Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004337

Physical Location & Seq

Genomic Coordinates Forward (+)

64383374 .. 64385964

Gene Structure 2591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG474400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGAGTAGTACTACTGAAACTCAGTTGGGTTCAGAAACTGATAGCAGCTCATCCTCTTCATCACCACCGTCTTCGCCTGCAAGTTCCGGACCACTAAACCCCAACAAGCCTAGTTCACCGGAATCGGAGACTAAAAACAACAAGAAGATCAAACGGGACAGAGACTCCAGCAAGCACCCGGTTTACCGCGGCGTCCGGATGCGCAACTGGGGCAAATGGGTCTCTGAAATCCGCGAGCCCCGCAAGAAGTCGCGCATTTGGCTCGGGACCTTCCCCACCCCCGAAATGGCCGCCAGAGCTCATGACGTGGCCGCGTTGAGCATCAAAGGCAACTCAGCGATACTCAACTTCCCCGAACTCAGCAACTCGCTGCCGCGGCCGGCCTCGCTCGCTCCCCGAGACGTCCAGGCCGCGGCGTCCAAGGCTGCCCAAATGCACCAGTTCGACTCCAAGCCTTCAATGTCCACCACGTCATCGTCGTCGTCGTTGTGTTCTCTGGTCTCGGCTATAGACAACCTCTCGACCGAGTCAGAGGAGCTGAGCGAGATCGTTCAGTTGCCGAGTCTGGGGACGAGTTACGAGTCGTACGAGTTGAGAAATGAGTTTTTGTTGGTGGACTCGGCCGAGGACGAGTGGGTTTATCCGCCGCCGTGGCTACAGCAAATGGGGGACTGCGGCGTGTATTTGTGCGGTGGGTTAGGAAGTTCTTGTAATTCAACCGGCTTTGAGGGTTTGTTATGGGATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

249

Amino Acids

27.07

Weight (kDa)

5.34

Isoelectric Point (pI)

