MD15G1093800.v1.1

Dehydration-responsive element-binding protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0004337
Physical Location & Seq
Reverse (-)
6562706 .. 6563499
794 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1093800.v1.1.491

Sequence Viewer

Length: 738 bp
ATGAGCGCTGATCAACCCCAGAGTTCAGAAACTGAGAGCAGCTCCAACTCGTCCGCTTCCGCATCGCCTCCTTCCTCGCCTTCCTCACTCCAAACCCAAAACCCACAAAAACCCAGCTCGCCAATTCACCAAGGAATCGACACTCCCTGCAAAAAAAATGCCAAACGGGTCAGAGACTCCAGCAAACACCCGGTTTATCGGGGGGTCCGAATGAGGAACTGGGGCAAATGGGTATCCGAAATCCGCGAGCCTCGCAAGAAATCGCGCATTTGGCTCGGCACTTTTCCGACTCCTGAAATGGCCGCCAGGGCCCACGACGTCGCCGCTTTGAGCATCAAGGGCAACTCAGCGATTCTCAACTTCCCAGAGTTCTCCGACTTGCTGCCTCGCCCGGTTTCAAACGCCCCCCGCGATGTCCAGGCGGCCGCCAGCAAAGCCGCCGAAATGCACCAATTCGACTCCATCCCGTCAATGTCGGCGTCCCCCTCGTCGCTGTCCTCGCTGGTCTCGGCCATAGACAACTTGTCGTCCGAGTCGGAGGAGCTGAGCGAGATCGTCGAGTTGCCGAGTCTGAGTTGCGAGTCGACCGAGTTGAGAAGCGAGTTCGTGTTTGTGGACTCGGAGGACCAATGGGTTTATCCGCCGCCGTGGCTGCCGCGCGTTGGGGAGTTCGAATGCAGTGAGTTGGGTTCGGCGAGTTCAGTTGGGTTTGAGTGTTTGTTATGGGATTATAATTAA

Protein Analysis

246

Amino Acids

26.83

Weight (kDa)

5.11

Isoelectric Point (pI)

