Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004337

Physical Location & Seq

Genomic Coordinates Forward (+)

12224915 .. 12225751

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g17340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGCTGACCCAACTCACTCAGAGAACGAGTCAAGCTTTAACTCGTCCTCACCCTCTCCACCTTCCCCGTCCTCATCTGGGTTTTCCCAGTCCATACCTAACTCGGGTCTAAACCAACTACCGGTAAGGTCCGACTCGCCCGGACCGGATCAGAAGCGGGCCAAGCGAGCCAGAGAAACCAGCAGCAAGCACCCGGTTTACAGAGGGGTCCGCATGCGGACATGGGGCAAGTGGGTGTCCGAAATCCGCGAGCCCCGGAAGAAGAATCGGATCTGGCTGGGCACATTCTCGACACCTGAAATGGCCGCGCGTGCTCATGACGTGGCGGCCCTGACGATCAAAGGCAACTCGGCGATCCTCAACTTCCCCGGACTCGCCGGGTCGCTGCCCCGACCCGATTCGAACTCGCCCCGGGACATCCAAGCCGCGGCTGCCAAAGCCGCTTCCATGGAGACTCTAAATCCGCCGCCGCTGCCGCCACCACCGTTGCATTCGTCTTCGTCGTCGTCAGCATTGTCACAGTCCTCGTCATCATCCTCAATGGTGGGTACAAGTACGAGCGGGGACGCGGGAACGCCAGAGGAGCTGGGGGAGATAGTGGAGCTGCCGAGCCTGGGGACGAGTTACGAGTCGGCCGAGTCGGGGAGCGAATTCGTGTTTGCTGACTCGGTGGAGGGGTGGCTGTATCCTCCGCCGTGGTGGCACAACAGTTATTTGGAGGAGGAGTATGGGTATAATAATCTAATCAATAGTATTATTAGGGATGATCAAATGTTAATGTCTGAGCCACCAGCTGCCGAGTGTGTTGGAGTCGAGGCCTTCTTGTGGCAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

279

Amino Acids

29.96

Weight (kDa)

5.2

Isoelectric Point (pI)

