Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004337

Physical Location & Seq

Genomic Coordinates Forward (+)

4609368 .. 4610974

Gene Structure 1607 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG062700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGACCACTGACCCGAGCCACTCGGAGACCACCACCACCACCGAGTCGACCAGCTTCAACTCGTCTTCATTCTCCTCCTCCGCCTCTCCGCGCTCCCCGGGTCAGAATAACCCGTCACCCGGAGACTCCAACCCGAACGACGAGAAGCGGGTCAGCAGCAAACGGGCCAGGGAGAGCAGCAGCAAGCACCCGGTCTACAGAGGGGTCCGAATGCGGGCGTGGGGCAAATGGGTATCCGAAATCCGCGAGCCCAGGAAGAAGAATCGGATCTGGCTCGGCACCTTCTCCACCCCCGAAATGGCGGCGCGTGCCCACGACGTCGCCGCCTTGACCATCAAAGGCGACTCCGCCATCCTCAACTTCCCCGCCTTATCCGGGTCATTGCCCCGACCCGACTCCAACTCGCCCCGAGACATCCAAGCCGCCGCCGCCAAAGCCGCCTCCATGGACCCATCACCAACCCCGCCGCCGCGGCCGCCGCCGTCAGCGACATTGTCGCAATCGTCGTCCTCGTCGTCAATGGCCGACGCCGGAACGCCGGAGGAGCTGGGGGAGATAGTGGAGCTGCCGAGCCTGGGGACGAGCTACGAGTCGGCGGAGTCGGAGTTCGTGTTCGAGGACTCGGTGGAGGGGTGGCTGTACCCTCCGCAGCCGTGGTGGCAAAATGGTTATTTTGGAGAAGAGTATGGGTATATTAGGAATTACGATATGATAATGGCACCGGAGCCAGCCTTATGTGTTGAGGACCTGTTGTGGCAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

254

Amino Acids

27.74

Weight (kDa)

5.02

Isoelectric Point (pI)

