Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004337

Physical Location & Seq

Genomic Coordinates Reverse (-)

7827374 .. 7828160

Gene Structure 787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g09510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAGCGCTGATCAACCCCAAAGTTCAGAAACTGAGAGCACCTCCAACTCATCCACTTCCGCATCGCCTCCTTCCTCGCCTTCCTCACTCCAAAACCAAAACCCACAAAAACCCAGCTCGCCAATTCACCAAGAAACCGACTTACCCACCAAAAACAATGCCAAACGGGTCAGAGACTCCAGCAAGCACCCGGTTTATCGTGGGGTCCGAATGAGGAACTGGGGCAAATGGGTATCCGAAATCCGCGAGCCCCGCAAGAAATCTCGCATTTGGCTCGGCACCTTCCCGACTCCTGAAATGGCCGCCCGGGCCCACGACGTCGCCGCCTTGAGTATCAAGGGCAACTCGGCGATTCTCAACTTCCCGGAGCTCTCCAACTCGCTGCCTCGCCCGGTTTCTCTCGCCCCCCGCGACGTCCAGGCCGCCGCCACCAAAGCCGCCCAAATGCATCAGTTCGACTCCATCCGTTCAATGTCGCCGTCCATACTCTCCTCTTCCTCCTCCTCGTCGCTGTCCTCGCTCGTCTCGGCTATAGACAACCTGTCGACCGAGTCGGAGGAGCTGAGCGAGATCGTCGATCGGAGGACCAATGGGTTTATCCGCCGCCGTGGCTGCAGCGCGTTGAGGAGTTCGAATGCGGTGAGTTGGGGGCGGCGAGTTCAGTTGGGCTTGAGGGTTTGTTATGGGACTATAATAATTAGCAGTTTCTATCTGCTAATTAGATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

243

Amino Acids

26.54

Weight (kDa)

10.26

Isoelectric Point (pI)

