Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004337

Physical Location & Seq

Genomic Coordinates Reverse (-)

3727453 .. 3728726

Gene Structure 1274 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G11590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCAGAGGAATACTACAGCCTCCGCTCGGAGAGAGTAACTCAGCTTCTTGTCCCTAACTCGGAGTCTGACTCAGTGAGTGACAAAAGCAAAGCTGAGCAAAGCGAGAAGAAGACTAAACGTGGGAGAGACTCCGGTAAACACCCTGTTTATCGCGGAGTAAGGATGAGGAACTGGGGAAAATGGGTGTCGGAGATTCGTGAGCCGAGGAAGAAATCACGTATTTGGCTGGGAACTTTCCCGACGCCGGAGATGGCGGCGCGTGCACACGACGTGGCGGCTCTGAGCATTAAAGGAACGGCCGCTATACTAAACTTCCCTGAACTCGCTGACTCATTCCCTCGACCCGTTTCATTAAGCCCTCGAGACATTCAGACAGCAGCTCTTAAAGCAGCTCACATGGAACCGACGACGTCGTTTTCATCTTCCACGTCTTCGTCGTCGTCTTTGTCTTCTACGTCTTCGCTCGAGTCTCTTGTGTTGGTGATGGACCTCTCGAGGACTGAGTCGGAGGAGCTCGGTGAGATTGTGGAGCTTCCAAGTCTCGGGGCGAGTTACGACGTCGACTCGGCTAACCTTGGGAACGAGTTTGTCTTCTATGACTCAGTTGACTACTGTTTATATCCGCCGCCGTGGGGACAGTCGTCCGAAGATAACTATGGTCACGGAATTAGCCCTAATTTTGGCCATGGCTTGTCATGGGATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

236

Amino Acids

26.04

Weight (kDa)

5.32

Isoelectric Point (pI)