65.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	65 - 115	9e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11590 AT5G25810
fragaria_vesca	FvH4_1g05820 FvH4_2g35620
malus_domestica	MD02G1060200.v1.1 MD08G1114100.v1.1 MD15G1093800.v1.1 MD15G1193700.v1.1
prunus_persica	Prupe.1G448600_v2.0.a1 Prupe.7G222700_v2.0.a1
pyrus_communis	pycom02g04920 pycom08g09510 pycom15g17340
rosa_chinensis	RchiOBHm_Chr2g0091471 RchiOBHm_Chr6g0306191
rosa_laevigata	RLG00000010815 RLG00000016227
rosa_multiflora	Rmu_sc0002407.1_g000015 Rmu_sc0003594.1_g000007
rosa_roxburghii	Rroxscaffold_2G00150040 Rroxscaffold_7G00161970
rosa_rugosa	Rorug02G0018200 Rorug06G0347800
rosa_samantha	Rh2BG062600 Rh2CG064300 Rh2DG062700 Rh6AG460400 Rh6BG441000 Rh6CG474400 Rh6DG460700
rosa_wichuraiana	Rw2G005700 Rw6G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	561
AccII	CGCG	5 cut(s)	249, 308, 310, 428, 569
AclWI	GGATC	3 cut(s)	156, 278, 349
AcoI	YGGCCR	2 cut(s)	303, 633
AcsI	RAATTY	1 cut(s)	650
AfaI	GTAC	2 cut(s)	550, 556
AfiI	CCNNNNNNNGG	7 cut(s)	78, 104, 121, 427, 614, 642, 825
AgeI	ACCGGT	1 cut(s)	121
AjiI	CACGTC	1 cut(s)	322
AjnI	CCWGG	1 cut(s)	612
AluBI	AGCT	4 cut(s)	36, 586, 604, 794
AluI	AGCT	4 cut(s)	36, 586, 604, 794
Alw21I	GWGCWC	1 cut(s)	316
Alw26I	GTCTC	1 cut(s)	446
AlwI	GGATC	3 cut(s)	156, 278, 349
Ama87I	CYCGRG	2 cut(s)	103, 411
AoxI	GGCC	5 cut(s)	159, 303, 327, 633, 816
ApeKI	GCWGC	6 cut(s)	183, 385, 431, 472, 604, 794
ApoI	RAATTY	1 cut(s)	650
AsiGI	ACCGGT	1 cut(s)	121
AspLEI	GCGC	1 cut(s)	310
AspS9I	GGNCC	5 cut(s)	129, 143, 159, 208, 328
AsuC2I	CCSGG	7 cut(s)	141, 194, 256, 369, 379, 412, 413
AsuHPI	GGTGA	1 cut(s)	42
AsuII	TTCGAA	1 cut(s)	401
AvaI	CYCGRG	2 cut(s)	103, 411
AvaII	GGWCC	3 cut(s)	129, 143, 208
BaeGI	GKGCMC	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	489
Bbv12I	GWGCWC	1 cut(s)	316
BbvI	GCAGC	6 cut(s)	195, 372, 418, 459, 591, 781
BceAI	ACGGC	1 cut(s)	679
BciT130I	CCWGG	1 cut(s)	614
BciVI	GTATCC	1 cut(s)	696
BclI	TGATCA	1 cut(s)	766
BcnI	CCSGG	7 cut(s)	141, 194, 256, 369, 379, 412, 413
BcoDI	GTCTC	1 cut(s)	446
BfuI	GTATCC	1 cut(s)	696
BglI	GCCNNNNNGGC	1 cut(s)	700
Bme1390I	CCNGG	8 cut(s)	141, 194, 256, 369, 379, 412, 413, 614
Bme18I	GGWCC	3 cut(s)	129, 143, 208
BmeT110I	CYCGRG	2 cut(s)	103, 411
BmgBI	CACGTC	1 cut(s)	322
BmgT120I	GGNCC	5 cut(s)	129, 143, 159, 208, 328
BmiI	GGNNCC	1 cut(s)	209
BmrFI	CCNGG	8 cut(s)	141, 194, 256, 369, 379, 412, 413, 614
BmrI	ACTGGG	1 cut(s)	82
BmuI	ACTGGG	1 cut(s)	82
BpiI	GAAGAC	1 cut(s)	489
Bpu14I	TTCGAA	1 cut(s)	401
BpuMI	CCSGG	7 cut(s)	141, 194, 256, 369, 379, 412, 413
BsaJI	CCNNGG	8 cut(s)	254, 367, 410, 411, 426, 447, 613, 695
BsaWI	WCCGGW	2 cut(s)	121, 145