64.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	60 - 110	1.9e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11590 AT5G25810
fragaria_vesca	FvH4_1g05820 FvH4_2g35620
malus_domestica	MD02G1060200.v1.1 MD08G1114100.v1.1 MD15G1093800.v1.1 MD15G1193700.v1.1
prunus_persica	Prupe.1G448600_v2.0.a1 Prupe.7G222700_v2.0.a1
pyrus_communis	pycom02g04920 pycom08g09510 pycom15g17340
rosa_chinensis	RchiOBHm_Chr2g0091471 RchiOBHm_Chr6g0306191
rosa_laevigata	RLG00000010815 RLG00000016227
rosa_multiflora	Rmu_sc0002407.1_g000015 Rmu_sc0003594.1_g000007
rosa_roxburghii	Rroxscaffold_2G00150040 Rroxscaffold_7G00161970
rosa_rugosa	Rorug02G0018200 Rorug06G0347800
rosa_samantha	Rh2BG062600 Rh2CG064300 Rh2DG062700 Rh6AG460400 Rh6BG441000 Rh6CG474400 Rh6DG460700
rosa_wichuraiana	Rw2G005700 Rw6G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	405
Acc16I	TGCGCA	1 cut(s)	203
AccII	CGCG	6 cut(s)	189, 234, 253, 314, 376, 413
AccIII	TCCGGA	2 cut(s)	86, 195
AcoI	YGGCCR	4 cut(s)	288, 309, 377, 621
AcyI	GRCGYC	3 cut(s)	192, 402, 416
AfaI	GTAC	2 cut(s)	10, 587
AfiI	CCNNNNNNNGG	3 cut(s)	286, 412, 566
AgsI	TTSAA	2 cut(s)	459, 717
AjiI	CACGTC	2 cut(s)	307, 471
AjnI	CCWGG	1 cut(s)	405
AluBI	AGCT	3 cut(s)	48, 299, 538
AluI	AGCT	3 cut(s)	48, 299, 538
Alw21I	GWGCWC	1 cut(s)	301
Alw26I	GTCTC	5 cut(s)	122, 156, 226, 393, 505
AlwNI	CAGNNNCTG	1 cut(s)	38
Ama87I	CYCGRG	2 cut(s)	263, 396
Aor13HI	TCCGGA	2 cut(s)	86, 195
AoxI	GGCC	6 cut(s)	288, 309, 377, 381, 408, 621
ApeKI	GCWGC	3 cut(s)	45, 370, 425
AspLEI	GCGC	2 cut(s)	204, 255
AspS9I	GGNCC	2 cut(s)	89, 267
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	2 cut(s)	54, 108
AvaI	CYCGRG	2 cut(s)	263, 396
AvaII	GGWCC	2 cut(s)	89, 267
BanII	GRGCYC	2 cut(s)	240, 301
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	301
BbvI	GCAGC	3 cut(s)	57, 357, 412
BceAI	ACGGC	1 cut(s)	634
BcgI	CGANNNNNNTGC	2 cut(s)	244, 278
BciT130I	CCWGG	1 cut(s)	407
BcnI	CCSGG	1 cut(s)	179
BcoDI	GTCTC	5 cut(s)	122, 156, 226, 393, 505
BfaI	CTAG	1 cut(s)	111
BfmI	CTRYAG	2 cut(s)	507, 656
BglI	GCCNNNNNGGC	1 cut(s)	652
BlpI	GCTNAGC	1 cut(s)	539
BmcAI	AGTACT	1 cut(s)	10
Bme1390I	CCNGG	2 cut(s)	179, 407
Bme18I	GGWCC	2 cut(s)	89, 267
BmeT110I	CYCGRG	2 cut(s)	263, 396
BmgBI	CACGTC	2 cut(s)	307, 471
BmgT120I	GGNCC	2 cut(s)	89, 267
BmiI	GGNNCC	1 cut(s)	268
BmrFI	CCNGG	2 cut(s)	179, 407
BmrI	ACTGGG	1 cut(s)	217
BmsI	GCATC	2 cut(s)	189, 330
BmuI	ACTGGG	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	151
Bpu1102I	GCTNAGC	1 cut(s)	539
BpuMI	CCSGG	1 cut(s)	179
BsaHI	GRCGYC	3 cut(s)	192, 402, 416
BsaI	GGTCTC	2 cut(s)	226, 505
BsaJI	CCNNGG	6 cut(s)	187, 374, 411, 420, 624, 650
