Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0004337

Physical Location & Seq

Genomic Coordinates Forward (+)

3217304 .. 3218613

Gene Structure 1310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g04920.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGTCAACAGAATGATGAAAACGATGGGGTTAAAAGGAGGGAGTCAGACCGACTCAGTATTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCTCCTCGAATAAATCCCCTCCCTTCACTCGCTCTTGTTTCTCAATTCCCCCTCTTCCTTTCCCGTTTCCCTCACTCACCCACACACGCAACAACTACGTGCACTCTCCAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAGCGTTACCCTATATATAATATAACTCGGTCACACTTCCTGAATCTCACAAAAGCCAACTCCTTTCCACTACCAGAACGCATTCTATTTATAGTAAACCAGAGGAAGAAACGAAAGCTCGAAACTTTTAGCTTCAACTCCTCCTCACACTCCCCTCCTTCCCCGTCCTCATCTGGGTTTTCCCACTCCATTCCGAACCCCGGTCAAAACCCACTTCCCGAAATGTCCAACTCGCCAGACCCGGATCAGAAGCGGGCCAAGCGAGCCAGAGAAACCAGCAGCAAGCACCCAGTTTACAGAGGGGTCCGAATGCGGACATGGGGCAAGTGGGTCTCAGAAATCCGCGAGCCCAGGAAGAAGAATCGGATCTGGCTCGGTACATTCTCGACACCCGAAATGGCCGCGCGTGCCCACGACGTGGCAGCGCTGACCATCAAAGGCAACTCCGCGATCCTCAACTTCCCCGGACTCGTCGGGTTGCTGCCTCGACCCGACTCGAACTCTCCTCGGGACATACAAGCCGCGGCTTTCAAAGCCGCTTCCATGGAAACTCTAAATGCTCCGCCTCCTCCACCGTCGCAGTCTTCTTCGTCGTCGTCGTCAGCATTGTCACAGTCCTCACCATCATCCTCAATGGTGGCTGCGACAAGTACGAGCGAGGACGCAGGAACGCCGGAGGAGCTGGGGGAGATAGTGGAGCTGCCGAGCCTGGGAACGAGCTACGAGTCGGCCCAGTCGGGGAGCGAGCTCGTGTTTGCTGATTCGGTGGAGGGGTGGCTGTATCCTCCGCCGTGGTGGCACAACAGTTATTTCGAGGAAGATTACGGGTATAATAGTCTTATCAACAGTATTATTAGGGATGATCAAATGTTAATGCCTGAACCACCAGCTGCCGAGTGTGTTGAAGTTGAGGCCTCATTGTGGCATCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

393

Amino Acids

43.12

Weight (kDa)

8.76

Isoelectric Point (pI)