BsaXI	ACNNNNNCTCC	4 cut(s)	710, 716, 740, 746
Bsc4I	CCNNNNNNNGG	7 cut(s)	78, 104, 121, 427, 614, 642, 825
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	614
BseDI	CCNNGG	8 cut(s)	254, 367, 410, 411, 426, 447, 613, 695
BseGI	GGATG	3 cut(s)	417, 533, 769
BseLI	CCNNNNNNNGG	7 cut(s)	78, 104, 121, 427, 614, 642, 825
BseMII	CTCAG	2 cut(s)	33, 774
BseNI	ACTGG	1 cut(s)	88
BseRI	GAGGAG	3 cut(s)	596, 734, 737
BseSI	GKGCMC	1 cut(s)	284
BseX3I	CGGCCG	1 cut(s)	633
BseXI	GCAGC	6 cut(s)	195, 372, 418, 459, 591, 781
BseYI	CCCAGC	2 cut(s)	277, 586
Bsh1236I	CGCG	5 cut(s)	249, 308, 310, 428, 569
Bsh1285I	CGRYCG	1 cut(s)	636
BshFI	GGCC	5 cut(s)	161, 305, 329, 635, 818
BshTI	ACCGGT	1 cut(s)	121
BsiEI	CGRYCG	1 cut(s)	636
BsiHKAI	GWGCWC	1 cut(s)	316
BsiHKCI	CYCGRG	2 cut(s)	103, 411
BsiSI	CCGG	8 cut(s)	122, 141, 146, 194, 256, 369, 378, 412
BslFI	GGGAC	3 cut(s)	428, 578, 631
BslI	CCNNNNNNNGG	7 cut(s)	78, 104, 121, 427, 614, 642, 825
BsmAI	GTCTC	1 cut(s)	446
BsmFI	GGGAC	3 cut(s)	428, 578, 631
BsmI	GAATGC	1 cut(s)	490
BsnI	GGCC	5 cut(s)	161, 305, 329, 635, 818
BsoBI	CYCGRG	2 cut(s)	103, 411
Bsp119I	TTCGAA	1 cut(s)	401
Bsp1286I	GDGCHC	3 cut(s)	255, 284, 316
Bsp143I	GATC	5 cut(s)	148, 270, 336, 354, 766
Bsp19I	CCATGG	1 cut(s)	447
BspANI	GGCC	5 cut(s)	161, 305, 329, 635, 818
BspCNI	CTCAG	2 cut(s)	32, 775
BspFNI	CGCG	5 cut(s)	249, 308, 310, 428, 569
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	1 cut(s)	209
BspPI	GGATC	3 cut(s)	156, 278, 349
BspT104I	TTCGAA	1 cut(s)	401
BsrBI	CCGCTC	1 cut(s)	561
BsrFI	RCCGGY	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	88
BssAI	RCCGGY	1 cut(s)	121
BssECI	CCNNGG	8 cut(s)	254, 367, 410, 411, 426, 447, 613, 695
BssMI	GATC	5 cut(s)	148, 270, 336, 354, 766
BssT1I	CCWWGG	1 cut(s)	447
Bst2UI	CCWGG	1 cut(s)	614
Bst4CI	ACNGT	3 cut(s)	486, 522, 710
BstBI	TTCGAA	1 cut(s)	401
BstC8I	GCNNGC	6 cut(s)	159, 168, 188, 215, 251, 312
BstDEI	CTNAG	2 cut(s)	19, 783
BstDSI	CCRYGG	3 cut(s)	426, 447, 695
BstF5I	GGATG	3 cut(s)	417, 533, 769
BstFNI	CGCG	5 cut(s)	249, 308, 310, 428, 569
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	5 cut(s)	151, 273, 339, 357, 769
BstMAI	GTCTC	1 cut(s)	446
BstMBI	GATC	5 cut(s)	148, 270, 336, 354, 766
BstMCI	CGRYCG	1 cut(s)	636
BstNI	CCWGG	1 cut(s)	614
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	8 cut(s)	139, 192, 254, 367, 377, 410, 411, 612
BstSLI	GKGCMC	1 cut(s)	284
BstUI	CGCG	5 cut(s)	249, 308, 310, 428, 569
BstV1I	GCAGC	6 cut(s)	195, 372, 418, 459, 591, 781
BstV2I	GAAGAC	1 cut(s)	489
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
BstZI	CGGCCG	1 cut(s)	633
BsuI	GTATCC	1 cut(s)	696
BsuRI	GGCC	5 cut(s)	161, 305, 329, 635, 818
BtgI	CCRYGG	3 cut(s)	426, 447, 695