BsaWI	WCCGGW	3 cut(s)	86, 118, 195
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	3 cut(s)	286, 412, 566
Bse118I	RCCGGY	2 cut(s)	379, 719
Bse1I	ACTGG	2 cut(s)	212, 439
BseAI	TCCGGA	2 cut(s)	86, 195
BseBI	CCWGG	1 cut(s)	407
BseDI	CCNNGG	6 cut(s)	187, 374, 411, 420, 624, 650
BseGI	GGATG	2 cut(s)	50, 204
BseLI	CCNNNNNNNGG	3 cut(s)	286, 412, 566
BseMII	CTCAG	4 cut(s)	35, 348, 373, 530
BseNI	ACTGG	2 cut(s)	212, 439
BseRI	GAGGAG	1 cut(s)	548
BseX3I	CGGCCG	2 cut(s)	377, 621
BseXI	GCAGC	3 cut(s)	57, 357, 412
Bsh1236I	CGCG	6 cut(s)	189, 234, 253, 314, 376, 413
Bsh1285I	CGRYCG	3 cut(s)	380, 525, 624
BshFI	GGCC	6 cut(s)	290, 311, 379, 383, 410, 623
BsiEI	CGRYCG	3 cut(s)	380, 525, 624
BsiHKAI	GWGCWC	1 cut(s)	301
BsiHKCI	CYCGRG	2 cut(s)	263, 396
BsiSI	CCGG	6 cut(s)	87, 119, 179, 196, 380, 720
BsiWI	CGTACG	1 cut(s)	585
BslFI	GGGAC	4 cut(s)	170, 280, 583, 683
BslI	CCNNNNNNNGG	3 cut(s)	286, 412, 566
BsmAI	GTCTC	5 cut(s)	122, 156, 226, 393, 505
BsmBI	CGTCTC	1 cut(s)	393
BsmFI	GGGAC	4 cut(s)	170, 280, 583, 683
BsnI	GGCC	6 cut(s)	290, 311, 379, 383, 410, 623
Bso31I	GGTCTC	2 cut(s)	226, 505
BsoBI	CYCGRG	2 cut(s)	263, 396
Bsp1286I	GDGCHC	2 cut(s)	240, 301
Bsp13I	TCCGGA	2 cut(s)	86, 195
Bsp143I	GATC	2 cut(s)	147, 546
Bsp1720I	GCTNAGC	1 cut(s)	539
BspANI	GGCC	6 cut(s)	290, 311, 379, 383, 410, 623
BspCNI	CTCAG	4 cut(s)	34, 347, 372, 531
BspEI	TCCGGA	2 cut(s)	86, 195
BspFNI	CGCG	6 cut(s)	189, 234, 253, 314, 376, 413
BspHI	TCATGA	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	268
BspTNI	GGTCTC	2 cut(s)	226, 505
BsrFI	RCCGGY	2 cut(s)	379, 719
BsrI	ACTGG	2 cut(s)	212, 439
BssAI	RCCGGY	2 cut(s)	379, 719
BssECI	CCNNGG	6 cut(s)	187, 374, 411, 420, 624, 650
BssMI	GATC	2 cut(s)	147, 546
BssNI	GRCGYC	3 cut(s)	192, 402, 416
BssT1I	CCWWGG	1 cut(s)	420
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	1 cut(s)	69
Bst6I	CTCTTC	1 cut(s)	61
BstACI	GRCGYC	3 cut(s)	192, 402, 416
BstC8I	GCNNGC	5 cut(s)	78, 173, 236, 381, 390
BstDEI	CTNAG	4 cut(s)	21, 334, 359, 539
BstDSI	CCRYGG	4 cut(s)	187, 374, 411, 650
BstF5I	GGATG	2 cut(s)	50, 204
BstFNI	CGCG	6 cut(s)	189, 234, 253, 314, 376, 413
BstHHI	GCGC	2 cut(s)	204, 255
BstKTI	GATC	2 cut(s)	150, 549
BstMAI	GTCTC	5 cut(s)	122, 156, 226, 393, 505
BstMBI	GATC	2 cut(s)	147, 546
BstMCI	CGRYCG	3 cut(s)	380, 525, 624
BstNI	CCWGG	1 cut(s)	407
BstSCI	CCNGG	2 cut(s)	177, 405
BstSFI	CTRYAG	2 cut(s)	507, 656
BstUI	CGCG	6 cut(s)	189, 234, 253, 314, 376, 413
BstV1I	GCAGC	3 cut(s)	57, 357, 412
BstV2I	GAAGAC	1 cut(s)	63
BstZI	CGGCCG	2 cut(s)	377, 621
BsuRI	GGCC	6 cut(s)	290, 311, 379, 383, 410, 623
BtgI	CCRYGG	4 cut(s)	187, 374, 411, 650
BtrI	CACGTC	2 cut(s)	307, 471