65.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11590 AT5G25810
fragaria_vesca	FvH4_1g05820 FvH4_2g35620
malus_domestica	MD02G1060200.v1.1 MD08G1114100.v1.1 MD15G1093800.v1.1 MD15G1193700.v1.1
prunus_persica	Prupe.1G448600_v2.0.a1 Prupe.7G222700_v2.0.a1
pyrus_communis	pycom02g04920 pycom08g09510 pycom15g17340
rosa_chinensis	RchiOBHm_Chr2g0091471 RchiOBHm_Chr6g0306191
rosa_laevigata	RLG00000010815 RLG00000016227
rosa_multiflora	Rmu_sc0002407.1_g000015 Rmu_sc0003594.1_g000007
rosa_roxburghii	Rroxscaffold_2G00150040 Rroxscaffold_7G00161970
rosa_rugosa	Rorug02G0018200 Rorug06G0347800
rosa_samantha	Rh2BG062600 Rh2CG064300 Rh2DG062700 Rh6AG460400 Rh6BG441000 Rh6CG474400 Rh6DG460700
rosa_wichuraiana	Rw2G005700 Rw6G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	664
AccII	CGCG	5 cut(s)	591, 650, 652, 695, 770
AclWI	GGATC	3 cut(s)	498, 620, 691
AcoI	YGGCCR	1 cut(s)	645
AdeI	CACNNNGTG	1 cut(s)	664
AfaI	GTAC	2 cut(s)	625, 898
AfeI	AGCGCT	1 cut(s)	672
AfiI	CCNNNNNNNGG	6 cut(s)	420, 446, 664, 956, 984, 1167
AgsI	TTSAA	3 cut(s)	382, 778, 1151
AjiI	CACGTC	1 cut(s)	664
AjnI	CCWGG	2 cut(s)	596, 954
AluBI	AGCT	7 cut(s)	364, 378, 928, 946, 966, 994, 1136
AluI	AGCT	7 cut(s)	364, 378, 928, 946, 966, 994, 1136
Alw21I	GWGCWC	2 cut(s)	198, 996
Alw26I	GTCTC	1 cut(s)	583
Alw44I	GTGCAC	1 cut(s)	194
AlwI	GGATC	3 cut(s)	498, 620, 691
Ama87I	CYCGRG	1 cut(s)	753
Aor51HI	AGCGCT	1 cut(s)	672
AoxI	GGCC	4 cut(s)	501, 645, 975, 1158
ApaLI	GTGCAC	1 cut(s)	194
ApeKI	GCWGC	6 cut(s)	525, 668, 727, 887, 946, 1136
Asp700I	GAANNNNTTC	1 cut(s)	327
AspLEI	GCGC	2 cut(s)	652, 673
AspS9I	GGNCC	3 cut(s)	501, 550, 976
AsuC2I	CCSGG	3 cut(s)	447, 488, 711
AsuHPI	GGTGA	2 cut(s)	163, 858
AvaI	CYCGRG	1 cut(s)	753
AvaII	GGWCC	1 cut(s)	550
BaeGI	GKGCMC	2 cut(s)	198, 658
BanII	GRGCYC	2 cut(s)	597, 996
BauI	CACGAG	1 cut(s)	995
BbsI	GAAGAC	1 cut(s)	822
Bbv12I	GWGCWC	2 cut(s)	198, 996
BbvI	GCAGC	6 cut(s)	537, 680, 714, 874, 933, 1123
BccI	CCATC	3 cut(s)	19, 686, 877
BceAI	ACGGC	1 cut(s)	1021
BciT130I	CCWGG	2 cut(s)	598, 956
BciVI	GTATCC	1 cut(s)	1038
BclI	TGATCA	1 cut(s)	1108
BcnI	CCSGG	3 cut(s)	447, 488, 711
BcoDI	GTCTC	1 cut(s)	583
BfoI	RGCGCY	1 cut(s)	674
BfuI	GTATCC	1 cut(s)	1038
BglI	GCCNNNNNGGC	1 cut(s)	1042
Bme1390I	CCNGG	5 cut(s)	447, 488, 598, 711, 956
Bme18I	GGWCC	1 cut(s)	550
BmeT110I	CYCGRG	1 cut(s)	753
BmgBI	CACGTC	1 cut(s)	664
BmgT120I	GGNCC	3 cut(s)	501, 550, 976
BmiI	GGNNCC	1 cut(s)	551
BmrFI	CCNGG	5 cut(s)	447, 488, 598, 711, 956
BmrI	ACTGGG	2 cut(s)	530, 973
BmuI	ACTGGG	2 cut(s)	530, 973
BpiI	GAAGAC	1 cut(s)	822
BpmI	CTGGAG	1 cut(s)	230
