Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004337

Physical Location & Seq

Genomic Coordinates Forward (+)

15304568 .. 15305413

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1193700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCTGACCCAACTCACTCAGAGAACGAGTCAAGCTTCAACTCGTCCTCACCTTCTCCACCTTCTCCACCTTCCCCGTCCTCATCTGGGTTTTCCCAGTCCATTCCTAACTCGGGTCTAAACCAACTACCGGTAAGGTCCGACTCGCCCGGACCGGATCAGAAGCGGGCCAAGCGAGTCAGAGAAACCAGCAGCAAGCACCCGGTTTACAGAGGGGTCCGCATGCGGACATGGGGCAAGTGGGTGTCCGAAATCCGCGAGCCCCGGAAGAAGAATCGGATCTGGCTGGGCACATTCTCGACACCTGAAATGGCCGCGCGTGCTCACGACGTGGCGGCCATGACGATCAAAGGCAACTCCGCGATCCTCAACTTCCCCGGACTCGCCGGGTCGCTGCCCCGACCCGATTCGAACTCGCCCCGGGACATCCAAGCCGCGGCTGCCAAAGCCGCTTCCATGGAAACTCTAAACCCGCCGCCGCTGCCACCACCGTCGCATTCGTCTTCGTCGTCGTCAGCATTGTCACAGTCCTCGTCATCATCCTCAATGGTGGGTACAACAAGTACGAGCGGGGACGCGGGAACGCCAGAGGAGCTGGGGGAGATAGTGAAGCTGCCGAGCCTGGGGACGAGTTACGAGTCGGCCGAGTCGGGGAGCGAATTCGTGTTTGCTGACTCGGTGGAGGGGTGGCTGTATCCTCCGCCGTGGTGGCACAACAGTTATTTGGAGGAGGAGAATGGGTATAATAATCTAATCAATAGTATTATTAGGGATGATCAAATGTTAATGTCTGAGCCACCAGCTGCTGAGTGTGTTGGAGTCGAGGCCTTCTTGTGGCAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

282

Amino Acids

30.21

Weight (kDa)

5.42

Isoelectric Point (pI)

