Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004337

Physical Location & Seq

Genomic Coordinates Reverse (-)

87500613 .. 87502825

Gene Structure 2213 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00150040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGACCACTGACCCGAGCCACTCGGAGACCACCACCACCGAGTCGACCAGCTTCAACTCGTCTTCATTCTCCTCCTCCGCCTCTCCGCGCACCCCGGGTCAGAATAACCCGTCACCCGGAGACTCCAACCCGAACGAGAAGCGGGTCAGCAGCAAACGGGCCAGAGAGAGCAGCAGCAAGCACCCGGTTTACAGAGGGGTCCGAATGCGGGCGTGGGGCAAATGGGTATCCGAAATCCGCGAGCCCAGGAAGAAGAATCGGATCTGGCTCGGCACCTTCTCCACCCCCGAAATGGCGGCGCGTGCCCACGACGTCGCCGCCTTGACCATCAAAGGCGACTCCGCCATCCTCAACTTCCCAGCCTTATCCGGGTCATTGCCCCGACCCGACTCCAACTCGCCCCGAGACATCCAAGCCGCCGCCGCCAAAGCCGCCTCCATGGACCCATACCCATCACCATCACCATCACCAACGCCGCCGCCGCCGTCATCGACATTGTCGCAATCGTCATCCTCGTCGTCAATGGCCGACGCCGGAACGCCGGAGGAGCTGGGGGAGATAGTGGAGCTGCCGAGCCTGGGGACGAGCTACGAGTCGGCCGAGTCGGAGTTCGTGTTCGAGGACTCGGTGGAGGGGTGGCTCTACCCACCACAGCCGTGGTGGCAAAGTGGTTATTTTGGAGAAGAGTATGGGTATATTAGGAATTACGATATGATAATGGCACCGGAGCCAGCCTTGTGTGTTGAGGACCTGTTGTGGCAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

255

Amino Acids

27.81

Weight (kDa)

5.01

Isoelectric Point (pI)

