Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004337

Physical Location & Seq

Genomic Coordinates Reverse (-)

8986542 .. 8987898

Gene Structure 1357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G25810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGATAGCTTCAGAGAGTACCAAGAGCTGGGAAGCTAGCGCAGTCAGACAAGAGAATGAAGAAGAGAAGAAGAAACCGGTTAAAGATTCCGGTAAGCATCCGGTTTATCGGGGTGTCCGAAAGAGGAACTGGGGAAAATGGGTGTCCGAGATACGTGAACCTAGGAAAAAATCCCGAATATGGCTAGGAACGTTTCCTTCCCCGGAGATGGCGGCGCGTGCACACGACGTAGCCGCTCTTAGCATCAAAGGAGCCTCCGCTATACTCAATTTCCCTGACCTAGCCGGCTCTTTCCCACGCCCTAGCTCGCTTAGCCCTCGAGACATCCAGGTCGCGGCTCTCAAAGCCGCACACATGGAGACCTCACAGTCTTTTTCTTCTTCTTCTTCTTTAACGTTTTCATCTTCACAGTCTTCTTCTTCGCTAGAGTCTCTCGTGTCTTCCTCCGCGACCGGCTCCGAGGAGCTAGGGGAGATTGTAGAGCTCCCAAGTTTGGGATCGAGCTATGATGGTTTGACTCAGCTAGGTAACGAGTTTATATTCTCTGACTCCGCAGACTTATGGCCTTATCCACCGCAATGGTCAGAAGGTGATTACCAAATGATTCCTGCCTCGTTATCACAAGATTGGGATCTTCAAGGACTGTATAATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

218

Amino Acids

23.94

Weight (kDa)

5.32

Isoelectric Point (pI)