BpuMI	CCSGG	3 cut(s)	447, 488, 711
BsaAI	YACGTR	1 cut(s)	193
BsaI	GGTCTC	1 cut(s)	583
BsaJI	CCNNGG	8 cut(s)	445, 596, 709, 752, 768, 789, 955, 1037
Bsc4I	CCNNNNNNNGG	6 cut(s)	420, 446, 664, 956, 984, 1167
Bse1I	ACTGG	2 cut(s)	536, 979
BseBI	CCWGG	2 cut(s)	598, 956
BseDI	CCNNGG	8 cut(s)	445, 596, 709, 752, 768, 789, 955, 1037
BseGI	GGATG	2 cut(s)	872, 1111
BseLI	CCNNNNNNNGG	6 cut(s)	420, 446, 664, 956, 984, 1167
BseMII	CTCAG	2 cut(s)	69, 594
BseNI	ACTGG	2 cut(s)	536, 979
BseRI	GAGGAG	6 cut(s)	88, 376, 379, 741, 804, 938
BseSI	GKGCMC	2 cut(s)	198, 658
BseXI	GCAGC	6 cut(s)	537, 680, 714, 874, 933, 1123
BseYI	CCCAGC	1 cut(s)	928
Bsh1236I	CGCG	5 cut(s)	591, 650, 652, 695, 770
BshFI	GGCC	4 cut(s)	503, 647, 977, 1160
BsiHKAI	GWGCWC	2 cut(s)	198, 996
BsiHKCI	CYCGRG	1 cut(s)	753
BsiSI	CCGG	4 cut(s)	447, 488, 711, 920
BslFI	GGGAC	1 cut(s)	770
BslI	CCNNNNNNNGG	6 cut(s)	420, 446, 664, 956, 984, 1167
BsmAI	GTCTC	1 cut(s)	583
BsmFI	GGGAC	1 cut(s)	770
BsmI	GAATGC	2 cut(s)	327, 561
BsnI	GGCC	4 cut(s)	503, 647, 977, 1160
Bso31I	GGTCTC	1 cut(s)	583
BsoBI	CYCGRG	1 cut(s)	753
Bsp1286I	GDGCHC	4 cut(s)	198, 597, 658, 996
Bsp143I	GATC	4 cut(s)	490, 612, 696, 1108
Bsp19I	CCATGG	1 cut(s)	789
BspANI	GGCC	4 cut(s)	503, 647, 977, 1160
BspCNI	CTCAG	2 cut(s)	68, 593
BspFNI	CGCG	5 cut(s)	591, 650, 652, 695, 770
BspLI	GGNNCC	1 cut(s)	551
BspPI	GGATC	3 cut(s)	498, 620, 691
BspTNI	GGTCTC	1 cut(s)	583
BsrI	ACTGG	2 cut(s)	536, 979
BssECI	CCNNGG	8 cut(s)	445, 596, 709, 752, 768, 789, 955, 1037
BssMI	GATC	4 cut(s)	490, 612, 696, 1108
BssSI	CACGAG	1 cut(s)	995
BssT1I	CCWWGG	1 cut(s)	789
Bst2BI	CACGAG	1 cut(s)	995
Bst2UI	CCWGG	2 cut(s)	598, 956
Bst4CI	ACNGT	4 cut(s)	822, 861, 1052, 1094
Bst6I	CTCTTC	1 cut(s)	153
BstBAI	YACGTR	1 cut(s)	193
BstC8I	GCNNGC	6 cut(s)	501, 510, 530, 593, 654, 992
BstDEI	CTNAG	2 cut(s)	55, 580
BstDSI	CCRYGG	3 cut(s)	768, 789, 1037
BstF5I	GGATG	2 cut(s)	872, 1111
BstFNI	CGCG	5 cut(s)	591, 650, 652, 695, 770
BstH2I	RGCGCY	1 cut(s)	674
BstHHI	GCGC	2 cut(s)	652, 673
BstKTI	GATC	4 cut(s)	493, 615, 699, 1111
BstMAI	GTCTC	1 cut(s)	583
BstMBI	GATC	4 cut(s)	490, 612, 696, 1108
BstMWI	GCNNNNNNNGC	6 cut(s)	505, 509, 653, 779, 925, 1042
BstNI	CCWGG	2 cut(s)	598, 956
BstSCI	CCNGG	5 cut(s)	445, 486, 596, 709, 954
BstSLI	GKGCMC	2 cut(s)	198, 658
BstUI	CGCG	5 cut(s)	591, 650, 652, 695, 770
BstV1I	GCAGC	6 cut(s)	537, 680, 714, 874, 933, 1123
BstV2I	GAAGAC	1 cut(s)	822
BstX2I	RGATCY	1 cut(s)	612
BstYI	RGATCY	1 cut(s)	612
BsuI	GTATCC	1 cut(s)	1038
BsuRI	GGCC	4 cut(s)	503, 647, 977, 1160
BtgI	CCRYGG	3 cut(s)	768, 789, 1037
BtrI	CACGTC	1 cut(s)	664
BtsCI	GGATG	2 cut(s)	872, 1111