68.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	62 - 112	1.1e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11590 AT5G25810
fragaria_vesca	FvH4_1g05820 FvH4_2g35620
malus_domestica	MD02G1060200.v1.1 MD08G1114100.v1.1 MD15G1093800.v1.1 MD15G1193700.v1.1
prunus_persica	Prupe.1G448600_v2.0.a1 Prupe.7G222700_v2.0.a1
pyrus_communis	pycom02g04920 pycom08g09510 pycom15g17340
rosa_chinensis	RchiOBHm_Chr2g0091471 RchiOBHm_Chr6g0306191
rosa_laevigata	RLG00000010815 RLG00000016227
rosa_multiflora	Rmu_sc0002407.1_g000015 Rmu_sc0003594.1_g000007
rosa_roxburghii	Rroxscaffold_2G00150040 Rroxscaffold_7G00161970
rosa_rugosa	Rorug02G0018200 Rorug06G0347800
rosa_samantha	Rh2BG062600 Rh2CG064300 Rh2DG062700 Rh6AG460400 Rh6BG441000 Rh6CG474400 Rh6DG460700
rosa_wichuraiana	Rw2G005700 Rw6G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	315
AccB1I	GGYRCC	2 cut(s)	272, 721
AccI	GTMKAC	1 cut(s)	44
AccII	CGCG	3 cut(s)	88, 240, 301
AclWI	GGATC	1 cut(s)	269
AcoI	YGGCCR	2 cut(s)	525, 597
AcyI	GRCGYC	2 cut(s)	312, 531
AfiI	CCNNNNNNNGG	5 cut(s)	116, 208, 292, 369, 578
AgsI	TTSAA	1 cut(s)	55
AjnI	CCWGG	2 cut(s)	245, 576
AleI	CACNNNNGTG	1 cut(s)	655
AloI	GAACNNNNNNTCC	2 cut(s)	599, 631
AluBI	AGCT	4 cut(s)	51, 550, 568, 588
AluI	AGCT	4 cut(s)	51, 550, 568, 588
Alw26I	GTCTC	3 cut(s)	20, 114, 399
AlwI	GGATC	1 cut(s)	269
Ama87I	CYCGRG	3 cut(s)	13, 94, 402
AoxI	GGCC	3 cut(s)	159, 525, 597
ApeKI	GCWGC	4 cut(s)	150, 171, 174, 568
AspLEI	GCGC	2 cut(s)	90, 301
AspS9I	GGNCC	4 cut(s)	159, 199, 442, 748
AsuC2I	CCSGG	5 cut(s)	95, 96, 117, 185, 370
AsuHPI	GGTGA	4 cut(s)	105, 447, 453, 459
AvaI	CYCGRG	3 cut(s)	13, 94, 402
AvaII	GGWCC	3 cut(s)	199, 442, 748
BaeGI	GKGCMC	1 cut(s)	307
BanI	GGYRCC	2 cut(s)	272, 721
BanII	GRGCYC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	54
BbvI	GCAGC	4 cut(s)	162, 183, 186, 555
BccI	CCATC	5 cut(s)	335, 353, 460, 466, 472
BceAI	ACGGC	2 cut(s)	469, 640
BciT130I	CCWGG	2 cut(s)	247, 578
BciVI	GTATCC	1 cut(s)	238
BcnI	CCSGG	5 cut(s)	95, 96, 117, 185, 370
BcoDI	GTCTC	3 cut(s)	20, 114, 399
BfuI	GTATCC	1 cut(s)	238
BglI	GCCNNNNNGGC	1 cut(s)	661
Bme1390I	CCNGG	7 cut(s)	95, 96, 117, 185, 247, 370, 578
Bme18I	GGWCC	3 cut(s)	199, 442, 748
BmeT110I	CYCGRG	3 cut(s)	13, 94, 402
BmgT120I	GGNCC	4 cut(s)	159, 199, 442, 748
BmiI	GGNNCC	5 cut(s)	200, 274, 444, 723, 729
BmrFI	CCNGG	7 cut(s)	95, 96, 117, 185, 247, 370, 578
BpiI	GAAGAC	1 cut(s)	54
BpuMI	CCSGG	5 cut(s)	95, 96, 117, 185, 370
BsaHI	GRCGYC	2 cut(s)	312, 531
BsaI	GGTCTC	1 cut(s)	20
BsaJI	CCNNGG	6 cut(s)	93, 94, 245, 438, 577, 656
BsaWI	WCCGGW	1 cut(s)	724
BsaXI	ACNNNNNCTCC	2 cut(s)	599, 629
Bsc4I	CCNNNNNNNGG	5 cut(s)	116, 208, 292, 369, 578
Bse3DI	GCAATG	1 cut(s)	374
BseBI	CCWGG	2 cut(s)	247, 578
BseDI	CCNNGG	6 cut(s)	93, 94, 245, 438, 577, 656
BseGI	GGATG	3 cut(s)	345, 408, 509
BseLI	CCNNNNNNNGG	5 cut(s)	116, 208, 292, 369, 578
BseMI	GCAATG	1 cut(s)	374
BseRI	GAGGAG	3 cut(s)	61, 64, 560
BseSI	GKGCMC	1 cut(s)	307
BseX3I	CGGCCG	1 cut(s)	597
BseXI	GCAGC	4 cut(s)	162, 183, 186, 555
BseYI	CCCAGC	2 cut(s)	358, 550
Bsh1236I	CGCG	3 cut(s)	88, 240, 301
Bsh1285I	CGRYCG	1 cut(s)	600
BshFI	GGCC	3 cut(s)	161, 527, 599
BshNI	GGYRCC	2 cut(s)	272, 721
BsiEI	CGRYCG	1 cut(s)	600