BtsCI	GGATG	2 cut(s)	50, 204
Cac8I	GCNNGC	5 cut(s)	78, 173, 236, 381, 390
CaiI	CAGNNNCTG	1 cut(s)	38
CciI	TCATGA	1 cut(s)	301
CfoI	GCGC	2 cut(s)	204, 255
Cfr10I	RCCGGY	2 cut(s)	379, 719
Cfr13I	GGNCC	2 cut(s)	89, 267
Cfr42I	CCGCGG	3 cut(s)	190, 377, 414
CseI	GACGC	2 cut(s)	181, 405
Csp6I	GTAC	2 cut(s)	9, 586
CviAII	CATG	1 cut(s)	302
CviQI	GTAC	2 cut(s)	9, 586
DdeI	CTNAG	4 cut(s)	21, 334, 359, 539
DpnI	GATC	2 cut(s)	149, 548
DpnII	GATC	2 cut(s)	147, 546
EaeI	YGGCCR	4 cut(s)	288, 309, 377, 621
EagI	CGGCCG	2 cut(s)	377, 621
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
EciI	GGCGGA	1 cut(s)	633
Ecl136II	GAGCTC	1 cut(s)	299
EclXI	CGGCCG	2 cut(s)	377, 621
Eco130I	CCWWGG	1 cut(s)	420
Eco24I	GRGCYC	2 cut(s)	240, 301
Eco31I	GGTCTC	2 cut(s)	226, 505
Eco47I	GGWCC	2 cut(s)	89, 267
Eco52I	CGGCCG	2 cut(s)	377, 621
Eco53kI	GAGCTC	1 cut(s)	299
Eco88I	CYCGRG	2 cut(s)	263, 396
EcoICRI	GAGCTC	1 cut(s)	299
EcoO109I	RGGNCCY	1 cut(s)	267
EcoRII	CCWGG	1 cut(s)	405
EcoT14I	CCWWGG	1 cut(s)	420
EcoT38I	GRGCYC	2 cut(s)	240, 301
ErhI	CCWWGG	1 cut(s)	420
Esp3I	CGTCTC	1 cut(s)	393
FaeI	CATG	1 cut(s)	305
FaiI	YATR	3 cut(s)	303, 509, 739
FaqI	GGGAC	4 cut(s)	170, 280, 583, 683
FatI	CATG	1 cut(s)	301
FauI	CCCGC	1 cut(s)	248
FokI	GGATG	2 cut(s)	37, 211
FriOI	GRGCYC	2 cut(s)	240, 301
FseI	GGCCGGCC	1 cut(s)	383
FspBI	CTAG	1 cut(s)	111
FspI	TGCGCA	1 cut(s)	203
GlaI	GCGC	2 cut(s)	203, 254
GsuI	CTGGAG	1 cut(s)	151
HaeIII	GGCC	6 cut(s)	290, 311, 379, 383, 410, 623
HapII	CCGG	6 cut(s)	87, 119, 179, 196, 380, 720
HgaI	GACGC	2 cut(s)	181, 405
HhaI	GCGC	2 cut(s)	204, 255
Hin1I	GRCGYC	3 cut(s)	192, 402, 416
Hin1II	CATG	1 cut(s)	305
Hin6I	GCGC	2 cut(s)	202, 253
HinP1I	GCGC	2 cut(s)	202, 253
HinfI	GANTC	7 cut(s)	122, 164, 446, 527, 562, 581, 617
HpaII	CCGG	6 cut(s)	87, 119, 179, 196, 380, 720
HphI	GGTGA	2 cut(s)	54, 108
Hpy166II	GTNNAC	4 cut(s)	116, 184, 465, 616
Hpy188I	TCNGA	4 cut(s)	34, 127, 226, 532
Hpy188III	TCNNGA	5 cut(s)	87, 196, 265, 302, 520
Hpy8I	GTNNAC	4 cut(s)	116, 184, 465, 616
Hpy99I	CGWCG	3 cut(s)	481, 484, 487
HpyAV	CCTTC	2 cut(s)	280, 465
HpyCH4III	ACNGT	1 cut(s)	69
HpyCH4IV	ACGT	3 cut(s)	306, 402, 470
HpyCH4V	TGCA	2 cut(s)	80, 436
HpyF3I	CTNAG	4 cut(s)	21, 334, 359, 539
HpySE526I	ACGT	3 cut(s)	306, 402, 470
Hsp92I	GRCGYC	3 cut(s)	192, 402, 416
Hsp92II	CATG	1 cut(s)	305
HspAI	GCGC	2 cut(s)	202, 253
Kpn2I	TCCGGA	2 cut(s)	86, 195
KroI	GCCGGC	1 cut(s)	379
KroNI	GCCGGC	1 cut(s)	381
KspI	CCGCGG	3 cut(s)	190, 377, 414
Kzo9I	GATC	2 cut(s)	147, 546
LmnI	GCTCC	2 cut(s)	397, 535
Lsp1109I	GCAGC	3 cut(s)	57, 357, 412
LweI	GCATC	2 cut(s)	189, 330
MaeI	CTAG	1 cut(s)	111
MaeII	ACGT	3 cut(s)	306, 402, 470
