Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004337

Physical Location & Seq

Genomic Coordinates Forward (+)

4877216 .. 4877980

Gene Structure 765 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016227

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGACCACTGACCCGAGCCACTCGGAGACCACCACCACCGAGTCGACCAGCTTCAACTCGTCTTCATTCTCCTCCTCCGCCTCTCCGCGCTCCCCGGGTCGGAATAACCCGTCACCCGGAGACTCCAACCCGAACGACGACAAGCGGGTCAGCAGCAAACGGGCCAGGGAGAGCAGCAGCAAGCACCCGGTTTACAGAGGGGTCCGAATGCGGGCGTGGGGCAAATGGGTATCCGAAATCCGCGAGCCCAGGAAGAAGAATCGGATCTGGCTCGGCACCTTCTCCACCCCAGAAATGGCGGCGCGTGCCCACGACGTCGCCGCCTTGACCATCAAAGGCGACTCCGCCATCCTCAACTTCCCCGCCTTATCCGGGTCATTGCCCCGACCCGACTCCAACTCGCCCCGAGACATCCAAGCCGCCGCCGCCAAAGCCGCCTCCATGGACCCATCACCAGCGCCGCCGCCTCCGCCGCCGTCGTCATCGACATTGTCGTCGCAATCGTCATCCTCGTCGTCAATGGCCGACGCCGGAACGCCGGAGGAGCTGGGGGAGATAGTGGAGCTGCCGAGCCTGGGGACGAGCTACGAGTCGGCCGAGTCGGAGTTCGTGTTCGAGGACTCGGTGGAGGGGTGGCTCTACCCTCCGCAGCCGTGGTGGCAAAATGGTTATTTTGGAGAAGAGTATGGGTATATTAGGAATTACGATATGATAATGGCACCGGAGCCAGCCTTATGTGTTGAGGACCTGCTGTGGCAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

255

Amino Acids

27.66

Weight (kDa)

5.01

Isoelectric Point (pI)

