI	TCATGA	1 cut(s)	313
PciSI	GCTCTTC	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	3 cut(s)	491, 497, 600
PdiI	GCCGGC	1 cut(s)	393
Pfl23II	CGTACG	1 cut(s)	600
PflFI	GACNNNGTC	1 cut(s)	541
PleI	GAGTC	9 cut(s)	124, 170, 179, 371, 452, 550, 585, 604, 626
PpsI	GAGTC	9 cut(s)	124, 170, 179, 371, 452, 550, 585, 604, 626
Ppu21I	YACGTR	1 cut(s)	700
PpuMI	RGGWCCY	1 cut(s)	279
Psp124BI	GAGCTC	1 cut(s)	313
Psp5II	RGGWCCY	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	417
PspGI	CCWGG	1 cut(s)	417
PspLI	CGTACG	1 cut(s)	600
PspN4I	GGNNCC	1 cut(s)	280
PspPI	GGNCC	1 cut(s)	279
PspPPI	RGGWCCY	1 cut(s)	279
PsyI	GACNNNGTC	1 cut(s)	541
RigI	GGCCGGCC	1 cut(s)	395
RsaI	GTAC	3 cut(s)	10, 602, 656
RsaNI	GTAC	3 cut(s)	9, 601, 655
SacI	GAGCTC	1 cut(s)	313
SacII	CCGCGG	3 cut(s)	202, 389, 426
SalI	GTCGAC	1 cut(s)	173
SapI	GCTCTTC	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	763
Sau96I	GGNCC	1 cut(s)	279
SchI	GAGTC	9 cut(s)	125, 170, 180, 371, 452, 551, 586, 605, 626
ScrFI	CCNGG	2 cut(s)	191, 419
SduI	GDGCHC	1 cut(s)	313
SfaNI	GCATC	2 cut(s)	201, 342
SfcI	CTRYAG	2 cut(s)	522, 671
Sfr303I	CCGCGG	3 cut(s)	202, 389, 426
SgrBI	CCGCGG	3 cut(s)	202, 389, 426
SinI	GGWCC	1 cut(s)	279
Sse9I	AATT	3 cut(s)	125, 343, 351
SspMI	CTAG	2 cut(s)	122, 713
SstI	GAGCTC	1 cut(s)	313
StyD4I	CCNGG	2 cut(s)	189, 417
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	69
TaiI	ACGT	4 cut(s)	321, 417, 488, 702
TaqI	TCGA	5 cut(s)	174, 456, 461, 536, 731
TaqII	GACCGA	1 cut(s)	554
TasI	AATT	3 cut(s)	125, 343, 351
TatI	WGTACW	1 cut(s)	8
TauI	GCSGC	9 cut(s)	204, 305, 326, 388, 391, 425, 428, 664, 693
Tru1I	TTAA	1 cut(s)	763
Tru9I	TTAA	1 cut(s)	763
TseFI	GTSAC	2 cut(s)	117, 261
TseI	GCWGC	4 cut(s)	45, 382, 437, 571
Tsp45I	GTSAC	2 cut(s)	117, 261
TspDTI	ATGAA	1 cut(s)	462
Tth111I	GACNNNGTC	1 cut(s)	541
VpaK11BI	GGWCC	1 cut(s)	279
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295
XmiI	GTMKAC	2 cut(s)	174, 696
XspI	CTAG	2 cut(s)	122, 713
ZraI	GACGTC	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.