54.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	49 - 99	2.6e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11590 AT5G25810
fragaria_vesca	FvH4_1g05820 FvH4_2g35620
malus_domestica	MD02G1060200.v1.1 MD08G1114100.v1.1 MD15G1093800.v1.1 MD15G1193700.v1.1
prunus_persica	Prupe.1G448600_v2.0.a1 Prupe.7G222700_v2.0.a1
pyrus_communis	pycom02g04920 pycom08g09510 pycom15g17340
rosa_chinensis	RchiOBHm_Chr2g0091471 RchiOBHm_Chr6g0306191
rosa_laevigata	RLG00000010815 RLG00000016227
rosa_multiflora	Rmu_sc0002407.1_g000015 Rmu_sc0003594.1_g000007
rosa_roxburghii	Rroxscaffold_2G00150040 Rroxscaffold_7G00161970
rosa_rugosa	Rorug02G0018200 Rorug06G0347800
rosa_samantha	Rh2BG062600 Rh2CG064300 Rh2DG062700 Rh6AG460400 Rh6BG441000 Rh6CG474400 Rh6DG460700
rosa_wichuraiana	Rw2G005700 Rw6G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	416, 564
AccBSI	CCGCTC	1 cut(s)	27
AccI	GTMKAC	1 cut(s)	564
AccII	CGCG	2 cut(s)	156, 262
AciI	CCGC	7 cut(s)	25, 156, 257, 278, 303, 626, 629
AcoI	YGGCCR	2 cut(s)	300, 685
AcyI	GRCGYC	3 cut(s)	245, 413, 561
AdeI	CACNNNGTG	1 cut(s)	274
AfiI	CCNNNNNNNGG	6 cut(s)	28, 61, 247, 545, 635, 683
AjiI	CACGTC	2 cut(s)	274, 432
AluBI	AGCT	6 cut(s)	46, 95, 383, 395, 517, 535
AluI	AGCT	6 cut(s)	46, 95, 383, 395, 517, 535
Alw21I	GWGCWC	2 cut(s)	268, 519
Alw26I	GTCTC	4 cut(s)	123, 360, 477, 548
Alw44I	GTGCAC	1 cut(s)	264
Ama87I	CYCGRG	4 cut(s)	363, 467, 496, 545
AoxI	GGCC	2 cut(s)	300, 685
ApaLI	GTGCAC	1 cut(s)	264
ApeKI	GCWGC	2 cut(s)	380, 392
AspLEI	GCGC	1 cut(s)	262
AspS9I	GGNCC	1 cut(s)	490
AsuHPI	GGTGA	2 cut(s)	496, 533
AvaI	CYCGRG	4 cut(s)	363, 467, 496, 545
AvaII	GGWCC	1 cut(s)	490
BaeGI	GKGCMC	1 cut(s)	268
BalI	TGGCCA	1 cut(s)	687
BanII	GRGCYC	1 cut(s)	519
BarI	GAAGNNNNNNTAC	2 cut(s)	30, 62
BbsI	GAAGAC	5 cut(s)	119, 426, 444, 453, 586
Bbv12I	GWGCWC	2 cut(s)	268, 519
BbvI	GCAGC	2 cut(s)	392, 404
BccI	CCATC	2 cut(s)	247, 481
BceAI	ACGGC	2 cut(s)	315, 616
BcoDI	GTCTC	4 cut(s)	123, 360, 477, 548
BfmI	CTRYAG	1 cut(s)	16
BisI	GCNGC	6 cut(s)	258, 279, 303, 381, 393, 629
BlpI	GCTNAGC	1 cut(s)	96
BlsI	GCNGC	6 cut(s)	259, 280, 304, 382, 394, 630
Bme18I	GGWCC	1 cut(s)	490
BmeT110I	CYCGRG	4 cut(s)	363, 467, 496, 545
BmgBI	CACGTC	2 cut(s)	274, 432
BmgT120I	GGNCC	1 cut(s)	490
BmiI	GGNNCC	1 cut(s)	405
BmrI	ACTGGG	1 cut(s)	184
BmuI	ACTGGG	1 cut(s)	184
BoxI	GACNNNNGTC	1 cut(s)	643
BpiI	GAAGAC	5 cut(s)	119, 426, 444, 453, 586
BplI	GAGNNNNNCTC	4 cut(s)	25, 57, 56, 88
Bpu1102I	GCTNAGC	1 cut(s)	96
BsaAI	YACGTR	1 cut(s)	221