MaeIII	GTNAC	1 cut(s)	575
MalI	GATC	2 cut(s)	149, 548
MboI	GATC	2 cut(s)	147, 546
MboII	GAAGA	3 cut(s)	48, 63, 157
MhlI	GDGCHC	2 cut(s)	240, 301
MluCI	AATT	1 cut(s)	712
MlyI	GAGTC	6 cut(s)	158, 440, 536, 571, 590, 611
MnlI	CCTC	6 cut(s)	64, 394, 526, 527, 619, 721
MroI	TCCGGA	2 cut(s)	86, 195
MroNI	GCCGGC	1 cut(s)	379
MseI	TTAA	1 cut(s)	748
MspA1I	CMGCKG	3 cut(s)	189, 376, 413
MspI	CCGG	6 cut(s)	87, 119, 179, 196, 380, 720
MspR9I	CCNGG	2 cut(s)	179, 407
MvaI	CCWGG	1 cut(s)	407
MvnI	CGCG	6 cut(s)	189, 234, 253, 314, 376, 413
NaeI	GCCGGC	1 cut(s)	381
NciI	CCSGG	1 cut(s)	179
NdeII	GATC	2 cut(s)	147, 546
NgoMIV	GCCGGC	1 cut(s)	379
NlaIII	CATG	1 cut(s)	305
NlaIV	GGNNCC	1 cut(s)	268
NmeAIII	GCCGAG	4 cut(s)	482, 585, 599, 649
NsbI	TGCGCA	1 cut(s)	203
PagI	TCATGA	1 cut(s)	301
PcsI	WCGNNNNNNNCGW	3 cut(s)	476, 482, 585
PdiI	GCCGGC	1 cut(s)	381
PfeI	GAWTC	1 cut(s)	122
Pfl23II	CGTACG	1 cut(s)	585
PflFI	GACNNNGTC	1 cut(s)	526
PleI	GAGTC	6 cut(s)	158, 440, 535, 570, 589, 611
PpsI	GAGTC	6 cut(s)	158, 440, 535, 570, 589, 611
PpuMI	RGGWCCY	1 cut(s)	267
Psp124BI	GAGCTC	1 cut(s)	301
Psp5II	RGGWCCY	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	405
PspLI	CGTACG	1 cut(s)	585
PspN4I	GGNNCC	1 cut(s)	268
PspPI	GGNCC	2 cut(s)	89, 267
PspPPI	RGGWCCY	1 cut(s)	267
PstNI	CAGNNNCTG	1 cut(s)	38
PsyI	GACNNNGTC	1 cut(s)	526
RigI	GGCCGGCC	1 cut(s)	383
RsaI	GTAC	2 cut(s)	10, 587
RsaNI	GTAC	2 cut(s)	9, 586
SacI	GAGCTC	1 cut(s)	301
SacII	CCGCGG	3 cut(s)	190, 377, 414
SaqAI	TTAA	1 cut(s)	748
Sau3AI	GATC	2 cut(s)	147, 546
Sau96I	GGNCC	2 cut(s)	89, 267
ScaI	AGTACT	1 cut(s)	10
SchI	GAGTC	6 cut(s)	158, 440, 536, 571, 590, 611
ScrFI	CCNGG	2 cut(s)	179, 407
SduI	GDGCHC	2 cut(s)	240, 301
SetI	ASST	8 cut(s)	50, 272, 301, 309, 405, 473, 519, 540
SfaNI	GCATC	2 cut(s)	189, 330
SfcI	CTRYAG	2 cut(s)	507, 656
Sfr303I	CCGCGG	3 cut(s)	190, 377, 414
SgrBI	CCGCGG	3 cut(s)	190, 377, 414
SinI	GGWCC	2 cut(s)	89, 267
Sse9I	AATT	1 cut(s)	712
SspMI	CTAG	1 cut(s)	111
SstI	GAGCTC	1 cut(s)	301
StyD4I	CCNGG	2 cut(s)	177, 405
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	1 cut(s)	69
TaiI	ACGT	3 cut(s)	309, 405, 473
TaqI	TCGA	2 cut(s)	444, 521
TaqII	GACCGA	1 cut(s)	539
TasI	AATT	1 cut(s)	712
TatI	WGTACW	1 cut(s)	8
TauI	GCSGC	9 cut(s)	192, 293, 314, 376, 379, 413, 416, 649, 678
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	1 cut(s)	748
Tru9I	TTAA	1 cut(s)	748
TseI	GCWGC	3 cut(s)	45, 370, 425
TspDTI	ATGAA	1 cut(s)	48
Tth111I	GACNNNGTC	1 cut(s)	526
VpaK11BI	GGWCC	2 cut(s)	89, 267
XcmI	CCANNNNNNNNNTGG	1 cut(s)	283
XspI	CTAG	1 cut(s)	111
ZraI	GACGTC	1 cut(s)	403
ZrmI	AGTACT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.