64.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	64 - 114	1.1e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11590 AT5G25810
fragaria_vesca	FvH4_1g05820 FvH4_2g35620
malus_domestica	MD02G1060200.v1.1 MD08G1114100.v1.1 MD15G1093800.v1.1 MD15G1193700.v1.1
prunus_persica	Prupe.1G448600_v2.0.a1 Prupe.7G222700_v2.0.a1
pyrus_communis	pycom02g04920 pycom08g09510 pycom15g17340
rosa_chinensis	RchiOBHm_Chr2g0091471 RchiOBHm_Chr6g0306191
rosa_laevigata	RLG00000010815 RLG00000016227
rosa_multiflora	Rmu_sc0002407.1_g000015 Rmu_sc0003594.1_g000007
rosa_roxburghii	Rroxscaffold_2G00150040 Rroxscaffold_7G00161970
rosa_rugosa	Rorug02G0018200 Rorug06G0347800
rosa_samantha	Rh2BG062600 Rh2CG064300 Rh2DG062700 Rh6AG460400 Rh6BG441000 Rh6CG474400 Rh6DG460700
rosa_wichuraiana	Rw2G005700 Rw6G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	321
AccB1I	GGYRCC	2 cut(s)	278, 718
AccI	GTMKAC	2 cut(s)	47, 195
AccII	CGCG	4 cut(s)	91, 246, 307, 472
AclWI	GGATC	1 cut(s)	275
AcoI	YGGCCR	2 cut(s)	473, 522
AcyI	GRCGYC	2 cut(s)	318, 528
AfaI	GTAC	1 cut(s)	641
AfiI	CCNNNNNNNGG	5 cut(s)	119, 214, 298, 375, 575
AgsI	TTSAA	1 cut(s)	58
AjnI	CCWGG	3 cut(s)	167, 251, 573
AloI	GAACNNNNNNTCC	4 cut(s)	590, 596, 622, 628
AluBI	AGCT	4 cut(s)	54, 547, 565, 585
AluI	AGCT	4 cut(s)	54, 547, 565, 585
Alw26I	GTCTC	3 cut(s)	20, 117, 405
AlwI	GGATC	1 cut(s)	275
Ama87I	CYCGRG	3 cut(s)	13, 97, 408
AoxI	GGCC	3 cut(s)	165, 473, 522
ApeKI	GCWGC	5 cut(s)	156, 177, 180, 565, 649
AspLEI	GCGC	2 cut(s)	93, 307
AspS9I	GGNCC	4 cut(s)	165, 205, 448, 745
AsuC2I	CCSGG	5 cut(s)	98, 99, 120, 191, 376
AsuHPI	GGTGA	2 cut(s)	108, 447
AvaI	CYCGRG	3 cut(s)	13, 97, 408
AvaII	GGWCC	3 cut(s)	205, 448, 745
BaeGI	GKGCMC	1 cut(s)	313
BanI	GGYRCC	2 cut(s)	278, 718
BanII	GRGCYC	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	5 cut(s)	168, 189, 192, 552, 661
BccI	CCATC	3 cut(s)	341, 359, 460
BceAI	ACGGC	2 cut(s)	466, 637
BciT130I	CCWGG	3 cut(s)	169, 253, 575
BciVI	GTATCC	1 cut(s)	244
BcnI	CCSGG	5 cut(s)	98, 99, 120, 191, 376
BcoDI	GTCTC	3 cut(s)	20, 117, 405
BfmI	CTRYAG	1 cut(s)	196
BfuI	GTATCC	1 cut(s)	244
BglI	GCCNNNNNGGC	2 cut(s)	472, 658
Bme1390I	CCNGG	8 cut(s)	98, 99, 120, 169, 191, 253, 376, 575
Bme18I	GGWCC	3 cut(s)	205, 448, 745
BmeT110I	CYCGRG	3 cut(s)	13, 97, 408
BmgT120I	GGNCC	4 cut(s)	165, 205, 448, 745
BmiI	GGNNCC	5 cut(s)	206, 280, 450, 720, 726
BmrFI	CCNGG	8 cut(s)	98, 99, 120, 169, 191, 253, 376, 575
BpiI	GAAGAC	1 cut(s)	57
BpuMI	CCSGG	5 cut(s)	98, 99, 120, 191, 376