Cac8I	GCNNGC	6 cut(s)	501, 510, 530, 593, 654, 992
CfoI	GCGC	2 cut(s)	652, 673
Cfr13I	GGNCC	3 cut(s)	501, 550, 976
Cfr42I	CCGCGG	1 cut(s)	771
CseI	GACGC	1 cut(s)	917
Csp6I	GTAC	2 cut(s)	624, 897
CviAII	CATG	2 cut(s)	564, 790
CviQI	GTAC	2 cut(s)	624, 897
DdeI	CTNAG	2 cut(s)	55, 580
DpnI	GATC	4 cut(s)	492, 614, 698, 1110
DpnII	GATC	4 cut(s)	490, 612, 696, 1108
DraIII	CACNNNGTG	1 cut(s)	664
EaeI	YGGCCR	1 cut(s)	645
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
EciI	GGCGGA	2 cut(s)	798, 1023
Ecl136II	GAGCTC	1 cut(s)	994
Eco130I	CCWWGG	1 cut(s)	789
Eco147I	AGGCCT	1 cut(s)	1160
Eco24I	GRGCYC	2 cut(s)	597, 996
Eco31I	GGTCTC	1 cut(s)	583
Eco47I	GGWCC	1 cut(s)	550
Eco47III	AGCGCT	1 cut(s)	672
Eco53kI	GAGCTC	1 cut(s)	994
Eco88I	CYCGRG	1 cut(s)	753
EcoICRI	GAGCTC	1 cut(s)	994
EcoRII	CCWGG	2 cut(s)	596, 954
EcoT14I	CCWWGG	1 cut(s)	789
EcoT38I	GRGCYC	2 cut(s)	597, 996
ErhI	CCWWGG	1 cut(s)	789
FaeI	CATG	2 cut(s)	567, 793
FaiI	YATR	9 cut(s)	260, 262, 264, 269, 338, 565, 761, 791, 1077
FaqI	GGGAC	1 cut(s)	770
FatI	CATG	2 cut(s)	563, 789
FauI	CCCGC	1 cut(s)	492
FbaI	TGATCA	1 cut(s)	1108
FokI	GGATG	2 cut(s)	859, 1118
FriOI	GRGCYC	2 cut(s)	597, 996
GlaI	GCGC	2 cut(s)	651, 672
GsaI	CCCAGC	1 cut(s)	932
GsuI	CTGGAG	1 cut(s)	230
HaeII	RGCGCY	1 cut(s)	674
HaeIII	GGCC	4 cut(s)	503, 647, 977, 1160
HapII	CCGG	4 cut(s)	447, 488, 711, 920
HgaI	GACGC	1 cut(s)	917
HhaI	GCGC	2 cut(s)	652, 673
Hin1II	CATG	2 cut(s)	567, 793
Hin6I	GCGC	2 cut(s)	650, 671
HinP1I	GCGC	2 cut(s)	650, 671
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HinfI	GANTC	8 cut(s)	43, 53, 289, 607, 714, 740, 971, 1007
HpaII	CCGG	4 cut(s)	447, 488, 711, 920
HphI	GGTGA	2 cut(s)	163, 858
Hpy166II	GTNNAC	4 cut(s)	7, 196, 343, 541
Hpy188I	TCNGA	6 cut(s)	48, 441, 495, 554, 583, 612
Hpy188III	TCNNGA	4 cut(s)	286, 464, 631, 755
Hpy8I	GTNNAC	4 cut(s)	7, 196, 343, 541
Hpy99I	CGWCG	6 cut(s)	665, 722, 826, 841, 844, 847
HpyAV	CCTTC	2 cut(s)	127, 414
HpyCH4III	ACNGT	4 cut(s)	822, 861, 1052, 1094
HpyCH4IV	ACGT	2 cut(s)	192, 663
HpyCH4V	TGCA	1 cut(s)	196
HpyF10VI	GCNNNNNNNGC	6 cut(s)	505, 509, 653, 779, 925, 1042
HpyF3I	CTNAG	2 cut(s)	55, 580
HpySE526I	ACGT	2 cut(s)	192, 663
Hsp92II	CATG	2 cut(s)	567, 793
HspAI	GCGC	2 cut(s)	650, 671
Ksp22I	TGATCA	1 cut(s)	1108
KspI	CCGCGG	1 cut(s)	771
Kzo9I	GATC	4 cut(s)	490, 612, 696, 1108
LmnI	GCTCC	4 cut(s)	811, 925, 943, 987
Lsp1109I	GCAGC	6 cut(s)	537, 680, 714, 874, 933, 1123
MaeII	ACGT	2 cut(s)	192, 663
MaeIII	GTNAC	3 cut(s)	251, 276, 855
MalI	GATC	4 cut(s)	492, 614, 698, 1110
MboI	GATC	4 cut(s)	490, 612, 696, 1108