75.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	64 - 114	1.8e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11590 AT5G25810
fragaria_vesca	FvH4_1g05820 FvH4_2g35620
malus_domestica	MD02G1060200.v1.1 MD08G1114100.v1.1 MD15G1093800.v1.1 MD15G1193700.v1.1
prunus_persica	Prupe.1G448600_v2.0.a1 Prupe.7G222700_v2.0.a1
pyrus_communis	pycom02g04920 pycom08g09510 pycom15g17340
rosa_chinensis	RchiOBHm_Chr2g0091471 RchiOBHm_Chr6g0306191
rosa_laevigata	RLG00000010815 RLG00000016227
rosa_multiflora	Rmu_sc0002407.1_g000015 Rmu_sc0003594.1_g000007
rosa_roxburghii	Rroxscaffold_2G00150040 Rroxscaffold_7G00161970
rosa_rugosa	Rorug02G0018200 Rorug06G0347800
rosa_samantha	Rh2BG062600 Rh2CG064300 Rh2DG062700 Rh6AG460400 Rh6BG441000 Rh6CG474400 Rh6DG460700
rosa_wichuraiana	Rw2G005700 Rw6G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	321, 417
AccB1I	GGYRCC	1 cut(s)	278
AccI	GTMKAC	1 cut(s)	545
AccII	CGCG	3 cut(s)	246, 411, 620
AcoI	YGGCCR	1 cut(s)	300
AcyI	GRCGYC	2 cut(s)	318, 414
AfeI	AGCGCT	1 cut(s)	7
AgsI	TTSAA	1 cut(s)	471
AhdI	GACNNNNNGTC	1 cut(s)	541
AjnI	CCWGG	1 cut(s)	417
AluBI	AGCT	3 cut(s)	117, 370, 562
AluI	AGCT	3 cut(s)	117, 370, 562
Alw21I	GWGCWC	2 cut(s)	41, 372
Alw26I	GTCTC	2 cut(s)	168, 529
AlwNI	CAGNNNCTG	1 cut(s)	32
Ama87I	CYCGRG	1 cut(s)	306
Aor51HI	AGCGCT	1 cut(s)	7
AoxI	GGCC	3 cut(s)	300, 309, 420
ApaI	GGGCCC	1 cut(s)	313
ApeKI	GCWGC	3 cut(s)	382, 612, 615
AspLEI	GCGC	2 cut(s)	8, 620
AspS9I	GGNCC	4 cut(s)	205, 309, 310, 585
AsuC2I	CCSGG	5 cut(s)	191, 307, 308, 365, 392
AsuHPI	GGTGA	2 cut(s)	119, 652
AsuII	TTCGAA	1 cut(s)	632
AvaI	CYCGRG	1 cut(s)	306
AvaII	GGWCC	2 cut(s)	205, 585
BaeGI	GKGCMC	1 cut(s)	313
BanI	GGYRCC	1 cut(s)	278
BanII	GRGCYC	3 cut(s)	252, 313, 372
Bbv12I	GWGCWC	2 cut(s)	41, 372
BbvI	GCAGC	3 cut(s)	369, 599, 627
BccI	CCATC	1 cut(s)	470
BceAI	ACGGC	2 cut(s)	463, 591
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BciT130I	CCWGG	1 cut(s)	419
BciVI	GTATCC	1 cut(s)	244
BclI	TGATCA	1 cut(s)	10
BcnI	CCSGG	5 cut(s)	191, 307, 308, 365, 392
BcoDI	GTCTC	2 cut(s)	168, 529
BfmI	CTRYAG	2 cut(s)	531, 613
BfoI	RGCGCY	1 cut(s)	9
BfuI	GTATCC	1 cut(s)	244
BglI	GCCNNNNNGGC	2 cut(s)	308, 609
BlpI	GCTNAGC	1 cut(s)	563
Bme1390I	CCNGG	6 cut(s)	191, 307, 308, 365, 392, 419
Bme18I	GGWCC	2 cut(s)	205, 585
BmeRI	GACNNNNNGTC	1 cut(s)	541
BmeT110I	CYCGRG	1 cut(s)	306
BmgT120I	GGNCC	4 cut(s)	205, 309, 310, 585
BmiI	GGNNCC	3 cut(s)	206, 280, 311