68.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	63 - 113	1.1e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11590 AT5G25810
fragaria_vesca	FvH4_1g05820 FvH4_2g35620
malus_domestica	MD02G1060200.v1.1 MD08G1114100.v1.1 MD15G1093800.v1.1 MD15G1193700.v1.1
prunus_persica	Prupe.1G448600_v2.0.a1 Prupe.7G222700_v2.0.a1
pyrus_communis	pycom02g04920 pycom08g09510 pycom15g17340
rosa_chinensis	RchiOBHm_Chr2g0091471 RchiOBHm_Chr6g0306191
rosa_laevigata	RLG00000010815 RLG00000016227
rosa_multiflora	Rmu_sc0002407.1_g000015 Rmu_sc0003594.1_g000007
rosa_roxburghii	Rroxscaffold_2G00150040 Rroxscaffold_7G00161970
rosa_rugosa	Rorug02G0018200 Rorug06G0347800
rosa_samantha	Rh2BG062600 Rh2CG064300 Rh2DG062700 Rh6AG460400 Rh6BG441000 Rh6CG474400 Rh6DG460700
rosa_wichuraiana	Rw2G005700 Rw6G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	146, 493
AatII	GACGTC	1 cut(s)	318
Acc36I	ACCTGC	1 cut(s)	756
AccB1I	GGYRCC	2 cut(s)	275, 718
AccI	GTMKAC	1 cut(s)	44
AccII	CGCG	3 cut(s)	88, 243, 304
AclWI	GGATC	1 cut(s)	272
AcoI	YGGCCR	2 cut(s)	522, 594
AcyI	GRCGYC	2 cut(s)	315, 528
AfiI	CCNNNNNNNGG	6 cut(s)	99, 116, 211, 295, 372, 575
AgsI	TTSAA	1 cut(s)	55
AjnI	CCWGG	3 cut(s)	164, 248, 573
AloI	GAACNNNNNNTCC	2 cut(s)	596, 628
AluBI	AGCT	4 cut(s)	51, 547, 565, 585
AluI	AGCT	4 cut(s)	51, 547, 565, 585
Alw26I	GTCTC	3 cut(s)	20, 114, 402
AlwI	GGATC	1 cut(s)	272
Ama87I	CYCGRG	3 cut(s)	13, 94, 405
AoxI	GGCC	3 cut(s)	162, 522, 594
ApeKI	GCWGC	5 cut(s)	153, 174, 177, 565, 649
AspLEI	GCGC	3 cut(s)	90, 304, 460
AspS9I	GGNCC	4 cut(s)	162, 202, 445, 745
AsuC2I	CCSGG	5 cut(s)	95, 96, 117, 188, 373
AsuHPI	GGTGA	2 cut(s)	105, 444
AvaI	CYCGRG	3 cut(s)	13, 94, 405
AvaII	GGWCC	3 cut(s)	202, 445, 745
BaeGI	GKGCMC	1 cut(s)	310
BanI	GGYRCC	2 cut(s)	275, 718
BanII	GRGCYC	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	54
BbvI	GCAGC	5 cut(s)	165, 186, 189, 552, 661
BccI	CCATC	3 cut(s)	338, 356, 457
BceAI	ACGGC	2 cut(s)	460, 637
BciT130I	CCWGG	3 cut(s)	166, 250, 575
BciVI	GTATCC	1 cut(s)	241
BcnI	CCSGG	5 cut(s)	95, 96, 117, 188, 373
BcoDI	GTCTC	3 cut(s)	20, 114, 402
BfoI	RGCGCY	1 cut(s)	461
BfuAI	ACCTGC	1 cut(s)	756
BfuI	GTATCC	1 cut(s)	241
BglI	GCCNNNNNGGC	1 cut(s)	658
Bme1390I	CCNGG	8 cut(s)	95, 96, 117, 166, 188, 250, 373, 575
Bme18I	GGWCC	3 cut(s)	202, 445, 745
BmeT110I	CYCGRG	3 cut(s)	13, 94, 405
BmgT120I	GGNCC	4 cut(s)	162, 202, 445, 745
BmiI	GGNNCC	5 cut(s)	203, 277, 447, 720, 726
BmrFI	CCNGG	8 cut(s)	95, 96, 117, 166, 188, 250, 373, 575