MboII	GAAGA	8 cut(s)	56, 140, 364, 613, 616, 822, 825, 1076
MflI	RGATCY	1 cut(s)	612
MhlI	GDGCHC	4 cut(s)	198, 597, 658, 996
MluCI	AATT	1 cut(s)	138
MlyI	GAGTC	5 cut(s)	47, 52, 708, 734, 980
MmeI	TCCRAC	2 cut(s)	227, 498
MroXI	GAANNNNTTC	1 cut(s)	327
MseI	TTAA	3 cut(s)	32, 1118, 1177
MspA1I	CMGCKG	2 cut(s)	770, 1136
MspI	CCGG	4 cut(s)	447, 488, 711, 920
MspR9I	CCNGG	5 cut(s)	447, 488, 598, 711, 956
Mva1269I	GAATGC	2 cut(s)	327, 561
MvaI	CCWGG	2 cut(s)	598, 956
MvnI	CGCG	5 cut(s)	591, 650, 652, 695, 770
MwoI	GCNNNNNNNGC	6 cut(s)	505, 509, 653, 779, 925, 1042
NciI	CCSGG	3 cut(s)	447, 488, 711
NcoI	CCATGG	1 cut(s)	789
NdeII	GATC	4 cut(s)	490, 612, 696, 1108
NlaIII	CATG	2 cut(s)	567, 793
NlaIV	GGNNCC	1 cut(s)	551
NmeAIII	GCCGAG	2 cut(s)	975, 1165
NmuCI	GTSAC	2 cut(s)	276, 855
PceI	AGGCCT	1 cut(s)	1160
PcsI	WCGNNNNNNNCGW	1 cut(s)	842
PctI	GAATGC	2 cut(s)	327, 561
PdmI	GAANNNNTTC	1 cut(s)	327
PfeI	GAWTC	3 cut(s)	289, 607, 1007
PflMI	CCANNNNNTGG	1 cut(s)	664
PleI	GAGTC	5 cut(s)	47, 51, 708, 734, 979
PpsI	GAGTC	5 cut(s)	47, 51, 708, 734, 979
Ppu21I	YACGTR	1 cut(s)	193
Psp124BI	GAGCTC	1 cut(s)	996
Psp6I	CCWGG	2 cut(s)	596, 954
PspFI	CCCAGC	1 cut(s)	928
PspGI	CCWGG	2 cut(s)	596, 954
PspN4I	GGNNCC	1 cut(s)	551
PspPI	GGNCC	3 cut(s)	501, 550, 976
PsuI	RGATCY	1 cut(s)	612
PvuII	CAGCTG	1 cut(s)	1136
RsaI	GTAC	2 cut(s)	625, 898
RsaNI	GTAC	2 cut(s)	624, 897
SacI	GAGCTC	1 cut(s)	996
SacII	CCGCGG	1 cut(s)	771
SaqAI	TTAA	3 cut(s)	32, 1118, 1177
Sau3AI	GATC	4 cut(s)	490, 612, 696, 1108
Sau96I	GGNCC	3 cut(s)	501, 550, 976
SchI	GAGTC	5 cut(s)	47, 52, 708, 734, 980
ScrFI	CCNGG	5 cut(s)	447, 488, 598, 711, 956
SduI	GDGCHC	4 cut(s)	198, 597, 658, 996
SetI	ASST	9 cut(s)	195, 366, 380, 666, 930, 948, 968, 996, 1138
Sfr303I	CCGCGG	1 cut(s)	771
SgrBI	CCGCGG	1 cut(s)	771
SinI	GGWCC	1 cut(s)	550
Sse9I	AATT	1 cut(s)	138
SseBI	AGGCCT	1 cut(s)	1160
SstI	GAGCTC	1 cut(s)	996
StuI	AGGCCT	1 cut(s)	1160
StyD4I	CCNGG	5 cut(s)	445, 486, 596, 709, 954
StyI	CCWWGG	1 cut(s)	789
TaaI	ACNGT	4 cut(s)	822, 861, 1052, 1094
TaiI	ACGT	2 cut(s)	195, 666
TaqI	TCGA	6 cut(s)	101, 366, 632, 733, 743, 1059
TaqII	GACCGA	2 cut(s)	65, 264
TasI	AATT	1 cut(s)	138
TauI	GCSGC	4 cut(s)	650, 770, 773, 785
TfiI	GAWTC	3 cut(s)	289, 607, 1007
Tru1I	TTAA	3 cut(s)	32, 1118, 1177
Tru9I	TTAA	3 cut(s)	32, 1118, 1177
TseFI	GTSAC	2 cut(s)	276, 855
TseI	GCWGC	6 cut(s)	525, 668, 727, 887, 946, 1136
Tsp45I	GTSAC	2 cut(s)	276, 855
TspDTI	ATGAA	1 cut(s)	32
Van91I	CCANNNNNTGG	1 cut(s)	664
VneI	GTGCAC	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	550
XmnI	GAANNNNTTC	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.