BmrFI	CCNGG	6 cut(s)	191, 307, 308, 365, 392, 419
BmrI	ACTGGG	1 cut(s)	229
BmsI	GCATC	2 cut(s)	71, 457
BmuI	ACTGGG	1 cut(s)	229
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
BpmI	CTGGAG	1 cut(s)	163
Bpu1102I	GCTNAGC	1 cut(s)	563
Bpu14I	TTCGAA	1 cut(s)	632
BpuEI	CTTGAG	2 cut(s)	349, 691
BpuMI	CCSGG	5 cut(s)	191, 307, 308, 365, 392
BsaHI	GRCGYC	2 cut(s)	318, 414
BsaJI	CCNNGG	2 cut(s)	306, 607
Bse1I	ACTGG	1 cut(s)	224
BseBI	CCWGG	1 cut(s)	419
BseDI	CCNNGG	2 cut(s)	306, 607
BseGI	GGATG	2 cut(s)	50, 462
BseMII	CTCAG	2 cut(s)	24, 554
BseNI	ACTGG	1 cut(s)	224
BseRI	GAGGAG	5 cut(s)	481, 490, 493, 572, 640
BseSI	GKGCMC	1 cut(s)	313
BseXI	GCAGC	3 cut(s)	369, 599, 627
BseYI	CCCAGC	1 cut(s)	113
Bsh1236I	CGCG	3 cut(s)	246, 411, 620
Bsh1285I	CGRYCG	2 cut(s)	549, 580
BshFI	GGCC	3 cut(s)	302, 311, 422
BshNI	GGYRCC	1 cut(s)	278
BsiEI	CGRYCG	2 cut(s)	549, 580
BsiHKAI	GWGCWC	2 cut(s)	41, 372
BsiHKCI	CYCGRG	1 cut(s)	306
BsiSI	CCGG	4 cut(s)	191, 307, 365, 392
BslFI	GGGAC	1 cut(s)	700
BsmAI	GTCTC	2 cut(s)	168, 529
BsmBI	CGTCTC	1 cut(s)	529
BsmFI	GGGAC	1 cut(s)	700
BsmI	GAATGC	1 cut(s)	640
BsnI	GGCC	3 cut(s)	302, 311, 422
BsoBI	CYCGRG	1 cut(s)	306
Bsp119I	TTCGAA	1 cut(s)	632
Bsp120I	GGGCCC	1 cut(s)	309
Bsp1286I	GDGCHC	4 cut(s)	41, 252, 313, 372
Bsp143I	GATC	3 cut(s)	10, 570, 577
Bsp1720I	GCTNAGC	1 cut(s)	563
BspANI	GGCC	3 cut(s)	302, 311, 422
BspCNI	CTCAG	2 cut(s)	25, 555
BspFNI	CGCG	3 cut(s)	246, 411, 620
BspLI	GGNNCC	3 cut(s)	206, 280, 311
BspMAI	CTGCAG	1 cut(s)	617
BspT104I	TTCGAA	1 cut(s)	632
BspT107I	GGYRCC	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	224
BssECI	CCNNGG	2 cut(s)	306, 607
BssMI	GATC	3 cut(s)	10, 570, 577
BssNI	GRCGYC	2 cut(s)	318, 414
Bst2UI	CCWGG	1 cut(s)	419
Bst6I	CTCTTC	1 cut(s)	499
BstACI	GRCGYC	2 cut(s)	318, 414
BstBI	TTCGAA	1 cut(s)	632
BstC8I	GCNNGC	3 cut(s)	119, 185, 248
BstDEI	CTNAG	2 cut(s)	33, 563
BstDSI	CCRYGG	1 cut(s)	607
BstF5I	GGATG	2 cut(s)	50, 462
BstFNI	CGCG	3 cut(s)	246, 411, 620
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	2 cut(s)	8, 620
BstKTI	GATC	3 cut(s)	13, 573, 580
BstMAI	GTCTC	2 cut(s)	168, 529
BstMBI	GATC	3 cut(s)	10, 570, 577
BstMCI	CGRYCG	2 cut(s)	549, 580
BstMWI	GCNNNNNNNGC	6 cut(s)	252, 308, 434, 517, 609, 612
BstNI	CCWGG	1 cut(s)	419
BstSCI	CCNGG	6 cut(s)	189, 305, 306, 363, 390, 417
BstSFI	CTRYAG	2 cut(s)	531, 613
BstSLI	GKGCMC	1 cut(s)	313
BstUI	CGCG	3 cut(s)	246, 411, 620
BstV1I	GCAGC	3 cut(s)	369, 599, 627