BsaHI	GRCGYC	2 cut(s)	318, 528
BsaI	GGTCTC	1 cut(s)	20
BsaJI	CCNNGG	8 cut(s)	96, 97, 168, 251, 444, 470, 574, 653
BsaWI	WCCGGW	1 cut(s)	721
BsaXI	ACNNNNNCTCC	4 cut(s)	590, 596, 620, 626
Bsc4I	CCNNNNNNNGG	5 cut(s)	119, 214, 298, 375, 575
Bse3DI	GCAATG	1 cut(s)	380
BseBI	CCWGG	3 cut(s)	169, 253, 575
BseDI	CCNNGG	8 cut(s)	96, 97, 168, 251, 444, 470, 574, 653
BseGI	GGATG	2 cut(s)	351, 414
BseLI	CCNNNNNNNGG	5 cut(s)	119, 214, 298, 375, 575
BseMI	GCAATG	1 cut(s)	380
BseRI	GAGGAG	3 cut(s)	64, 67, 557
BseSI	GKGCMC	1 cut(s)	313
BseX3I	CGGCCG	1 cut(s)	473
BseXI	GCAGC	5 cut(s)	168, 189, 192, 552, 661
BseYI	CCCAGC	1 cut(s)	547
Bsh1236I	CGCG	4 cut(s)	91, 246, 307, 472
Bsh1285I	CGRYCG	1 cut(s)	476
BshFI	GGCC	3 cut(s)	167, 475, 524
BshNI	GGYRCC	2 cut(s)	278, 718
BsiEI	CGRYCG	1 cut(s)	476
BsiHKCI	CYCGRG	3 cut(s)	13, 97, 408
BsiSI	CCGG	7 cut(s)	98, 120, 191, 375, 531, 539, 722
BslFI	GGGAC	1 cut(s)	592
BslI	CCNNNNNNNGG	5 cut(s)	119, 214, 298, 375, 575
BsmAI	GTCTC	3 cut(s)	20, 117, 405
BsmFI	GGGAC	1 cut(s)	592
BsmI	GAATGC	1 cut(s)	216
BsnI	GGCC	3 cut(s)	167, 475, 524
Bso31I	GGTCTC	1 cut(s)	20
BsoBI	CYCGRG	3 cut(s)	13, 97, 408
Bsp1286I	GDGCHC	2 cut(s)	252, 313
Bsp143I	GATC	1 cut(s)	267
Bsp19I	CCATGG	1 cut(s)	444
BspANI	GGCC	3 cut(s)	167, 475, 524
BspFNI	CGCG	4 cut(s)	91, 246, 307, 472
BspLI	GGNNCC	5 cut(s)	206, 280, 450, 720, 726
BspPI	GGATC	1 cut(s)	275
BspT107I	GGYRCC	2 cut(s)	278, 718
BspTNI	GGTCTC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	380
BssECI	CCNNGG	8 cut(s)	96, 97, 168, 251, 444, 470, 574, 653
BssMI	GATC	1 cut(s)	267
BssNI	GRCGYC	2 cut(s)	318, 528
BssT1I	CCWWGG	1 cut(s)	444
Bst2UI	CCWGG	3 cut(s)	169, 253, 575
Bst6I	CTCTTC	1 cut(s)	675
BstACI	GRCGYC	2 cut(s)	318, 528
BstC8I	GCNNGC	5 cut(s)	185, 216, 248, 309, 729
BstDSI	CCRYGG	3 cut(s)	444, 470, 653
BstF5I	GGATG	2 cut(s)	351, 414
BstFNI	CGCG	4 cut(s)	91, 246, 307, 472
BstHHI	GCGC	2 cut(s)	93, 307
BstKTI	GATC	1 cut(s)	270
BstMAI	GTCTC	3 cut(s)	20, 117, 405
BstMBI	GATC	1 cut(s)	267
BstMCI	CGRYCG	1 cut(s)	476
BstMWI	GCNNNNNNNGC	9 cut(s)	308, 428, 434, 437, 472, 475, 478, 544, 658
BstNI	CCWGG	3 cut(s)	169, 253, 575
BstSCI	CCNGG	8 cut(s)	96, 97, 118, 167, 189, 251, 374, 573
BstSFI	CTRYAG	1 cut(s)	196
BstSLI	GKGCMC	1 cut(s)	313
BstUI	CGCG	4 cut(s)	91, 246, 307, 472
BstV1I	GCAGC	5 cut(s)	168, 189, 192, 552, 661
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	267
BstZI	CGGCCG	1 cut(s)	473
BsuI	GTATCC	1 cut(s)	244
BsuRI	GGCC	3 cut(s)	167, 475, 524