59.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	34 - 84	4.8e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11590 AT5G25810
fragaria_vesca	FvH4_1g05820 FvH4_2g35620
malus_domestica	MD02G1060200.v1.1 MD08G1114100.v1.1 MD15G1093800.v1.1 MD15G1193700.v1.1
prunus_persica	Prupe.1G448600_v2.0.a1 Prupe.7G222700_v2.0.a1
pyrus_communis	pycom02g04920 pycom08g09510 pycom15g17340
rosa_chinensis	RchiOBHm_Chr2g0091471 RchiOBHm_Chr6g0306191
rosa_laevigata	RLG00000010815 RLG00000016227
rosa_multiflora	Rmu_sc0002407.1_g000015 Rmu_sc0003594.1_g000007
rosa_roxburghii	Rroxscaffold_2G00150040 Rroxscaffold_7G00161970
rosa_rugosa	Rorug02G0018200 Rorug06G0347800
rosa_samantha	Rh2BG062600 Rh2CG064300 Rh2DG062700 Rh6AG460400 Rh6BG441000 Rh6CG474400 Rh6DG460700
rosa_wichuraiana	Rw2G005700 Rw6G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	329, 367
AccB7I	CCANNNNNTGG	1 cut(s)	27
AccBSI	CCGCTC	1 cut(s)	236
AccII	CGCG	3 cut(s)	217, 335, 449
AciI	CCGC	8 cut(s)	212, 234, 258, 335, 348, 447, 552, 575
AclI	AACGTT	2 cut(s)	191, 395
AclWI	GGATC	2 cut(s)	505, 639
AfaI	GTAC	1 cut(s)	19
AfiI	CCNNNNNNNGG	6 cut(s)	27, 180, 208, 334, 493, 494
AgeI	ACCGGT	1 cut(s)	76
AgsI	TTSAA	1 cut(s)	638
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	8 cut(s)	8, 27, 35, 306, 466, 484, 504, 523
AluI	AGCT	8 cut(s)	8, 27, 35, 306, 466, 484, 504, 523
Alw21I	GWGCWC	2 cut(s)	223, 486
Alw26I	GTCTC	3 cut(s)	315, 353, 435
Alw44I	GTGCAC	1 cut(s)	219
AlwI	GGATC	2 cut(s)	505, 639
Ama87I	CYCGRG	1 cut(s)	318
AoxI	GGCC	1 cut(s)	563
ApaLI	GTGCAC	1 cut(s)	219
AsiGI	ACCGGT	1 cut(s)	76
AspA2I	CCTAGG	1 cut(s)	161
AspLEI	GCGC	2 cut(s)	41, 217
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	602
AsuNHI	GCTAGC	1 cut(s)	35
AvaI	CYCGRG	1 cut(s)	318
AvrII	CCTAGG	1 cut(s)	161
BaeGI	GKGCMC	1 cut(s)	223
BanII	GRGCYC	1 cut(s)	486
BauI	CACGAG	1 cut(s)	434
BbsI	GAAGAC	2 cut(s)	405, 432
Bbv12I	GWGCWC	2 cut(s)	223, 486
BccI	CCATC	2 cut(s)	202, 503
BciT130I	CCWGG	1 cut(s)	329
BcnI	CCSGG	1 cut(s)	203
BcoDI	GTCTC	3 cut(s)	315, 353, 435
BfaI	CTAG	8 cut(s)	36, 162, 185, 281, 303, 425, 467, 524
BisI	GCNGC	4 cut(s)	213, 234, 336, 348
BlnI	CCTAGG	1 cut(s)	161
BlpI	GCTNAGC	1 cut(s)	311
BlsI	GCNGC	4 cut(s)	214, 235, 337, 349
Bme1390I	CCNGG	2 cut(s)	203, 329
BmeT110I	CYCGRG	1 cut(s)	318
BmiI	GGNNCC	2 cut(s)	253, 457
BmrFI	CCNGG	2 cut(s)	203, 329
BmrI	ACTGGG	1 cut(s)	139
BmsI	GCATC	2 cut(s)	106, 252
BmtI	GCTAGC	1 cut(s)	39
BmuI	ACTGGG	1 cut(s)	139
BpiI	GAAGAC	2 cut(s)	405, 432
Bpu1102I	GCTNAGC	1 cut(s)	311
BpuMI	CCSGG	1 cut(s)	203
BsaAI	YACGTR	1 cut(s)	155
BsaBI	GATNNNNATC	1 cut(s)	630
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	3 cut(s)	161, 201, 459
BsaWI	WCCGGW	3 cut(s)	76, 89, 100
Bsc4I	CCNNNNNNNGG	6 cut(s)	27, 180, 208, 334, 493, 494
Bse118I	RCCGGY	3 cut(s)	76, 284, 452
Bse1I	ACTGG	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	584
Bse8I	GATNNNNATC	1 cut(s)	630
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	3 cut(s)	161, 201, 459
BseGI	GGATG	2 cut(s)	97, 324
BseJI	GATNNNNATC	1 cut(s)	630
BseLI	CCNNNNNNNGG	6 cut(s)	27, 180, 208, 334, 493, 494
BseMI	GCAATG	1 cut(s)	584
BseMII	CTCAG	1 cut(s)	533