74.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 64 - 114 1.8e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 732
AatII GACGTC 1 cut(s) 321
AccI GTMKAC 1 cut(s) 584
AccII CGCG 5 cut(s) 246, 265, 411, 658, 660
AcoI YGGCCR 3 cut(s) 300, 423, 510
AcyI GRCGYC 2 cut(s) 318, 479
AfeI AGCGCT 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 662
AgsI TTSAA 1 cut(s) 399
AhdI GACNNNNNGTC 1 cut(s) 523
AjnI CCWGG 2 cut(s) 305, 417
AluBI AGCT 3 cut(s) 42, 117, 544
AluI AGCT 3 cut(s) 42, 117, 544
Alw26I GTCTC 2 cut(s) 168, 511
AlwNI CAGNNNCTG 1 cut(s) 32
Aor51HI AGCGCT 1 cut(s) 7
AoxI GGCC 4 cut(s) 300, 309, 423, 510
ApaI GGGCCC 1 cut(s) 313
ApeKI GCWGC 3 cut(s) 39, 382, 652
AspLEI GCGC 3 cut(s) 8, 267, 660
AspS9I GGNCC 4 cut(s) 205, 309, 310, 625
AsuC2I CCSGG 2 cut(s) 191, 392
AsuHPI GGTGA 1 cut(s) 119
AsuII TTCGAA 1 cut(s) 672
AvaII GGWCC 2 cut(s) 205, 625
BaeGI GKGCMC 1 cut(s) 313
BanII GRGCYC 1 cut(s) 313
BbvI GCAGC 3 cut(s) 51, 369, 639
BccI CCATC 1 cut(s) 470
BceAI ACGGC 1 cut(s) 631
BcgI CGANNNNNNTGC 2 cut(s) 256, 290
BciT130I CCWGG 2 cut(s) 307, 419
BciVI GTATCC 1 cut(s) 244
BclI TGATCA 1 cut(s) 10
BcnI CCSGG 2 cut(s) 191, 392
BcoDI GTCTC 2 cut(s) 168, 511
BfoI RGCGCY 1 cut(s) 9
BfuI GTATCC 1 cut(s) 244
BglI GCCNNNNNGGC 2 cut(s) 308, 649
BlpI GCTNAGC 1 cut(s) 545
Bme1390I CCNGG 4 cut(s) 191, 307, 392, 419
Bme18I GGWCC 2 cut(s) 205, 625
BmeRI GACNNNNNGTC 1 cut(s) 523
BmgT120I GGNCC 4 cut(s) 205, 309, 310, 625
BmiI GGNNCC 2 cut(s) 206, 311
BmrFI CCNGG 4 cut(s) 191, 307, 392, 419
BmrI ACTGGG 1 cut(s) 229
BmsI GCATC 2 cut(s) 71, 342
BmuI ACTGGG 1 cut(s) 229
BplI GAGNNNNNCTC 2 cut(s) 26, 58
BpmI CTGGAG 1 cut(s) 163
Bpu1102I GCTNAGC 1 cut(s) 545
Bpu14I TTCGAA 1 cut(s) 672
BpuMI CCSGG 2 cut(s) 191, 392
BsaHI GRCGYC 2 cut(s) 318, 479
BsaI GGTCTC 1 cut(s) 511
BsaJI CCNNGG 3 cut(s) 130, 306, 647
Bsc4I CCNNNNNNNGG 1 cut(s) 662
Bse1I ACTGG 1 cut(s) 224
BseBI CCWGG 2 cut(s) 307, 419
BseDI CCNNGG 3 cut(s) 130, 306, 647
BseGI GGATG 1 cut(s) 462
BseLI CCNNNNNNNGG 1 cut(s) 662
BseMII CTCAG 4 cut(s) 24, 360, 536, 563
BseNI ACTGG 1 cut(s) 224
BseRI GAGGAG 1 cut(s) 554
BseSI GKGCMC 1 cut(s) 313
BseX3I CGGCCG 1 cut(s) 423
BseXI GCAGC 3 cut(s) 51, 369, 639
BseYI CCCAGC 1 cut(s) 113
Bsh1236I CGCG 5 cut(s) 246, 265, 411, 658, 660
Bsh1285I CGRYCG 2 cut(s) 426, 588
BshFI GGCC 4 cut(s) 302, 311, 425, 512
BsiEI CGRYCG 2 cut(s) 426, 588
BsiSI CCGG 2 cut(s) 191, 392
BslFI GGGAC 1 cut(s) 466
BslI CCNNNNNNNGG 1 cut(s) 662
BsmAI GTCTC 2 cut(s) 168, 511
BsmFI GGGAC 1 cut(s) 466
BsmI GAATGC 1 cut(s) 680
BsnI GGCC 4 cut(s) 302, 311, 425, 512
Bso31I GGTCTC 1 cut(s) 511
Bsp119I TTCGAA 1 cut(s) 672
Bsp120I GGGCCC 1 cut(s) 309
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 2 cut(s) 10, 552