BsiHKCI	CYCGRG	3 cut(s)	13, 94, 402
BsiSI	CCGG	7 cut(s)	95, 117, 185, 369, 534, 542, 725
BslFI	GGGAC	1 cut(s)	595
BslI	CCNNNNNNNGG	5 cut(s)	116, 208, 292, 369, 578
BsmAI	GTCTC	3 cut(s)	20, 114, 399
BsmFI	GGGAC	1 cut(s)	595
BsmI	GAATGC	1 cut(s)	210
BsnI	GGCC	3 cut(s)	161, 527, 599
Bso31I	GGTCTC	1 cut(s)	20
BsoBI	CYCGRG	3 cut(s)	13, 94, 402
Bsp1286I	GDGCHC	2 cut(s)	246, 307
Bsp143I	GATC	1 cut(s)	261
Bsp19I	CCATGG	1 cut(s)	438
BspANI	GGCC	3 cut(s)	161, 527, 599
BspFNI	CGCG	3 cut(s)	88, 240, 301
BspLI	GGNNCC	5 cut(s)	200, 274, 444, 723, 729
BspPI	GGATC	1 cut(s)	269
BspT107I	GGYRCC	2 cut(s)	272, 721
BspTNI	GGTCTC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	374
BssECI	CCNNGG	6 cut(s)	93, 94, 245, 438, 577, 656
BssMI	GATC	1 cut(s)	261
BssNI	GRCGYC	2 cut(s)	312, 531
BssT1I	CCWWGG	1 cut(s)	438
Bst2UI	CCWGG	2 cut(s)	247, 578
Bst6I	CTCTTC	1 cut(s)	678
BstACI	GRCGYC	2 cut(s)	312, 531
BstC8I	GCNNGC	5 cut(s)	179, 210, 242, 303, 732
BstDSI	CCRYGG	2 cut(s)	438, 656
BstF5I	GGATG	3 cut(s)	345, 408, 509
BstFNI	CGCG	3 cut(s)	88, 240, 301
BstHHI	GCGC	2 cut(s)	90, 301
BstKTI	GATC	1 cut(s)	264
BstMAI	GTCTC	3 cut(s)	20, 114, 399
BstMBI	GATC	1 cut(s)	261
BstMCI	CGRYCG	1 cut(s)	600
BstMWI	GCNNNNNNNGC	7 cut(s)	302, 422, 428, 431, 481, 547, 661
BstNI	CCWGG	2 cut(s)	247, 578
BstSCI	CCNGG	7 cut(s)	93, 94, 115, 183, 245, 368, 576
BstSLI	GKGCMC	1 cut(s)	307
BstUI	CGCG	3 cut(s)	88, 240, 301
BstV1I	GCAGC	4 cut(s)	162, 183, 186, 555
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	261
BstXI	CCANNNNNNTGG	1 cut(s)	657
BstYI	RGATCY	1 cut(s)	261
BstZI	CGGCCG	1 cut(s)	597
BsuI	GTATCC	1 cut(s)	238
BsuRI	GGCC	3 cut(s)	161, 527, 599
BtgI	CCRYGG	2 cut(s)	438, 656
BtsCI	GGATG	3 cut(s)	345, 408, 509
BtsIMutI	CAGTG	1 cut(s)	6
Cac8I	GCNNGC	5 cut(s)	179, 210, 242, 303, 732
CfoI	GCGC	2 cut(s)	90, 301
Cfr13I	GGNCC	4 cut(s)	159, 199, 442, 748
Cfr9I	CCCGGG	1 cut(s)	94
CseI	GACGC	1 cut(s)	539
CviAII	CATG	1 cut(s)	439
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
EaeI	YGGCCR	2 cut(s)	525, 597
EagI	CGGCCG	1 cut(s)	597
Eam1104I	CTCTTC	1 cut(s)	678
EarI	CTCTTC	1 cut(s)	678
EciI	GGCGGA	2 cut(s)	67, 331
EclXI	CGGCCG	1 cut(s)	597
Eco130I	CCWWGG	1 cut(s)	438
Eco24I	GRGCYC	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	20
Eco47I	GGWCC	3 cut(s)	199, 442, 748
Eco52I	CGGCCG	1 cut(s)	597
Eco88I	CYCGRG	3 cut(s)	13, 94, 402
EcoO109I	RGGNCCY	1 cut(s)	748
EcoRII	CCWGG	2 cut(s)	245, 576
EcoT14I	CCWWGG	1 cut(s)	438
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	438
FaeI	CATG	1 cut(s)	442
FaiI	YATR	5 cut(s)	440, 448, 690, 696, 713
FaqI	GGGAC	1 cut(s)	595
FatI	CATG	1 cut(s)	438
FauI	CCCGC	2 cut(s)	135, 201
FblI	GTMKAC	1 cut(s)	44
FokI	GGATG	3 cut(s)	332, 395, 496
FriOI	GRGCYC	1 cut(s)	246
GlaI	GCGC	2 cut(s)	89, 300
GsaI	CCCAGC	2 cut(s)	362, 554
HaeIII	GGCC	3 cut(s)	161, 527, 599
HapII	CCGG	7 cut(s)	95, 117, 185, 369, 534, 542, 725
HgaI	GACGC	1 cut(s)	539
HhaI	GCGC	2 cut(s)	90, 301
Hin1I	GRCGYC	2 cut(s)	312, 531
Hin1II	CATG	1 cut(s)	442
Hin6I	GCGC	2 cut(s)	88, 299
HinP1I	GCGC	2 cut(s)	88, 299
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HinfI	GANTC	8 cut(s)	41, 122, 256, 338, 389, 593, 602, 623
HpaII	CCGG	7 cut(s)	95, 117, 185, 369, 534, 542, 725