BsuI	GTATCC	1 cut(s)	244
BsuRI	GGCC	3 cut(s)	302, 311, 422
BtgI	CCRYGG	1 cut(s)	607
BtgZI	GCGATG	1 cut(s)	48
BtsCI	GGATG	2 cut(s)	50, 462
Cac8I	GCNNGC	3 cut(s)	119, 185, 248
CaiI	CAGNNNCTG	1 cut(s)	32
CfoI	GCGC	2 cut(s)	8, 620
Cfr13I	GGNCC	4 cut(s)	205, 309, 310, 585
Cfr9I	CCCGGG	1 cut(s)	306
DdeI	CTNAG	2 cut(s)	33, 563
DpnI	GATC	3 cut(s)	12, 572, 579
DpnII	GATC	3 cut(s)	10, 570, 577
DriI	GACNNNNNGTC	1 cut(s)	541
EaeI	YGGCCR	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	499
Eam1105I	GACNNNNNGTC	1 cut(s)	541
EarI	CTCTTC	1 cut(s)	499
EciI	GGCGGA	1 cut(s)	590
Ecl136II	GAGCTC	1 cut(s)	370
Eco24I	GRGCYC	3 cut(s)	252, 313, 372
Eco47I	GGWCC	2 cut(s)	205, 585
Eco47III	AGCGCT	1 cut(s)	7
Eco53kI	GAGCTC	1 cut(s)	370
Eco88I	CYCGRG	1 cut(s)	306
EcoICRI	GAGCTC	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	417
EcoT22I	ATGCAT	1 cut(s)	450
EcoT38I	GRGCYC	3 cut(s)	252, 313, 372
Esp3I	CGTCTC	1 cut(s)	529
FaiI	YATR	4 cut(s)	485, 533, 684, 692
FaqI	GGGAC	1 cut(s)	700
FauI	CCCGC	2 cut(s)	260, 416
FbaI	TGATCA	1 cut(s)	10
FblI	GTMKAC	1 cut(s)	545
FokI	GGATG	2 cut(s)	37, 449
FriOI	GRGCYC	3 cut(s)	252, 313, 372
GlaI	GCGC	2 cut(s)	7, 619
GsaI	CCCAGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	163
HaeII	RGCGCY	1 cut(s)	9
HaeIII	GGCC	3 cut(s)	302, 311, 422
HapII	CCGG	4 cut(s)	191, 307, 365, 392
HhaI	GCGC	2 cut(s)	8, 620
Hin1I	GRCGYC	2 cut(s)	318, 414
Hin6I	GCGC	2 cut(s)	6, 618
HinP1I	GCGC	2 cut(s)	6, 618
HincII	GTYRAC	1 cut(s)	546
HindII	GTYRAC	1 cut(s)	546
HinfI	GANTC	5 cut(s)	176, 289, 352, 458, 551
HpaII	CCGG	4 cut(s)	191, 307, 365, 392
HphI	GGTGA	2 cut(s)	119, 652
Hpy166II	GTNNAC	1 cut(s)	546
Hpy188I	TCNGA	6 cut(s)	28, 173, 209, 238, 556, 582
Hpy188III	TCNNGA	2 cut(s)	286, 293
Hpy8I	GTNNAC	1 cut(s)	546
Hpy99I	CGWCG	5 cut(s)	320, 323, 416, 511, 578
HpyAV	CCTTC	3 cut(s)	81, 90, 292
HpyCH4IV	ACGT	2 cut(s)	318, 414
HpyCH4V	TGCA	2 cut(s)	448, 615
HpyF10VI	GCNNNNNNNGC	6 cut(s)	252, 308, 434, 517, 609, 612
HpyF3I	CTNAG	2 cut(s)	33, 563
HpySE526I	ACGT	2 cut(s)	318, 414
Hsp92I	GRCGYC	2 cut(s)	318, 414
HspAI	GCGC	2 cut(s)	6, 618
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	3 cut(s)	10, 570, 577
LmnI	GCTCC	2 cut(s)	367, 559
Lsp1109I	GCAGC	3 cut(s)	369, 599, 627
LweI	GCATC	2 cut(s)	71, 457
MaeII	ACGT	2 cut(s)	318, 414
MalI	GATC	3 cut(s)	12, 572, 579
MboI	GATC	3 cut(s)	10, 570, 577
MboII	GAAGA	1 cut(s)	486
MhlI	GDGCHC	4 cut(s)	41, 252, 313, 372
MluCI	AATT	3 cut(s)	123, 696, 717