Bsp1720I GCTNAGC 1 cut(s) 545
BspANI GGCC 4 cut(s) 302, 311, 425, 512
BspCNI CTCAG 4 cut(s) 25, 359, 537, 564
BspFNI CGCG 5 cut(s) 246, 265, 411, 658, 660
BspLI GGNNCC 2 cut(s) 206, 311
BspT104I TTCGAA 1 cut(s) 672
BspTNI GGTCTC 1 cut(s) 511
BsrI ACTGG 1 cut(s) 224
BssECI CCNNGG 3 cut(s) 130, 306, 647
BssMI GATC 2 cut(s) 10, 552
BssNI GRCGYC 2 cut(s) 318, 479
BssT1I CCWWGG 1 cut(s) 130
Bst2UI CCWGG 2 cut(s) 307, 419
BstACI GRCGYC 2 cut(s) 318, 479
BstBI TTCGAA 1 cut(s) 672
BstC8I GCNNGC 3 cut(s) 119, 248, 430
BstDEI CTNAG 4 cut(s) 33, 346, 545, 572
BstDSI CCRYGG 1 cut(s) 647
BstF5I GGATG 1 cut(s) 462
BstFNI CGCG 5 cut(s) 246, 265, 411, 658, 660
BstH2I RGCGCY 1 cut(s) 9
BstHHI GCGC 3 cut(s) 8, 267, 660
BstKTI GATC 2 cut(s) 13, 555
BstMAI GTCTC 2 cut(s) 168, 511
BstMBI GATC 2 cut(s) 10, 552
BstMCI CGRYCG 2 cut(s) 426, 588
BstMWI GCNNNNNNNGC 8 cut(s) 252, 271, 308, 339, 434, 499, 649, 652
BstNI CCWGG 2 cut(s) 307, 419
BstSCI CCNGG 4 cut(s) 189, 305, 390, 417
BstSLI GKGCMC 1 cut(s) 313
BstUI CGCG 5 cut(s) 246, 265, 411, 658, 660
BstV1I GCAGC 3 cut(s) 51, 369, 639
BstZI CGGCCG 1 cut(s) 423
BsuI GTATCC 1 cut(s) 244
BsuRI GGCC 4 cut(s) 302, 311, 425, 512
BtgI CCRYGG 1 cut(s) 647
BtgZI GCGATG 2 cut(s) 48, 426
BtsCI GGATG 1 cut(s) 462
BtsI GCAGTG 1 cut(s) 685
BtsIMutI CAGTG 1 cut(s) 685
Cac8I GCNNGC 3 cut(s) 119, 248, 430
CaiI CAGNNNCTG 1 cut(s) 32
CciNI GCGGCCGC 1 cut(s) 423
CfoI GCGC 3 cut(s) 8, 267, 660
Cfr13I GGNCC 4 cut(s) 205, 309, 310, 625
CseI GACGC 1 cut(s) 468
DdeI CTNAG 4 cut(s) 33, 346, 545, 572
DpnI GATC 2 cut(s) 12, 554
DpnII GATC 2 cut(s) 10, 552
DriI GACNNNNNGTC 1 cut(s) 523
EaeI YGGCCR 3 cut(s) 300, 423, 510
EagI CGGCCG 1 cut(s) 423
Eam1105I GACNNNNNGTC 1 cut(s) 523
EciI GGCGGA 1 cut(s) 630
EclXI CGGCCG 1 cut(s) 423
Eco130I CCWWGG 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 313
Eco31I GGTCTC 1 cut(s) 511
Eco47I GGWCC 2 cut(s) 205, 625
Eco47III AGCGCT 1 cut(s) 7
Eco52I CGGCCG 1 cut(s) 423
EcoO109I RGGNCCY 1 cut(s) 309
EcoRII CCWGG 2 cut(s) 305, 417
EcoT14I CCWWGG 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 313
ErhI CCWWGG 1 cut(s) 130
FaiI YATR 3 cut(s) 515, 724, 732
FaqI GGGAC 1 cut(s) 466
FauI CCCGC 1 cut(s) 416
FbaI TGATCA 1 cut(s) 10
FblI GTMKAC 1 cut(s) 584
FokI GGATG 1 cut(s) 449
FriOI GRGCYC 1 cut(s) 313
GlaI GCGC 3 cut(s) 7, 266, 659
GsaI CCCAGC 1 cut(s) 117
GsuI CTGGAG 1 cut(s) 163
HaeII RGCGCY 1 cut(s) 9
HaeIII GGCC 4 cut(s) 302, 311, 425, 512
HapII CCGG 2 cut(s) 191, 392
HgaI GACGC 1 cut(s) 468
HhaI GCGC 3 cut(s) 8, 267, 660
Hin1I GRCGYC 2 cut(s) 318, 479
Hin6I GCGC 3 cut(s) 6, 265, 658
HinP1I GCGC 3 cut(s) 6, 265, 658
HincII GTYRAC 1 cut(s) 585
HindII GTYRAC 1 cut(s) 585
HinfI GANTC 9 cut(s) 135, 176, 289, 352, 458, 533, 568, 581, 617