HphI	GGTGA	4 cut(s)	105, 447, 453, 459
Hpy166II	GTNNAC	2 cut(s)	45, 190
Hpy188I	TCNGA	6 cut(s)	25, 102, 203, 232, 261, 607
Hpy8I	GTNNAC	2 cut(s)	45, 190
Hpy99I	CGWCG	4 cut(s)	314, 317, 520, 533
HpyAV	CCTTC	1 cut(s)	286
HpyCH4IV	ACGT	1 cut(s)	312
HpyF10VI	GCNNNNNNNGC	7 cut(s)	302, 422, 428, 431, 481, 547, 661
HpySE526I	ACGT	1 cut(s)	312
Hsp92I	GRCGYC	2 cut(s)	312, 531
Hsp92II	CATG	1 cut(s)	442
HspAI	GCGC	2 cut(s)	88, 299
Kzo9I	GATC	1 cut(s)	261
LmnI	GCTCC	3 cut(s)	547, 565, 727
Lsp1109I	GCAGC	4 cut(s)	162, 183, 186, 555
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	111
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MboII	GAAGA	4 cut(s)	54, 262, 265, 695
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	2 cut(s)	246, 307
MluCI	AATT	1 cut(s)	703
MlyI	GAGTC	7 cut(s)	50, 116, 332, 383, 602, 611, 617
MmeI	TCCRAC	3 cut(s)	150, 417, 585
MseI	TTAA	1 cut(s)	766
MslI	CAYNNNNRTG	1 cut(s)	655
MspI	CCGG	7 cut(s)	95, 117, 185, 369, 534, 542, 725
MspR9I	CCNGG	7 cut(s)	95, 96, 117, 185, 247, 370, 578
Mva1269I	GAATGC	1 cut(s)	210
MvaI	CCWGG	2 cut(s)	247, 578
MvnI	CGCG	3 cut(s)	88, 240, 301
MwoI	GCNNNNNNNGC	7 cut(s)	302, 422, 428, 431, 481, 547, 661
NciI	CCSGG	5 cut(s)	95, 96, 117, 185, 370
NcoI	CCATGG	1 cut(s)	438
NdeII	GATC	1 cut(s)	261
NlaIII	CATG	1 cut(s)	442
NlaIV	GGNNCC	5 cut(s)	200, 274, 444, 723, 729
NmeAIII	GCCGAG	3 cut(s)	249, 597, 625
NmuCI	GTSAC	1 cut(s)	111
OliI	CACNNNNGTG	1 cut(s)	655
PcsI	WCGNNNNNNNCGW	2 cut(s)	512, 597
PctI	GAATGC	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	256
PflFI	GACNNNGTC	1 cut(s)	496
PleI	GAGTC	7 cut(s)	49, 116, 332, 383, 601, 610, 617
PpsI	GAGTC	7 cut(s)	49, 116, 332, 383, 601, 610, 617
PpuMI	RGGWCCY	1 cut(s)	748
Psp5II	RGGWCCY	1 cut(s)	748
Psp6I	CCWGG	2 cut(s)	245, 576
PspFI	CCCAGC	2 cut(s)	358, 550
PspGI	CCWGG	2 cut(s)	245, 576
PspN4I	GGNNCC	5 cut(s)	200, 274, 444, 723, 729
PspPI	GGNCC	4 cut(s)	159, 199, 442, 748
PspPPI	RGGWCCY	1 cut(s)	748
PsuI	RGATCY	1 cut(s)	261
PsyI	GACNNNGTC	1 cut(s)	496
RseI	CAYNNNNRTG	1 cut(s)	655
SalI	GTCGAC	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	766
Sau3AI	GATC	1 cut(s)	261
Sau96I	GGNCC	4 cut(s)	159, 199, 442, 748
SchI	GAGTC	7 cut(s)	50, 116, 332, 383, 602, 611, 617
ScrFI	CCNGG	7 cut(s)	95, 96, 117, 185, 247, 370, 578
SduI	GDGCHC	2 cut(s)	246, 307
SetI	ASST	7 cut(s)	53, 278, 315, 552, 570, 590, 753
SinI	GGWCC	3 cut(s)	199, 442, 748
SmaI	CCCGGG	1 cut(s)	96
SmiMI	CAYNNNNRTG	1 cut(s)	655
Sse9I	AATT	1 cut(s)	703
StyD4I	CCNGG	7 cut(s)	93, 94, 115, 183, 245, 368, 576
StyI	CCWWGG	1 cut(s)	438
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	3 cut(s)	44, 491, 618
TasI	AATT	1 cut(s)	703
TauI	GCSGC	9 cut(s)	299, 320, 419, 422, 425, 434, 478, 481, 484
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	1 cut(s)	766
Tru9I	TTAA	1 cut(s)	766
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	111
TseI	GCWGC	4 cut(s)	150, 171, 174, 568
Tsp45I	GTSAC	1 cut(s)	111
TspDTI	ATGAA	1 cut(s)	54
TspMI	CCCGGG	1 cut(s)	94
TspRI	CASTG	1 cut(s)	13
Tth111I	GACNNNGTC	1 cut(s)	496
VpaK11BI	GGWCC	3 cut(s)	199, 442, 748
XcmI	CCANNNNNNNNNTGG	3 cut(s)	289, 654, 657
XmaI	CCCGGG	1 cut(s)	94
XmiI	GTMKAC	1 cut(s)	44
ZraI	GACGTC	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.