BtgI	CCRYGG	3 cut(s)	444, 470, 653
BtsCI	GGATG	2 cut(s)	351, 414
BtsIMutI	CAGTG	1 cut(s)	6
Cac8I	GCNNGC	5 cut(s)	185, 216, 248, 309, 729
CciNI	GCGGCCGC	1 cut(s)	473
CfoI	GCGC	2 cut(s)	93, 307
Cfr13I	GGNCC	4 cut(s)	165, 205, 448, 745
Cfr42I	CCGCGG	1 cut(s)	473
Cfr9I	CCCGGG	1 cut(s)	97
CseI	GACGC	1 cut(s)	536
Csp6I	GTAC	1 cut(s)	640
CviAII	CATG	1 cut(s)	445
CviQI	GTAC	1 cut(s)	640
DpnI	GATC	1 cut(s)	269
DpnII	GATC	1 cut(s)	267
EaeI	YGGCCR	2 cut(s)	473, 522
EagI	CGGCCG	1 cut(s)	473
Eam1104I	CTCTTC	1 cut(s)	675
EarI	CTCTTC	1 cut(s)	675
EciI	GGCGGA	3 cut(s)	70, 337, 611
EclXI	CGGCCG	1 cut(s)	473
Eco130I	CCWWGG	1 cut(s)	444
Eco24I	GRGCYC	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	20
Eco47I	GGWCC	3 cut(s)	205, 448, 745
Eco52I	CGGCCG	1 cut(s)	473
Eco88I	CYCGRG	3 cut(s)	13, 97, 408
EcoO109I	RGGNCCY	1 cut(s)	745
EcoRII	CCWGG	3 cut(s)	167, 251, 573
EcoT14I	CCWWGG	1 cut(s)	444
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	444
FaeI	CATG	1 cut(s)	448
FaiI	YATR	5 cut(s)	446, 687, 693, 710, 736
FaqI	GGGAC	1 cut(s)	592
FatI	CATG	1 cut(s)	444
FauI	CCCGC	4 cut(s)	141, 207, 373, 471
FblI	GTMKAC	2 cut(s)	47, 195
FokI	GGATG	2 cut(s)	338, 401
FriOI	GRGCYC	1 cut(s)	252
GlaI	GCGC	2 cut(s)	92, 306
GsaI	CCCAGC	1 cut(s)	551
HaeIII	GGCC	3 cut(s)	167, 475, 524
HapII	CCGG	7 cut(s)	98, 120, 191, 375, 531, 539, 722
HgaI	GACGC	1 cut(s)	536
HhaI	GCGC	2 cut(s)	93, 307
Hin1I	GRCGYC	2 cut(s)	318, 528
Hin1II	CATG	1 cut(s)	448
Hin6I	GCGC	2 cut(s)	91, 305
HinP1I	GCGC	2 cut(s)	91, 305
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HinfI	GANTC	8 cut(s)	44, 125, 262, 344, 395, 590, 599, 620
HpaII	CCGG	7 cut(s)	98, 120, 191, 375, 531, 539, 722
HphI	GGTGA	2 cut(s)	108, 447
Hpy166II	GTNNAC	2 cut(s)	48, 196
Hpy188I	TCNGA	6 cut(s)	25, 105, 209, 238, 267, 604
Hpy8I	GTNNAC	2 cut(s)	48, 196
Hpy99I	CGWCG	6 cut(s)	143, 320, 323, 508, 517, 530
HpyAV	CCTTC	1 cut(s)	292
HpyCH4IV	ACGT	1 cut(s)	318
HpyF10VI	GCNNNNNNNGC	9 cut(s)	308, 428, 434, 437, 472, 475, 478, 544, 658
HpySE526I	ACGT	1 cut(s)	318
Hsp92I	GRCGYC	2 cut(s)	318, 528
Hsp92II	CATG	1 cut(s)	448
HspAI	GCGC	2 cut(s)	91, 305
KspI	CCGCGG	1 cut(s)	473
Kzo9I	GATC	1 cut(s)	267
LmnI	GCTCC	4 cut(s)	98, 544, 562, 724
Lsp1109I	GCAGC	5 cut(s)	168, 189, 192, 552, 661
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	114
MalI	GATC	1 cut(s)	269
MboI	GATC	1 cut(s)	267
MboII	GAAGA	4 cut(s)	57, 268, 271, 692
MflI	RGATCY	1 cut(s)	267
MhlI	GDGCHC	2 cut(s)	252, 313
MluCI	AATT	1 cut(s)	700
MlyI	GAGTC	7 cut(s)	53, 119, 338, 389, 599, 608, 614