HpaII CCGG 2 cut(s) 191, 392
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 2 cut(s) 585, 616
Hpy188III TCNNGA 1 cut(s) 293
Hpy8I GTNNAC 2 cut(s) 585, 616
Hpy99I CGWCG 4 cut(s) 320, 323, 493, 560
HpyAV CCTTC 2 cut(s) 81, 90
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 3 cut(s) 150, 448, 678
HpyF10VI GCNNNNNNNGC 8 cut(s) 252, 271, 308, 339, 434, 499, 649, 652
HpyF3I CTNAG 4 cut(s) 33, 346, 545, 572
HpySE526I ACGT 1 cut(s) 318
Hsp92I GRCGYC 2 cut(s) 318, 479
HspAI GCGC 3 cut(s) 6, 265, 658
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 2 cut(s) 10, 552
LmnI GCTCC 2 cut(s) 47, 541
Lsp1109I GCAGC 3 cut(s) 51, 369, 639
LweI GCATC 2 cut(s) 71, 342
MaeII ACGT 1 cut(s) 318
MalI GATC 2 cut(s) 12, 554
MboI GATC 2 cut(s) 10, 552
MhlI GDGCHC 1 cut(s) 313
MluCI AATT 3 cut(s) 123, 452, 733
MlyI GAGTC 7 cut(s) 170, 283, 452, 542, 577, 590, 611
MmeI TCCRAC 4 cut(s) 69, 311, 399, 516
MseI TTAA 1 cut(s) 736
MspI CCGG 2 cut(s) 191, 392
MspR9I CCNGG 4 cut(s) 191, 307, 392, 419
Mva1269I GAATGC 1 cut(s) 680
MvaI CCWGG 2 cut(s) 307, 419
MvnI CGCG 5 cut(s) 246, 265, 411, 658, 660
MwoI GCNNNNNNNGC 8 cut(s) 252, 271, 308, 339, 434, 499, 649, 652
NciI CCSGG 2 cut(s) 191, 392
NdeII GATC 2 cut(s) 10, 552
NlaIV GGNNCC 2 cut(s) 206, 311
NmeAIII GCCGAG 3 cut(s) 255, 488, 591
NotI GCGGCCGC 1 cut(s) 423
NspV TTCGAA 1 cut(s) 672
PcsI WCGNNNNNNNCGW 2 cut(s) 205, 408
PctI GAATGC 1 cut(s) 680
PfeI GAWTC 2 cut(s) 135, 352
PleI GAGTC 7 cut(s) 170, 283, 452, 541, 576, 589, 611
PpsI GAGTC 7 cut(s) 170, 283, 452, 541, 576, 589, 611
PsiI TTATAA 1 cut(s) 732
Psp6I CCWGG 2 cut(s) 305, 417
PspFI CCCAGC 1 cut(s) 113
PspGI CCWGG 2 cut(s) 305, 417
PspN4I GGNNCC 2 cut(s) 206, 311
PspOMI GGGCCC 1 cut(s) 309
PspPI GGNCC 4 cut(s) 205, 309, 310, 625
PstNI CAGNNNCTG 1 cut(s) 32
SalI GTCGAC 1 cut(s) 583
SaqAI TTAA 1 cut(s) 736
Sau3AI GATC 2 cut(s) 10, 552
Sau96I GGNCC 4 cut(s) 205, 309, 310, 625
SchI GAGTC 7 cut(s) 170, 283, 452, 542, 577, 590, 611
ScrFI CCNGG 4 cut(s) 191, 307, 392, 419
SduI GDGCHC 1 cut(s) 313
SetI ASST 4 cut(s) 44, 119, 321, 546
SfaNI GCATC 2 cut(s) 71, 342
SfiI GGCCNNNNNGGCC 1 cut(s) 308
SfuI TTCGAA 1 cut(s) 672
SinI GGWCC 2 cut(s) 205, 625
Sse9I AATT 3 cut(s) 123, 452, 733
StyD4I CCNGG 4 cut(s) 189, 305, 390, 417
StyI CCWWGG 1 cut(s) 130
TaiI ACGT 1 cut(s) 321
TaqI TCGA 5 cut(s) 138, 456, 558, 584, 672
TaqII GACCGA 1 cut(s) 602
TasI AATT 3 cut(s) 123, 452, 733
TauI GCSGC 7 cut(s) 305, 326, 425, 428, 440, 646, 658
TfiI GAWTC 2 cut(s) 135, 352
Tru1I TTAA 1 cut(s) 736
Tru9I TTAA 1 cut(s) 736
TscAI CASTG 1 cut(s) 685
TseI GCWGC 3 cut(s) 39, 382, 652
TspRI CASTG 1 cut(s) 685
VpaK11BI GGWCC 2 cut(s) 205, 625
XmiI GTMKAC 1 cut(s) 584
ZraI GACGTC 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.