BpiI	GAAGAC	1 cut(s)	54
BpuMI	CCSGG	5 cut(s)	95, 96, 117, 188, 373
BsaHI	GRCGYC	2 cut(s)	315, 528
BsaI	GGTCTC	1 cut(s)	20
BsaJI	CCNNGG	7 cut(s)	93, 94, 165, 248, 441, 574, 653
BsaWI	WCCGGW	1 cut(s)	721
BsaXI	ACNNNNNCTCC	2 cut(s)	596, 626
Bsc4I	CCNNNNNNNGG	6 cut(s)	99, 116, 211, 295, 372, 575
Bse3DI	GCAATG	1 cut(s)	377
BseBI	CCWGG	3 cut(s)	166, 250, 575
BseDI	CCNNGG	7 cut(s)	93, 94, 165, 248, 441, 574, 653
BseGI	GGATG	3 cut(s)	348, 411, 506
BseLI	CCNNNNNNNGG	6 cut(s)	99, 116, 211, 295, 372, 575
BseMI	GCAATG	1 cut(s)	377
BseRI	GAGGAG	3 cut(s)	61, 64, 557
BseSI	GKGCMC	1 cut(s)	310
BseX3I	CGGCCG	1 cut(s)	594
BseXI	GCAGC	5 cut(s)	165, 186, 189, 552, 661
BseYI	CCCAGC	1 cut(s)	547
Bsh1236I	CGCG	3 cut(s)	88, 243, 304
Bsh1285I	CGRYCG	1 cut(s)	597
BshFI	GGCC	3 cut(s)	164, 524, 596
BshNI	GGYRCC	2 cut(s)	275, 718
BsiEI	CGRYCG	1 cut(s)	597
BsiHKCI	CYCGRG	3 cut(s)	13, 94, 405
BsiSI	CCGG	7 cut(s)	95, 117, 188, 372, 531, 539, 722
BslFI	GGGAC	1 cut(s)	592
BslI	CCNNNNNNNGG	6 cut(s)	99, 116, 211, 295, 372, 575
BsmAI	GTCTC	3 cut(s)	20, 114, 402
BsmFI	GGGAC	1 cut(s)	592
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	3 cut(s)	164, 524, 596
Bso31I	GGTCTC	1 cut(s)	20
BsoBI	CYCGRG	3 cut(s)	13, 94, 405
Bsp1286I	GDGCHC	2 cut(s)	249, 310
Bsp143I	GATC	1 cut(s)	264
Bsp19I	CCATGG	1 cut(s)	441
BspANI	GGCC	3 cut(s)	164, 524, 596
BspFNI	CGCG	3 cut(s)	88, 243, 304
BspLI	GGNNCC	5 cut(s)	203, 277, 447, 720, 726
BspMI	ACCTGC	1 cut(s)	756
BspPI	GGATC	1 cut(s)	272
BspT107I	GGYRCC	2 cut(s)	275, 718
BspTNI	GGTCTC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	377
BssECI	CCNNGG	7 cut(s)	93, 94, 165, 248, 441, 574, 653
BssMI	GATC	1 cut(s)	264
BssNI	GRCGYC	2 cut(s)	315, 528
BssT1I	CCWWGG	1 cut(s)	441
Bst2UI	CCWGG	3 cut(s)	166, 250, 575
Bst6I	CTCTTC	1 cut(s)	675
BstACI	GRCGYC	2 cut(s)	315, 528
BstC8I	GCNNGC	5 cut(s)	182, 213, 245, 306, 729
BstDSI	CCRYGG	2 cut(s)	441, 653
BstF5I	GGATG	3 cut(s)	348, 411, 506
BstFNI	CGCG	3 cut(s)	88, 243, 304
BstH2I	RGCGCY	1 cut(s)	461
BstHHI	GCGC	3 cut(s)	90, 304, 460
BstKTI	GATC	1 cut(s)	267
BstMAI	GTCTC	3 cut(s)	20, 114, 402
BstMBI	GATC	1 cut(s)	264
BstMCI	CGRYCG	1 cut(s)	597
BstMWI	GCNNNNNNNGC	8 cut(s)	305, 425, 431, 434, 469, 472, 544, 658
BstNI	CCWGG	3 cut(s)	166, 250, 575
BstSCI	CCNGG	8 cut(s)	93, 94, 115, 164, 186, 248, 371, 573
BstSLI	GKGCMC	1 cut(s)	310
BstUI	CGCG	3 cut(s)	88, 243, 304
BstV1I	GCAGC	5 cut(s)	165, 186, 189, 552, 661
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	264
BstZI	CGGCCG	1 cut(s)	594