BsaHI	GRCGYC	3 cut(s)	245, 413, 561
BsaJI	CCNNGG	4 cut(s)	206, 577, 632, 688
BsaWI	WCCGGW	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	6 cut(s)	28, 61, 247, 545, 635, 683
Bse1I	ACTGG	1 cut(s)	179
BseDI	CCNNGG	4 cut(s)	206, 577, 632, 688
BseGI	GGATG	1 cut(s)	171
BseLI	CCNNNNNNNGG	6 cut(s)	28, 61, 247, 545, 635, 683
BseMII	CTCAG	6 cut(s)	56, 87, 87, 275, 495, 618
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	527
BseSI	GKGCMC	1 cut(s)	268
BseX3I	CGGCCG	1 cut(s)	300
BseXI	GCAGC	2 cut(s)	392, 404
BseYI	CCCAGC	1 cut(s)	229
Bsh1236I	CGCG	2 cut(s)	156, 262
Bsh1285I	CGRYCG	1 cut(s)	303
BshFI	GGCC	2 cut(s)	302, 687
BsiEI	CGRYCG	1 cut(s)	303
BsiHKAI	GWGCWC	2 cut(s)	268, 519
BsiHKCI	CYCGRG	4 cut(s)	363, 467, 496, 545
BsiSI	CCGG	2 cut(s)	135, 248
BslFI	GGGAC	2 cut(s)	38, 651
BslI	CCNNNNNNNGG	6 cut(s)	28, 61, 247, 545, 635, 683
BsmAI	GTCTC	4 cut(s)	123, 360, 477, 548
BsmFI	GGGAC	2 cut(s)	38, 651
BsnI	GGCC	2 cut(s)	302, 687
BsoBI	CYCGRG	4 cut(s)	363, 467, 496, 545
Bsp1286I	GDGCHC	2 cut(s)	268, 519
Bsp143I	GATC	1 cut(s)	703
Bsp1720I	GCTNAGC	1 cut(s)	96
Bsp19I	CCATGG	1 cut(s)	688
BspACI	CCGC	7 cut(s)	25, 156, 257, 278, 303, 626, 629
BspANI	GGCC	2 cut(s)	302, 687
BspCNI	CTCAG	6 cut(s)	55, 86, 88, 276, 496, 617
BspFNI	CGCG	2 cut(s)	156, 262
BspLI	GGNNCC	1 cut(s)	405
BsrBI	CCGCTC	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	179
BssECI	CCNNGG	4 cut(s)	206, 577, 632, 688
BssMI	GATC	1 cut(s)	703
BssNI	GRCGYC	3 cut(s)	245, 413, 561
BssT1I	CCWWGG	2 cut(s)	577, 688
Bst4CI	ACNGT	2 cut(s)	617, 642
BstACI	GRCGYC	3 cut(s)	245, 413, 561
BstBAI	YACGTR	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	6 cut(s)	42, 73, 96, 284, 504, 604
BstDSI	CCRYGG	2 cut(s)	632, 688
BstF5I	GGATG	1 cut(s)	171
BstFNI	CGCG	2 cut(s)	156, 262
BstHHI	GCGC	1 cut(s)	262
BstKTI	GATC	1 cut(s)	706
BstMAI	GTCTC	4 cut(s)	123, 360, 477, 548
BstMBI	GATC	1 cut(s)	703
BstMCI	CGRYCG	1 cut(s)	303
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 389
BstPAI	GACNNNNGTC	1 cut(s)	643
BstSFI	CTRYAG	1 cut(s)	16
BstSLI	GKGCMC	1 cut(s)	268
BstUI	CGCG	2 cut(s)	156, 262
BstV1I	GCAGC	2 cut(s)	392, 404
BstV2I	GAAGAC	5 cut(s)	119, 426, 444, 453, 586
BstX2I	RGATCY	1 cut(s)	703
BstYI	RGATCY	1 cut(s)	703
BstZI	CGGCCG	1 cut(s)	300
BsuRI	GGCC	2 cut(s)	302, 687
BtgI	CCRYGG	2 cut(s)	632, 688
BtrI	CACGTC	2 cut(s)	274, 432
BtsCI	GGATG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	264
CfoI	GCGC	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	490
CseI	GACGC	1 cut(s)	253