67.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	68 - 118	7.7e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11590 AT5G25810
fragaria_vesca	FvH4_1g05820 FvH4_2g35620
malus_domestica	MD02G1060200.v1.1 MD08G1114100.v1.1 MD15G1093800.v1.1 MD15G1193700.v1.1
prunus_persica	Prupe.1G448600_v2.0.a1 Prupe.7G222700_v2.0.a1
pyrus_communis	pycom02g04920 pycom08g09510 pycom15g17340
rosa_chinensis	RchiOBHm_Chr2g0091471 RchiOBHm_Chr6g0306191
rosa_laevigata	RLG00000010815 RLG00000016227
rosa_multiflora	Rmu_sc0002407.1_g000015 Rmu_sc0003594.1_g000007
rosa_roxburghii	Rroxscaffold_2G00150040 Rroxscaffold_7G00161970
rosa_rugosa	Rorug02G0018200 Rorug06G0347800
rosa_samantha	Rh2BG062600 Rh2CG064300 Rh2DG062700 Rh6AG460400 Rh6BG441000 Rh6CG474400 Rh6DG460700
rosa_wichuraiana	Rw2G005700 Rw6G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	570
AccII	CGCG	6 cut(s)	258, 317, 319, 362, 437, 578
AclWI	GGATC	3 cut(s)	165, 287, 358
AcoI	YGGCCR	3 cut(s)	312, 336, 642
AcsI	RAATTY	1 cut(s)	659
AdeI	CACNNNGTG	1 cut(s)	331
AfaI	GTAC	2 cut(s)	556, 565
AfiI	CCNNNNNNNGG	7 cut(s)	87, 113, 130, 436, 623, 651, 834
AgeI	ACCGGT	1 cut(s)	130
AgsI	TTSAA	1 cut(s)	40
AjiI	CACGTC	1 cut(s)	331
AjnI	CCWGG	1 cut(s)	621
AluBI	AGCT	4 cut(s)	36, 595, 613, 803
AluI	AGCT	4 cut(s)	36, 595, 613, 803
Alw21I	GWGCWC	1 cut(s)	325
AlwI	GGATC	3 cut(s)	165, 287, 358
AlwNI	CAGNNNCTG	1 cut(s)	806
Ama87I	CYCGRG	2 cut(s)	112, 420
AoxI	GGCC	5 cut(s)	168, 312, 336, 642, 825
ApeKI	GCWGC	6 cut(s)	192, 394, 440, 481, 613, 803
ApoI	RAATTY	1 cut(s)	659
AsiGI	ACCGGT	1 cut(s)	130
AspLEI	GCGC	1 cut(s)	319
AspS9I	GGNCC	4 cut(s)	138, 152, 168, 217
AsuC2I	CCSGG	7 cut(s)	150, 203, 265, 378, 388, 421, 422
AsuHPI	GGTGA	1 cut(s)	42
AsuII	TTCGAA	1 cut(s)	410
AvaI	CYCGRG	2 cut(s)	112, 420
AvaII	GGWCC	3 cut(s)	138, 152, 217
BaeGI	GKGCMC	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	264
BbsI	GAAGAC	1 cut(s)	495
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	6 cut(s)	204, 381, 427, 468, 600, 790
BceAI	ACGGC	1 cut(s)	688
BciT130I	CCWGG	1 cut(s)	623
BciVI	GTATCC	1 cut(s)	705
BclI	TGATCA	1 cut(s)	775
BcnI	CCSGG	7 cut(s)	150, 203, 265, 378, 388, 421, 422
BfuI	GTATCC	1 cut(s)	705
BglI	GCCNNNNNGGC	1 cut(s)	709
Bme1390I	CCNGG	8 cut(s)	150, 203, 265, 378, 388, 421, 422, 623
Bme18I	GGWCC	3 cut(s)	138, 152, 217
BmeT110I	CYCGRG	2 cut(s)	112, 420
BmgBI	CACGTC	1 cut(s)	331
BmgT120I	GGNCC	4 cut(s)	138, 152, 168, 217
BmiI	GGNNCC	1 cut(s)	218
BmrFI	CCNGG	8 cut(s)	150, 203, 265, 378, 388, 421, 422, 623
BmrI	ACTGGG	1 cut(s)	91
BmuI	ACTGGG	1 cut(s)	91
BpiI	GAAGAC	1 cut(s)	495
Bpu14I	TTCGAA	1 cut(s)	410
BpuMI	CCSGG	7 cut(s)	150, 203, 265, 378, 388, 421, 422
BsaJI	CCNNGG	8 cut(s)	263, 376, 419, 420, 435, 456, 622, 704