BtrI	CACGTC	1 cut(s)	322
BtsCI	GGATG	3 cut(s)	417, 533, 769
Cac8I	GCNNGC	6 cut(s)	159, 168, 188, 215, 251, 312
CciI	TCATGA	1 cut(s)	316
CfoI	GCGC	1 cut(s)	310
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	5 cut(s)	129, 143, 159, 208, 328
Cfr42I	CCGCGG	1 cut(s)	429
Cfr9I	CCCGGG	1 cut(s)	411
CpoI	CGGWCCG	1 cut(s)	143
CseI	GACGC	1 cut(s)	575
Csp6I	GTAC	2 cut(s)	549, 555
CspAI	ACCGGT	1 cut(s)	121
CspCI	CAANNNNNGTGG	2 cut(s)	468, 503
CspI	CGGWCCG	1 cut(s)	143
CviAII	CATG	4 cut(s)	214, 222, 317, 448
CviQI	GTAC	2 cut(s)	549, 555
DdeI	CTNAG	2 cut(s)	19, 783
DpnI	GATC	5 cut(s)	150, 272, 338, 356, 768
DpnII	GATC	5 cut(s)	148, 270, 336, 354, 766
EaeI	YGGCCR	2 cut(s)	303, 633
EagI	CGGCCG	1 cut(s)	633
EciI	GGCGGA	2 cut(s)	453, 681
EclXI	CGGCCG	1 cut(s)	633
Eco130I	CCWWGG	1 cut(s)	447
Eco147I	AGGCCT	1 cut(s)	818
Eco24I	GRGCYC	1 cut(s)	255
Eco47I	GGWCC	3 cut(s)	129, 143, 208
Eco52I	CGGCCG	1 cut(s)	633
Eco88I	CYCGRG	2 cut(s)	103, 411
EcoRI	GAATTC	1 cut(s)	650
EcoRII	CCWGG	1 cut(s)	612
EcoT14I	CCWWGG	1 cut(s)	447
EcoT38I	GRGCYC	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	4 cut(s)	217, 225, 320, 451
FaiI	YATR	7 cut(s)	95, 215, 223, 318, 449, 729, 735
FaqI	GGGAC	3 cut(s)	428, 578, 631
FatI	CATG	4 cut(s)	213, 221, 316, 447
FauI	CCCGC	3 cut(s)	150, 554, 562
FbaI	TGATCA	1 cut(s)	766
FokI	GGATG	3 cut(s)	404, 520, 776
FriOI	GRGCYC	1 cut(s)	255
GlaI	GCGC	1 cut(s)	309
GsaI	CCCAGC	2 cut(s)	281, 590
HaeIII	GGCC	5 cut(s)	161, 305, 329, 635, 818
HapII	CCGG	8 cut(s)	122, 141, 146, 194, 256, 369, 378, 412
HgaI	GACGC	1 cut(s)	575
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	4 cut(s)	217, 225, 320, 451
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HindIII	AAGCTT	1 cut(s)	34
HpaII	CCGG	8 cut(s)	122, 141, 146, 194, 256, 369, 378, 412
HphI	GGTGA	1 cut(s)	42
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	6 cut(s)	22, 133, 153, 241, 270, 784
Hpy188III	TCNNGA	2 cut(s)	289, 317
Hpy8I	GTNNAC	1 cut(s)	199
Hpy99I	CGWCG	2 cut(s)	505, 508
HpyAV	CCTTC	2 cut(s)	72, 829
HpyCH4III	ACNGT	3 cut(s)	486, 522, 710
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	1 cut(s)	490
HpyF3I	CTNAG	2 cut(s)	19, 783
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	4 cut(s)	217, 225, 320, 451
HspAI	GCGC	1 cut(s)	308
Ksp22I	TGATCA	1 cut(s)	766
KspI	CCGCGG	1 cut(s)	429
Kzo9I	GATC	5 cut(s)	148, 270, 336, 354, 766
LmnI	GCTCC	3 cut(s)	583, 601, 645
Lsp1109I	GCAGC	6 cut(s)	195, 372, 418, 459, 591, 781
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	2 cut(s)	516, 623
MalI	GATC	5 cut(s)	150, 272, 338, 356, 768
MbiI	CCGCTC	1 cut(s)	561
MboI	GATC	5 cut(s)	148, 270, 336, 354, 766
MboII	GAAGA	3 cut(s)	271, 274, 489