BsuI	GTATCC	1 cut(s)	241
BsuRI	GGCC	3 cut(s)	164, 524, 596
BtgI	CCRYGG	2 cut(s)	441, 653
BtsCI	GGATG	3 cut(s)	348, 411, 506
BtsIMutI	CAGTG	1 cut(s)	6
BveI	ACCTGC	1 cut(s)	756
Cac8I	GCNNGC	5 cut(s)	182, 213, 245, 306, 729
CfoI	GCGC	3 cut(s)	90, 304, 460
Cfr13I	GGNCC	4 cut(s)	162, 202, 445, 745
Cfr9I	CCCGGG	1 cut(s)	94
CseI	GACGC	1 cut(s)	536
CviAII	CATG	1 cut(s)	442
DpnI	GATC	1 cut(s)	266
DpnII	GATC	1 cut(s)	264
DrdI	GACNNNNNNGTC	2 cut(s)	146, 493
DseDI	GACNNNNNNGTC	2 cut(s)	146, 493
EaeI	YGGCCR	2 cut(s)	522, 594
EagI	CGGCCG	1 cut(s)	594
Eam1104I	CTCTTC	1 cut(s)	675
EarI	CTCTTC	1 cut(s)	675
EciI	GGCGGA	3 cut(s)	67, 334, 459
EclXI	CGGCCG	1 cut(s)	594
Eco130I	CCWWGG	1 cut(s)	441
Eco24I	GRGCYC	1 cut(s)	249
Eco31I	GGTCTC	1 cut(s)	20
Eco47I	GGWCC	3 cut(s)	202, 445, 745
Eco52I	CGGCCG	1 cut(s)	594
Eco88I	CYCGRG	3 cut(s)	13, 94, 405
EcoO109I	RGGNCCY	1 cut(s)	745
EcoRII	CCWGG	3 cut(s)	164, 248, 573
EcoT14I	CCWWGG	1 cut(s)	441
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	441
FaeI	CATG	1 cut(s)	445
FaiI	YATR	5 cut(s)	443, 687, 693, 710, 736
FaqI	GGGAC	1 cut(s)	592
FatI	CATG	1 cut(s)	441
FauI	CCCGC	3 cut(s)	138, 204, 370
FblI	GTMKAC	1 cut(s)	44
FokI	GGATG	3 cut(s)	335, 398, 493
FriOI	GRGCYC	1 cut(s)	249
GlaI	GCGC	3 cut(s)	89, 303, 459
GsaI	CCCAGC	1 cut(s)	551
HaeII	RGCGCY	1 cut(s)	461
HaeIII	GGCC	3 cut(s)	164, 524, 596
HapII	CCGG	7 cut(s)	95, 117, 188, 372, 531, 539, 722
HgaI	GACGC	1 cut(s)	536
HhaI	GCGC	3 cut(s)	90, 304, 460
Hin1I	GRCGYC	2 cut(s)	315, 528
Hin1II	CATG	1 cut(s)	445
Hin6I	GCGC	3 cut(s)	88, 302, 458
HinP1I	GCGC	3 cut(s)	88, 302, 458
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HinfI	GANTC	8 cut(s)	41, 122, 259, 341, 392, 590, 599, 620
HpaII	CCGG	7 cut(s)	95, 117, 188, 372, 531, 539, 722
HphI	GGTGA	2 cut(s)	105, 444
Hpy166II	GTNNAC	2 cut(s)	45, 193
Hpy188I	TCNGA	6 cut(s)	25, 102, 206, 235, 264, 604
Hpy8I	GTNNAC	2 cut(s)	45, 193
Hpy99I	CGWCG	7 cut(s)	140, 317, 320, 481, 499, 517, 530
HpyAV	CCTTC	1 cut(s)	289
HpyCH4IV	ACGT	1 cut(s)	315
HpyF10VI	GCNNNNNNNGC	8 cut(s)	305, 425, 431, 434, 469, 472, 544, 658
HpySE526I	ACGT	1 cut(s)	315
Hsp92I	GRCGYC	2 cut(s)	315, 528
Hsp92II	CATG	1 cut(s)	445
HspAI	GCGC	3 cut(s)	88, 302, 458
Kzo9I	GATC	1 cut(s)	264
LmnI	GCTCC	4 cut(s)	95, 544, 562, 724
Lsp1109I	GCAGC	5 cut(s)	165, 186, 189, 552, 661
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	1 cut(s)	111
MalI	GATC	1 cut(s)	266
MboI	GATC	1 cut(s)	264
MboII	GAAGA	4 cut(s)	54, 265, 268, 692
MflI	RGATCY	1 cut(s)	264