BsaWI	WCCGGW	2 cut(s)	130, 154
BsaXI	ACNNNNNCTCC	2 cut(s)	725, 755
Bsc4I	CCNNNNNNNGG	7 cut(s)	87, 113, 130, 436, 623, 651, 834
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	623
BseDI	CCNNGG	8 cut(s)	263, 376, 419, 420, 435, 456, 622, 704
BseGI	GGATG	3 cut(s)	426, 539, 778
BseLI	CCNNNNNNNGG	7 cut(s)	87, 113, 130, 436, 623, 651, 834
BseMII	CTCAG	3 cut(s)	33, 783, 798
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	3 cut(s)	605, 743, 746
BseSI	GKGCMC	1 cut(s)	293
BseX3I	CGGCCG	1 cut(s)	642
BseXI	GCAGC	6 cut(s)	204, 381, 427, 468, 600, 790
BseYI	CCCAGC	2 cut(s)	286, 595
Bsh1236I	CGCG	6 cut(s)	258, 317, 319, 362, 437, 578
Bsh1285I	CGRYCG	1 cut(s)	645
BshFI	GGCC	5 cut(s)	170, 314, 338, 644, 827
BshTI	ACCGGT	1 cut(s)	130
BsiEI	CGRYCG	1 cut(s)	645
BsiHKAI	GWGCWC	1 cut(s)	325
BsiHKCI	CYCGRG	2 cut(s)	112, 420
BsiSI	CCGG	8 cut(s)	131, 150, 155, 203, 265, 378, 387, 421
BslFI	GGGAC	3 cut(s)	437, 587, 640
BslI	CCNNNNNNNGG	7 cut(s)	87, 113, 130, 436, 623, 651, 834
BsmFI	GGGAC	3 cut(s)	437, 587, 640
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	5 cut(s)	170, 314, 338, 644, 827
BsoBI	CYCGRG	2 cut(s)	112, 420
Bsp119I	TTCGAA	1 cut(s)	410
Bsp1286I	GDGCHC	3 cut(s)	264, 293, 325
Bsp143I	GATC	5 cut(s)	157, 279, 345, 363, 775
Bsp19I	CCATGG	1 cut(s)	456
BspANI	GGCC	5 cut(s)	170, 314, 338, 644, 827
BspCNI	CTCAG	3 cut(s)	32, 784, 799
BspFNI	CGCG	6 cut(s)	258, 317, 319, 362, 437, 578
BspLI	GGNNCC	1 cut(s)	218
BspPI	GGATC	3 cut(s)	165, 287, 358
BspT104I	TTCGAA	1 cut(s)	410
BsrBI	CCGCTC	1 cut(s)	570
BsrFI	RCCGGY	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	97
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	8 cut(s)	263, 376, 419, 420, 435, 456, 622, 704
BssMI	GATC	5 cut(s)	157, 279, 345, 363, 775
BssT1I	CCWWGG	1 cut(s)	456
Bst2UI	CCWGG	1 cut(s)	623
Bst4CI	ACNGT	3 cut(s)	492, 528, 719
BstBI	TTCGAA	1 cut(s)	410
BstC8I	GCNNGC	5 cut(s)	168, 197, 224, 260, 321
BstDEI	CTNAG	3 cut(s)	19, 792, 807
BstDSI	CCRYGG	3 cut(s)	435, 456, 704
BstF5I	GGATG	3 cut(s)	426, 539, 778
BstFNI	CGCG	6 cut(s)	258, 317, 319, 362, 437, 578
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	5 cut(s)	160, 282, 348, 366, 778
BstMBI	GATC	5 cut(s)	157, 279, 345, 363, 775
BstMCI	CGRYCG	1 cut(s)	645
BstMWI	GCNNNNNNNGC	8 cut(s)	172, 320, 440, 446, 449, 481, 592, 709
BstNI	CCWGG	1 cut(s)	623
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	8 cut(s)	148, 201, 263, 376, 386, 419, 420, 621
BstSLI	GKGCMC	1 cut(s)	293
BstUI	CGCG	6 cut(s)	258, 317, 319, 362, 437, 578
BstV1I	GCAGC	6 cut(s)	204, 381, 427, 468, 600, 790
BstV2I	GAAGAC	1 cut(s)	495
BstX2I	RGATCY	1 cut(s)	279
BstYI	RGATCY	1 cut(s)	279
BstZI	CGGCCG	1 cut(s)	642
BsuI	GTATCC	1 cut(s)	705