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	3 cut(s)	255, 284, 316
MluCI	AATT	1 cut(s)	650
MlyI	GAGTC	8 cut(s)	38, 128, 366, 448, 638, 647, 659, 819
MmeI	TCCRAC	2 cut(s)	156, 787
MseI	TTAA	3 cut(s)	39, 776, 835
MspA1I	CMGCKG	3 cut(s)	428, 472, 794
MspI	CCGG	8 cut(s)	122, 141, 146, 194, 256, 369, 378, 412
MspR9I	CCNGG	8 cut(s)	141, 194, 256, 369, 379, 412, 413, 614
Mva1269I	GAATGC	1 cut(s)	490
MvaI	CCWGG	1 cut(s)	614
MvnI	CGCG	5 cut(s)	249, 308, 310, 428, 569
NciI	CCSGG	7 cut(s)	141, 194, 256, 369, 379, 412, 413
NcoI	CCATGG	1 cut(s)	447
NdeII	GATC	5 cut(s)	148, 270, 336, 354, 766
NlaIII	CATG	4 cut(s)	217, 225, 320, 451
NlaIV	GGNNCC	1 cut(s)	209
NmeAIII	GCCGAG	4 cut(s)	329, 633, 661, 823
NmuCI	GTSAC	1 cut(s)	516
NspI	RCATGY	1 cut(s)	217
NspV	TTCGAA	1 cut(s)	401
PaeI	GCATGC	1 cut(s)	217
PagI	TCATGA	1 cut(s)	316
PceI	AGGCCT	1 cut(s)	818
PcsI	WCGNNNNNNNCGW	2 cut(s)	500, 633
PctI	GAATGC	1 cut(s)	490
PfeI	GAWTC	2 cut(s)	265, 398
PinAI	ACCGGT	1 cut(s)	121
PleI	GAGTC	8 cut(s)	37, 128, 366, 448, 637, 646, 659, 818
PpsI	GAGTC	8 cut(s)	37, 128, 366, 448, 637, 646, 659, 818
Psp6I	CCWGG	1 cut(s)	612
PspFI	CCCAGC	2 cut(s)	277, 586
PspGI	CCWGG	1 cut(s)	612
PspN4I	GGNNCC	1 cut(s)	209
PspPI	GGNCC	5 cut(s)	129, 143, 159, 208, 328
PsuI	RGATCY	1 cut(s)	270
PvuII	CAGCTG	1 cut(s)	794
RsaI	GTAC	2 cut(s)	550, 556
RsaNI	GTAC	2 cut(s)	549, 555
Rsr2I	CGGWCCG	1 cut(s)	143
RsrII	CGGWCCG	1 cut(s)	143
SacII	CCGCGG	1 cut(s)	429
SaqAI	TTAA	3 cut(s)	39, 776, 835
Sau3AI	GATC	5 cut(s)	148, 270, 336, 354, 766
Sau96I	GGNCC	5 cut(s)	129, 143, 159, 208, 328
SchI	GAGTC	8 cut(s)	38, 128, 366, 448, 638, 647, 659, 819
ScrFI	CCNGG	8 cut(s)	141, 194, 256, 369, 379, 412, 413, 614
SduI	GDGCHC	3 cut(s)	255, 284, 316
SetI	ASST	9 cut(s)	38, 64, 100, 131, 298, 324, 588, 606, 796
Sfr303I	CCGCGG	1 cut(s)	429
SfuI	TTCGAA	1 cut(s)	401
SgrBI	CCGCGG	1 cut(s)	429
SinI	GGWCC	3 cut(s)	129, 143, 208
SmaI	CCCGGG	1 cut(s)	413
SphI	GCATGC	1 cut(s)	217
Sse9I	AATT	1 cut(s)	650
SseBI	AGGCCT	1 cut(s)	818
StuI	AGGCCT	1 cut(s)	818
StyD4I	CCNGG	8 cut(s)	139, 192, 254, 367, 377, 410, 411, 612
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	3 cut(s)	486, 522, 710
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	3 cut(s)	290, 401, 813
TasI	AATT	1 cut(s)	650
TauI	GCSGC	8 cut(s)	308, 329, 428, 431, 443, 469, 472, 478
TfiI	GAWTC	2 cut(s)	265, 398
Tru1I	TTAA	3 cut(s)	39, 776, 835
Tru9I	TTAA	3 cut(s)	39, 776, 835
TseFI	GTSAC	1 cut(s)	516
TseI	GCWGC	6 cut(s)	183, 385, 431, 472, 604, 794
Tsp45I	GTSAC	1 cut(s)	516
TspMI	CCCGGG	1 cut(s)	411
VpaK11BI	GGWCC	3 cut(s)	129, 143, 208
XapI	RAATTY	1 cut(s)	650
XceI	RCATGY	1 cut(s)	217
XmaI	CCCGGG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.