CviAII	CATG	3 cut(s)	400, 689, 699
DdeI	CTNAG	6 cut(s)	42, 73, 96, 284, 504, 604
DpnI	GATC	1 cut(s)	705
DpnII	GATC	1 cut(s)	703
DraIII	CACNNNGTG	1 cut(s)	274
EaeI	YGGCCR	2 cut(s)	300, 685
EagI	CGGCCG	1 cut(s)	300
EciI	GGCGGA	1 cut(s)	615
Ecl136II	GAGCTC	1 cut(s)	517
EclXI	CGGCCG	1 cut(s)	300
Eco130I	CCWWGG	2 cut(s)	577, 688
Eco24I	GRGCYC	1 cut(s)	519
Eco47I	GGWCC	1 cut(s)	490
Eco52I	CGGCCG	1 cut(s)	300
Eco53kI	GAGCTC	1 cut(s)	517
Eco88I	CYCGRG	4 cut(s)	363, 467, 496, 545
EcoICRI	GAGCTC	1 cut(s)	517
EcoT14I	CCWWGG	2 cut(s)	577, 688
EcoT38I	GRGCYC	1 cut(s)	519
ErhI	CCWWGG	2 cut(s)	577, 688
FaeI	CATG	3 cut(s)	403, 692, 702
FaiI	YATR	7 cut(s)	308, 401, 600, 622, 660, 690, 700
FaqI	GGGAC	2 cut(s)	38, 651
FatI	CATG	3 cut(s)	399, 688, 698
FblI	GTMKAC	1 cut(s)	564
Fnu4HI	GCNGC	6 cut(s)	258, 279, 303, 381, 393, 629
FokI	GGATG	1 cut(s)	178
FriOI	GRGCYC	1 cut(s)	519
Fsp4HI	GCNGC	6 cut(s)	258, 279, 303, 381, 393, 629
GlaI	GCGC	1 cut(s)	261
GluI	GCNGC	6 cut(s)	258, 279, 303, 381, 393, 629
GsaI	CCCAGC	1 cut(s)	233
HaeIII	GGCC	2 cut(s)	302, 687
HapII	CCGG	2 cut(s)	135, 248
HgaI	GACGC	1 cut(s)	253
HhaI	GCGC	1 cut(s)	262
Hin1I	GRCGYC	3 cut(s)	245, 413, 561
Hin1II	CATG	3 cut(s)	403, 692, 702
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HincII	GTYRAC	2 cut(s)	565, 610
HindII	GTYRAC	2 cut(s)	565, 610
HinfI	GANTC	9 cut(s)	65, 71, 131, 196, 332, 470, 506, 566, 602
HpaII	CCGG	2 cut(s)	135, 248
HphI	GGTGA	2 cut(s)	496, 533
Hpy166II	GTNNAC	4 cut(s)	140, 266, 565, 610
Hpy188I	TCNGA	8 cut(s)	31, 64, 70, 193, 285, 375, 511, 649
Hpy188III	TCNNGA	4 cut(s)	200, 241, 365, 496
Hpy8I	GTNNAC	4 cut(s)	140, 266, 565, 610
Hpy99I	CGWCG	9 cut(s)	247, 275, 412, 415, 418, 442, 445, 563, 566
HpyCH4III	ACNGT	2 cut(s)	617, 642
HpyCH4IV	ACGT	7 cut(s)	121, 220, 273, 413, 431, 458, 561
HpyCH4V	TGCA	1 cut(s)	266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 389
HpyF3I	CTNAG	6 cut(s)	42, 73, 96, 284, 504, 604
HpySE526I	ACGT	7 cut(s)	121, 220, 273, 413, 431, 458, 561
Hsp92I	GRCGYC	3 cut(s)	245, 413, 561
Hsp92II	CATG	3 cut(s)	403, 692, 702
HspAI	GCGC	1 cut(s)	260
Kzo9I	GATC	1 cut(s)	703
LmnI	GCTCC	2 cut(s)	514, 532
LpnPI	CCDG	6 cut(s)	148, 159, 160, 215, 261, 333
Lsp1109I	GCAGC	2 cut(s)	392, 404
MaeII	ACGT	7 cut(s)	121, 220, 273, 413, 431, 458, 561
MaeIII	GTNAC	4 cut(s)	37, 80, 554, 662
MalI	GATC	1 cut(s)	705
MbiI	CCGCTC	1 cut(s)	27
MboI	GATC	1 cut(s)	703
MboII	GAAGA	9 cut(s)	121, 124, 223, 417, 426, 444, 453, 586, 662
MflI	RGATCY	1 cut(s)	703
MhlI	GDGCHC	2 cut(s)	268, 519