BsuRI	GGCC	5 cut(s)	170, 314, 338, 644, 827
BtgI	CCRYGG	3 cut(s)	435, 456, 704
BtrI	CACGTC	1 cut(s)	331
BtsCI	GGATG	3 cut(s)	426, 539, 778
Cac8I	GCNNGC	5 cut(s)	168, 197, 224, 260, 321
CaiI	CAGNNNCTG	1 cut(s)	806
CfoI	GCGC	1 cut(s)	319
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	4 cut(s)	138, 152, 168, 217
Cfr42I	CCGCGG	1 cut(s)	438
Cfr9I	CCCGGG	1 cut(s)	420
CpoI	CGGWCCG	1 cut(s)	152
CseI	GACGC	1 cut(s)	584
Csp6I	GTAC	2 cut(s)	555, 564
CspAI	ACCGGT	1 cut(s)	130
CspI	CGGWCCG	1 cut(s)	152
CviAII	CATG	4 cut(s)	223, 231, 340, 457
CviQI	GTAC	2 cut(s)	555, 564
DdeI	CTNAG	3 cut(s)	19, 792, 807
DpnI	GATC	5 cut(s)	159, 281, 347, 365, 777
DpnII	GATC	5 cut(s)	157, 279, 345, 363, 775
DraIII	CACNNNGTG	1 cut(s)	331
EaeI	YGGCCR	3 cut(s)	312, 336, 642
EagI	CGGCCG	1 cut(s)	642
EciI	GGCGGA	1 cut(s)	690
EclXI	CGGCCG	1 cut(s)	642
Eco130I	CCWWGG	1 cut(s)	456
Eco147I	AGGCCT	1 cut(s)	827
Eco24I	GRGCYC	1 cut(s)	264
Eco47I	GGWCC	3 cut(s)	138, 152, 217
Eco52I	CGGCCG	1 cut(s)	642
Eco88I	CYCGRG	2 cut(s)	112, 420
EcoRI	GAATTC	1 cut(s)	659
EcoRII	CCWGG	1 cut(s)	621
EcoT14I	CCWWGG	1 cut(s)	456
EcoT38I	GRGCYC	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	456
FaeI	CATG	4 cut(s)	226, 234, 343, 460
FaiI	YATR	5 cut(s)	224, 232, 341, 458, 744
FaqI	GGGAC	3 cut(s)	437, 587, 640
FatI	CATG	4 cut(s)	222, 230, 339, 456
FauI	CCCGC	4 cut(s)	159, 480, 563, 571
FbaI	TGATCA	1 cut(s)	775
FokI	GGATG	3 cut(s)	413, 526, 785
FriOI	GRGCYC	1 cut(s)	264
GlaI	GCGC	1 cut(s)	318
GsaI	CCCAGC	2 cut(s)	290, 599
HaeIII	GGCC	5 cut(s)	170, 314, 338, 644, 827
HapII	CCGG	8 cut(s)	131, 150, 155, 203, 265, 378, 387, 421
HgaI	GACGC	1 cut(s)	584
HhaI	GCGC	1 cut(s)	319
Hin1II	CATG	4 cut(s)	226, 234, 343, 460
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HindIII	AAGCTT	1 cut(s)	34
HpaII	CCGG	8 cut(s)	131, 150, 155, 203, 265, 378, 387, 421
HphI	GGTGA	1 cut(s)	42
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	7 cut(s)	22, 142, 162, 182, 250, 279, 793
Hpy188III	TCNNGA	2 cut(s)	298, 326
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	4 cut(s)	332, 496, 511, 514
HpyAV	CCTTC	4 cut(s)	63, 72, 81, 838
HpyCH4III	ACNGT	3 cut(s)	492, 528, 719
HpyCH4IV	ACGT	1 cut(s)	330
HpyF10VI	GCNNNNNNNGC	8 cut(s)	172, 320, 440, 446, 449, 481, 592, 709
HpyF3I	CTNAG	3 cut(s)	19, 792, 807
HpySE526I	ACGT	1 cut(s)	330
Hsp92II	CATG	4 cut(s)	226, 234, 343, 460
HspAI	GCGC	1 cut(s)	317
Ksp22I	TGATCA	1 cut(s)	775
KspI	CCGCGG	1 cut(s)	438
Kzo9I	GATC	5 cut(s)	157, 279, 345, 363, 775
LmnI	GCTCC	2 cut(s)	592, 654
Lsp1109I	GCAGC	6 cut(s)	204, 381, 427, 468, 600, 790
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	2 cut(s)	522, 632
MalI	GATC	5 cut(s)	159, 281, 347, 365, 777
MbiI	CCGCTC	1 cut(s)	570
MboI	GATC	5 cut(s)	157, 279, 345, 363, 775