MmeI	TCCRAC	3 cut(s)	153, 423, 582
MseI	TTAA	1 cut(s)	763
MspA1I	CMGCKG	1 cut(s)	472
MspI	CCGG	7 cut(s)	98, 120, 191, 375, 531, 539, 722
MspR9I	CCNGG	8 cut(s)	98, 99, 120, 169, 191, 253, 376, 575
Mva1269I	GAATGC	1 cut(s)	216
MvaI	CCWGG	3 cut(s)	169, 253, 575
MvnI	CGCG	4 cut(s)	91, 246, 307, 472
MwoI	GCNNNNNNNGC	9 cut(s)	308, 428, 434, 437, 472, 475, 478, 544, 658
NciI	CCSGG	5 cut(s)	98, 99, 120, 191, 376
NcoI	CCATGG	1 cut(s)	444
NdeII	GATC	1 cut(s)	267
NlaIII	CATG	1 cut(s)	448
NlaIV	GGNNCC	5 cut(s)	206, 280, 450, 720, 726
NmeAIII	GCCGAG	2 cut(s)	255, 594
NmuCI	GTSAC	1 cut(s)	114
NotI	GCGGCCGC	1 cut(s)	473
PcsI	WCGNNNNNNNCGW	3 cut(s)	503, 509, 512
PctI	GAATGC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	262
PflFI	GACNNNGTC	1 cut(s)	493
PleI	GAGTC	7 cut(s)	52, 119, 338, 389, 598, 607, 614
PpsI	GAGTC	7 cut(s)	52, 119, 338, 389, 598, 607, 614
PpuMI	RGGWCCY	1 cut(s)	745
Psp5II	RGGWCCY	1 cut(s)	745
Psp6I	CCWGG	3 cut(s)	167, 251, 573
PspFI	CCCAGC	1 cut(s)	547
PspGI	CCWGG	3 cut(s)	167, 251, 573
PspN4I	GGNNCC	5 cut(s)	206, 280, 450, 720, 726
PspPI	GGNCC	4 cut(s)	165, 205, 448, 745
PspPPI	RGGWCCY	1 cut(s)	745
PsuI	RGATCY	1 cut(s)	267
PsyI	GACNNNGTC	1 cut(s)	493
RsaI	GTAC	1 cut(s)	641
RsaNI	GTAC	1 cut(s)	640
SacII	CCGCGG	1 cut(s)	473
SalI	GTCGAC	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	763
Sau3AI	GATC	1 cut(s)	267
Sau96I	GGNCC	4 cut(s)	165, 205, 448, 745
SchI	GAGTC	7 cut(s)	53, 119, 338, 389, 599, 608, 614
ScrFI	CCNGG	8 cut(s)	98, 99, 120, 169, 191, 253, 376, 575
SduI	GDGCHC	2 cut(s)	252, 313
SetI	ASST	7 cut(s)	56, 284, 321, 549, 567, 587, 750
SfcI	CTRYAG	1 cut(s)	196
Sfr303I	CCGCGG	1 cut(s)	473
SgrBI	CCGCGG	1 cut(s)	473
SinI	GGWCC	3 cut(s)	205, 448, 745
SmaI	CCCGGG	1 cut(s)	99
Sse9I	AATT	1 cut(s)	700
StyD4I	CCNGG	8 cut(s)	96, 97, 118, 167, 189, 251, 374, 573
StyI	CCWWGG	1 cut(s)	444
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	2 cut(s)	47, 615
TasI	AATT	1 cut(s)	700
TfiI	GAWTC	1 cut(s)	262
Tru1I	TTAA	1 cut(s)	763
Tru9I	TTAA	1 cut(s)	763
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	114
TseI	GCWGC	5 cut(s)	156, 177, 180, 565, 649
Tsp45I	GTSAC	1 cut(s)	114
TspDTI	ATGAA	1 cut(s)	57
TspMI	CCCGGG	1 cut(s)	97
TspRI	CASTG	1 cut(s)	13
Tth111I	GACNNNGTC	1 cut(s)	493
VpaK11BI	GGWCC	3 cut(s)	205, 448, 745
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295
XmaI	CCCGGG	1 cut(s)	97
XmiI	GTMKAC	2 cut(s)	47, 195
ZraI	GACGTC	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.