MlyI	GAGTC	4 cut(s)	170, 283, 452, 560
MmeI	TCCRAC	3 cut(s)	69, 399, 534
Mph1103I	ATGCAT	1 cut(s)	450
MseI	TTAA	1 cut(s)	727
MspI	CCGG	4 cut(s)	191, 307, 365, 392
MspR9I	CCNGG	6 cut(s)	191, 307, 308, 365, 392, 419
Mva1269I	GAATGC	1 cut(s)	640
MvaI	CCWGG	1 cut(s)	419
MvnI	CGCG	3 cut(s)	246, 411, 620
MwoI	GCNNNNNNNGC	6 cut(s)	252, 308, 434, 517, 609, 612
NciI	CCSGG	5 cut(s)	191, 307, 308, 365, 392
NdeII	GATC	3 cut(s)	10, 570, 577
NlaIV	GGNNCC	3 cut(s)	206, 280, 311
NmeAIII	GCCGAG	3 cut(s)	255, 326, 506
NsiI	ATGCAT	1 cut(s)	450
NspV	TTCGAA	1 cut(s)	632
PcsI	WCGNNNNNNNCGW	2 cut(s)	205, 408
PctI	GAATGC	1 cut(s)	640
PfeI	GAWTC	1 cut(s)	352
PflFI	GACNNNGTC	1 cut(s)	550
PfoI	TCCNGGA	1 cut(s)	363
Ple19I	CGATCG	1 cut(s)	580
PleI	GAGTC	4 cut(s)	170, 283, 452, 559
PpsI	GAGTC	4 cut(s)	170, 283, 452, 559
Psp124BI	GAGCTC	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	417
PspFI	CCCAGC	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	417
PspN4I	GGNNCC	3 cut(s)	206, 280, 311
PspOMI	GGGCCC	1 cut(s)	309
PspPI	GGNCC	4 cut(s)	205, 309, 310, 585
PstI	CTGCAG	1 cut(s)	617
PstNI	CAGNNNCTG	1 cut(s)	32
PsyI	GACNNNGTC	1 cut(s)	550
PvuI	CGATCG	1 cut(s)	580
SacI	GAGCTC	1 cut(s)	372
SalI	GTCGAC	1 cut(s)	544
SaqAI	TTAA	1 cut(s)	727
Sau3AI	GATC	3 cut(s)	10, 570, 577
Sau96I	GGNCC	4 cut(s)	205, 309, 310, 585
SchI	GAGTC	4 cut(s)	170, 283, 452, 560
ScrFI	CCNGG	6 cut(s)	191, 307, 308, 365, 392, 419
SduI	GDGCHC	4 cut(s)	41, 252, 313, 372
SetI	ASST	8 cut(s)	44, 119, 284, 321, 372, 417, 543, 564
SfaNI	GCATC	2 cut(s)	71, 457
SfcI	CTRYAG	2 cut(s)	531, 613
SfiI	GGCCNNNNNGGCC	1 cut(s)	308
SfuI	TTCGAA	1 cut(s)	632
SinI	GGWCC	2 cut(s)	205, 585
SmaI	CCCGGG	1 cut(s)	308
SmlI	CTYRAG	2 cut(s)	328, 670
SmoI	CTYRAG	2 cut(s)	328, 670
SrfI	GCCCGGGC	1 cut(s)	308
Sse9I	AATT	3 cut(s)	123, 696, 717
SstI	GAGCTC	1 cut(s)	372
StyD4I	CCNGG	6 cut(s)	189, 305, 306, 363, 390, 417
TaiI	ACGT	2 cut(s)	321, 417
TaqI	TCGA	4 cut(s)	456, 545, 576, 632
TaqII	GACCGA	1 cut(s)	563
TasI	AATT	3 cut(s)	123, 696, 717
TauI	GCSGC	7 cut(s)	305, 326, 425, 428, 440, 606, 655
TfiI	GAWTC	1 cut(s)	352
Tru1I	TTAA	1 cut(s)	727
Tru9I	TTAA	1 cut(s)	727
TseI	GCWGC	3 cut(s)	382, 612, 615
TspGWI	ACGGA	1 cut(s)	455
TspMI	CCCGGG	1 cut(s)	306
Tth111I	GACNNNGTC	1 cut(s)	550
VpaK11BI	GGWCC	2 cut(s)	205, 585
XmaI	CCCGGG	1 cut(s)	306
XmiI	GTMKAC	1 cut(s)	545
ZraI	GACGTC	2 cut(s)	319, 415
Zsp2I	ATGCAT	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.