MhlI	GDGCHC	2 cut(s)	249, 310
MluCI	AATT	1 cut(s)	700
MlyI	GAGTC	7 cut(s)	50, 116, 335, 386, 599, 608, 614
MmeI	TCCRAC	4 cut(s)	80, 150, 420, 582
MseI	TTAA	1 cut(s)	763
MspI	CCGG	7 cut(s)	95, 117, 188, 372, 531, 539, 722
MspR9I	CCNGG	8 cut(s)	95, 96, 117, 166, 188, 250, 373, 575
Mva1269I	GAATGC	1 cut(s)	213
MvaI	CCWGG	3 cut(s)	166, 250, 575
MvnI	CGCG	3 cut(s)	88, 243, 304
MwoI	GCNNNNNNNGC	8 cut(s)	305, 425, 431, 434, 469, 472, 544, 658
NciI	CCSGG	5 cut(s)	95, 96, 117, 188, 373
NcoI	CCATGG	1 cut(s)	441
NdeII	GATC	1 cut(s)	264
NlaIII	CATG	1 cut(s)	445
NlaIV	GGNNCC	5 cut(s)	203, 277, 447, 720, 726
NmeAIII	GCCGAG	3 cut(s)	252, 594, 622
NmuCI	GTSAC	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	4 cut(s)	491, 500, 509, 594
PctI	GAATGC	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	259
PflFI	GACNNNGTC	1 cut(s)	490
PleI	GAGTC	7 cut(s)	49, 116, 335, 386, 598, 607, 614
PpsI	GAGTC	7 cut(s)	49, 116, 335, 386, 598, 607, 614
PpuMI	RGGWCCY	1 cut(s)	745
Psp5II	RGGWCCY	1 cut(s)	745
Psp6I	CCWGG	3 cut(s)	164, 248, 573
PspFI	CCCAGC	1 cut(s)	547
PspGI	CCWGG	3 cut(s)	164, 248, 573
PspN4I	GGNNCC	5 cut(s)	203, 277, 447, 720, 726
PspPI	GGNCC	4 cut(s)	162, 202, 445, 745
PspPPI	RGGWCCY	1 cut(s)	745
PsuI	RGATCY	1 cut(s)	264
PsyI	GACNNNGTC	1 cut(s)	490
SalI	GTCGAC	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	763
Sau3AI	GATC	1 cut(s)	264
Sau96I	GGNCC	4 cut(s)	162, 202, 445, 745
SchI	GAGTC	7 cut(s)	50, 116, 335, 386, 599, 608, 614
ScrFI	CCNGG	8 cut(s)	95, 96, 117, 166, 188, 250, 373, 575
SduI	GDGCHC	2 cut(s)	249, 310
SetI	ASST	7 cut(s)	53, 281, 318, 549, 567, 587, 750
SinI	GGWCC	3 cut(s)	202, 445, 745
SmaI	CCCGGG	1 cut(s)	96
Sse9I	AATT	1 cut(s)	700
StyD4I	CCNGG	8 cut(s)	93, 94, 115, 164, 186, 248, 371, 573
StyI	CCWWGG	1 cut(s)	441
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	3 cut(s)	44, 485, 615
TasI	AATT	1 cut(s)	700
TauI	GCSGC	9 cut(s)	302, 323, 422, 425, 428, 437, 463, 466, 475
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	1 cut(s)	763
Tru9I	TTAA	1 cut(s)	763
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	111
TseI	GCWGC	5 cut(s)	153, 174, 177, 565, 649
Tsp45I	GTSAC	1 cut(s)	111
TspDTI	ATGAA	1 cut(s)	54
TspMI	CCCGGG	1 cut(s)	94
TspRI	CASTG	1 cut(s)	13
Tth111I	GACNNNGTC	1 cut(s)	490
VpaK11BI	GGWCC	3 cut(s)	202, 445, 745
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XmaI	CCCGGG	1 cut(s)	94
XmiI	GTMKAC	1 cut(s)	44
ZraI	GACGTC	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.