MboII	GAAGA	3 cut(s)	280, 283, 495
MflI	RGATCY	1 cut(s)	279
MhlI	GDGCHC	3 cut(s)	264, 293, 325
MluCI	AATT	1 cut(s)	659
MlyI	GAGTC	8 cut(s)	38, 137, 186, 375, 647, 656, 668, 828
MmeI	TCCRAC	2 cut(s)	165, 796
MseI	TTAA	2 cut(s)	785, 844
MspA1I	CMGCKG	3 cut(s)	437, 481, 803
MspI	CCGG	8 cut(s)	131, 150, 155, 203, 265, 378, 387, 421
MspR9I	CCNGG	8 cut(s)	150, 203, 265, 378, 388, 421, 422, 623
Mva1269I	GAATGC	1 cut(s)	496
MvaI	CCWGG	1 cut(s)	623
MvnI	CGCG	6 cut(s)	258, 317, 319, 362, 437, 578
MwoI	GCNNNNNNNGC	8 cut(s)	172, 320, 440, 446, 449, 481, 592, 709
NciI	CCSGG	7 cut(s)	150, 203, 265, 378, 388, 421, 422
NcoI	CCATGG	1 cut(s)	456
NdeII	GATC	5 cut(s)	157, 279, 345, 363, 775
NlaIII	CATG	4 cut(s)	226, 234, 343, 460
NlaIV	GGNNCC	1 cut(s)	218
NmeAIII	GCCGAG	2 cut(s)	642, 670
NmuCI	GTSAC	1 cut(s)	522
NspI	RCATGY	1 cut(s)	226
NspV	TTCGAA	1 cut(s)	410
PaeI	GCATGC	1 cut(s)	226
PceI	AGGCCT	1 cut(s)	827
PcsI	WCGNNNNNNNCGW	2 cut(s)	506, 642
PctI	GAATGC	1 cut(s)	496
PfeI	GAWTC	2 cut(s)	274, 407
PinAI	ACCGGT	1 cut(s)	130
PleI	GAGTC	8 cut(s)	37, 137, 185, 375, 646, 655, 668, 827
PpsI	GAGTC	8 cut(s)	37, 137, 185, 375, 646, 655, 668, 827
Psp6I	CCWGG	1 cut(s)	621
PspFI	CCCAGC	2 cut(s)	286, 595
PspGI	CCWGG	1 cut(s)	621
PspN4I	GGNNCC	1 cut(s)	218
PspPI	GGNCC	4 cut(s)	138, 152, 168, 217
PstNI	CAGNNNCTG	1 cut(s)	806
PsuI	RGATCY	1 cut(s)	279
PvuII	CAGCTG	1 cut(s)	803
RsaI	GTAC	2 cut(s)	556, 565
RsaNI	GTAC	2 cut(s)	555, 564
Rsr2I	CGGWCCG	1 cut(s)	152
RsrII	CGGWCCG	1 cut(s)	152
SacII	CCGCGG	1 cut(s)	438
SaqAI	TTAA	2 cut(s)	785, 844
Sau3AI	GATC	5 cut(s)	157, 279, 345, 363, 775
Sau96I	GGNCC	4 cut(s)	138, 152, 168, 217
SchI	GAGTC	8 cut(s)	38, 137, 186, 375, 647, 656, 668, 828
ScrFI	CCNGG	8 cut(s)	150, 203, 265, 378, 388, 421, 422, 623
SduI	GDGCHC	3 cut(s)	264, 293, 325
Sfr303I	CCGCGG	1 cut(s)	438
SfuI	TTCGAA	1 cut(s)	410
SgrBI	CCGCGG	1 cut(s)	438
SinI	GGWCC	3 cut(s)	138, 152, 217
SmaI	CCCGGG	1 cut(s)	422
SphI	GCATGC	1 cut(s)	226
Sse9I	AATT	1 cut(s)	659
SseBI	AGGCCT	1 cut(s)	827
StuI	AGGCCT	1 cut(s)	827
StyD4I	CCNGG	8 cut(s)	148, 201, 263, 376, 386, 419, 420, 621
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	3 cut(s)	492, 528, 719
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	3 cut(s)	299, 410, 822
TasI	AATT	1 cut(s)	659
TauI	GCSGC	7 cut(s)	317, 338, 437, 440, 452, 478, 481
TfiI	GAWTC	2 cut(s)	274, 407
Tru1I	TTAA	2 cut(s)	785, 844
Tru9I	TTAA	2 cut(s)	785, 844
TseFI	GTSAC	1 cut(s)	522
TseI	GCWGC	6 cut(s)	192, 394, 440, 481, 613, 803
Tsp45I	GTSAC	1 cut(s)	522
TspMI	CCCGGG	1 cut(s)	420
VpaK11BI	GGWCC	3 cut(s)	138, 152, 217
XapI	RAATTY	1 cut(s)	659
XceI	RCATGY	1 cut(s)	226
XmaI	CCCGGG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.