MlsI	TGGCCA	1 cut(s)	687
MluCI	AATT	2 cut(s)	669, 679
MluNI	TGGCCA	1 cut(s)	687
MlyI	GAGTC	8 cut(s)	65, 74, 125, 326, 479, 515, 560, 596
MmeI	TCCRAC	2 cut(s)	171, 489
MnlI	CCTC	8 cut(s)	32, 162, 201, 351, 372, 492, 503, 505
Mox20I	TGGCCA	1 cut(s)	687
MscI	TGGCCA	1 cut(s)	687
MseI	TTAA	3 cut(s)	291, 356, 387
Msp20I	TGGCCA	1 cut(s)	687
MspI	CCGG	2 cut(s)	135, 248
MvnI	CGCG	2 cut(s)	156, 262
MwoI	GCNNNNNNNGC	2 cut(s)	263, 389
NcoI	CCATGG	1 cut(s)	688
NdeII	GATC	1 cut(s)	703
NlaIII	CATG	3 cut(s)	403, 692, 702
NlaIV	GGNNCC	1 cut(s)	405
NmeAIII	GCCGAG	2 cut(s)	231, 548
NmuCI	GTSAC	2 cut(s)	80, 662
PaeR7I	CTCGAG	3 cut(s)	363, 467, 496
PcsI	WCGNNNNNNNCGW	1 cut(s)	437
PfeI	GAWTC	1 cut(s)	196
PflFI	GACNNNGTC	2 cut(s)	412, 505
PkrI	GCNGC	6 cut(s)	259, 280, 304, 382, 394, 630
PleI	GAGTC	8 cut(s)	65, 73, 125, 326, 478, 514, 560, 596
PpsI	GAGTC	8 cut(s)	65, 73, 125, 326, 478, 514, 560, 596
Ppu21I	YACGTR	1 cut(s)	221
PshAI	GACNNNNGTC	1 cut(s)	643
Psp124BI	GAGCTC	1 cut(s)	519
PspFI	CCCAGC	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	1 cut(s)	490
PspXI	VCTCGAGB	1 cut(s)	467
PsuI	RGATCY	1 cut(s)	703
PsyI	GACNNNGTC	2 cut(s)	412, 505
SacI	GAGCTC	1 cut(s)	519
SalI	GTCGAC	1 cut(s)	563
SaqAI	TTAA	3 cut(s)	291, 356, 387
SatI	GCNGC	6 cut(s)	258, 279, 303, 381, 393, 629
Sau3AI	GATC	1 cut(s)	703
Sau96I	GGNCC	1 cut(s)	490
SchI	GAGTC	8 cut(s)	65, 74, 125, 326, 479, 515, 560, 596
SduI	GDGCHC	2 cut(s)	268, 519
SfcI	CTRYAG	1 cut(s)	16
Sfr274I	CTCGAG	3 cut(s)	363, 467, 496
SinI	GGWCC	1 cut(s)	490
SlaI	CTCGAG	3 cut(s)	363, 467, 496
SmlI	CTYRAG	3 cut(s)	363, 467, 496
SmoI	CTYRAG	3 cut(s)	363, 467, 496
Sse9I	AATT	2 cut(s)	669, 679
SsiI	CCGC	7 cut(s)	25, 156, 257, 278, 303, 626, 629
SstI	GAGCTC	1 cut(s)	519
StyI	CCWWGG	2 cut(s)	577, 688
TaaI	ACNGT	2 cut(s)	617, 642
TaiI	ACGT	7 cut(s)	124, 223, 276, 416, 434, 461, 564
TaqI	TCGA	5 cut(s)	343, 364, 468, 497, 564
TasI	AATT	2 cut(s)	669, 679
TauI	GCSGC	4 cut(s)	260, 281, 305, 631
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	3 cut(s)	291, 356, 387
Tru9I	TTAA	3 cut(s)	291, 356, 387
TscAI	CASTG	1 cut(s)	81
TseFI	GTSAC	2 cut(s)	80, 662
TseI	GCWGC	2 cut(s)	380, 392
Tsp45I	GTSAC	2 cut(s)	80, 662
TspDTI	ATGAA	2 cut(s)	342, 411
TspGWI	ACGGA	1 cut(s)	681
TspRI	CASTG	1 cut(s)	81
Tth111I	GACNNNGTC	2 cut(s)	412, 505
VneI	GTGCAC	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	490
XhoI	CTCGAG	3 cut(s)	363, 467, 496
XmiI	GTMKAC	1 cut(s)	564
ZraI	GACGTC	2 cut(s)	414, 562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.