BseNI	ACTGG	1 cut(s)	134
BseRI	GAGGAG	1 cut(s)	476
BseSI	GKGCMC	1 cut(s)	223
BseYI	CCCAGC	1 cut(s)	27
Bsh1236I	CGCG	3 cut(s)	217, 335, 449
Bsh1285I	CGRYCG	1 cut(s)	453
BshFI	GGCC	1 cut(s)	565
BshTI	ACCGGT	1 cut(s)	76
BsiEI	CGRYCG	1 cut(s)	453
BsiHKAI	GWGCWC	2 cut(s)	223, 486
BsiHKCI	CYCGRG	1 cut(s)	318
BsiSI	CCGG	6 cut(s)	77, 90, 101, 203, 285, 453
BslI	CCNNNNNNNGG	6 cut(s)	27, 180, 208, 334, 493, 494
BsmAI	GTCTC	3 cut(s)	315, 353, 435
BsnI	GGCC	1 cut(s)	565
Bso31I	GGTCTC	1 cut(s)	353
BsoBI	CYCGRG	1 cut(s)	318
Bsp1286I	GDGCHC	2 cut(s)	223, 486
Bsp143I	GATC	2 cut(s)	497, 631
Bsp1720I	GCTNAGC	1 cut(s)	311
BspACI	CCGC	8 cut(s)	212, 234, 258, 335, 348, 447, 552, 575
BspANI	GGCC	1 cut(s)	565
BspCNI	CTCAG	1 cut(s)	532
BspFNI	CGCG	3 cut(s)	217, 335, 449
BspLI	GGNNCC	2 cut(s)	253, 457
BspOI	GCTAGC	1 cut(s)	39
BspPI	GGATC	2 cut(s)	505, 639
BspTNI	GGTCTC	1 cut(s)	353
BsrBI	CCGCTC	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	584
BsrFI	RCCGGY	3 cut(s)	76, 284, 452
BsrI	ACTGG	1 cut(s)	134
BssAI	RCCGGY	3 cut(s)	76, 284, 452
BssECI	CCNNGG	3 cut(s)	161, 201, 459
BssMI	GATC	2 cut(s)	497, 631
BssSI	CACGAG	1 cut(s)	434
BssT1I	CCWWGG	1 cut(s)	161
Bst2BI	CACGAG	1 cut(s)	434
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	3 cut(s)	369, 411, 645
Bst6I	CTCTTC	1 cut(s)	57
BstBAI	YACGTR	1 cut(s)	155
BstC8I	GCNNGC	4 cut(s)	37, 219, 286, 308
BstDEI	CTNAG	3 cut(s)	239, 311, 519
BstF5I	GGATG	2 cut(s)	97, 324
BstFNI	CGCG	3 cut(s)	217, 335, 449
BstHHI	GCGC	2 cut(s)	41, 217
BstKTI	GATC	2 cut(s)	500, 634
BstMAI	GTCTC	3 cut(s)	315, 353, 435
BstMBI	GATC	2 cut(s)	497, 631
BstMCI	CGRYCG	1 cut(s)	453
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 312, 344
BstNI	CCWGG	1 cut(s)	329
BstSCI	CCNGG	2 cut(s)	201, 327
BstSLI	GKGCMC	1 cut(s)	223
BstUI	CGCG	3 cut(s)	217, 335, 449
BstV2I	GAAGAC	2 cut(s)	405, 432
BstX2I	RGATCY	1 cut(s)	631
BstXI	CCANNNNNNTGG	1 cut(s)	579
BstYI	RGATCY	1 cut(s)	631
BsuRI	GGCC	1 cut(s)	565
BtsCI	GGATG	2 cut(s)	97, 324
Cac8I	GCNNGC	4 cut(s)	37, 219, 286, 308
CfoI	GCGC	2 cut(s)	41, 217
Cfr10I	RCCGGY	3 cut(s)	76, 284, 452
Csp6I	GTAC	1 cut(s)	18
CspAI	ACCGGT	1 cut(s)	76
CviAII	CATG	1 cut(s)	355
CviQI	GTAC	1 cut(s)	18
DdeI	CTNAG	3 cut(s)	239, 311, 519
DpnI	GATC	2 cut(s)	499, 633
DpnII	GATC	2 cut(s)	497, 631
DrdI	GACNNNNNNGTC	2 cut(s)	329, 367
DseDI	GACNNNNNNGTC	2 cut(s)	329, 367
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Ecl136II	GAGCTC	1 cut(s)	484
Eco130I	CCWWGG	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	486
Eco31I	GGTCTC	1 cut(s)	353
Eco53kI	GAGCTC	1 cut(s)	484
Eco88I	CYCGRG	1 cut(s)	318
EcoICRI	GAGCTC	1 cut(s)	484
EcoRII	CCWGG	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	161
EcoT38I	GRGCYC	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	161
FaeI	CATG	1 cut(s)	358
FaiI	YATR	7 cut(s)	181, 263, 356, 507, 539, 562, 648
FatI	CATG	1 cut(s)	354
Fnu4HI	GCNGC	4 cut(s)	213, 234, 336, 348
FokI	GGATG	2 cut(s)	84, 311
FriOI	GRGCYC	1 cut(s)	486
Fsp4HI	GCNGC	4 cut(s)	213, 234, 336, 348
FspBI	CTAG	8 cut(s)	36, 162, 185, 281, 303, 425, 467, 524
GlaI	GCGC	2 cut(s)	40, 216
GluI	GCNGC	4 cut(s)	213, 234, 336, 348
GsaI	CCCAGC	1 cut(s)	31
HaeIII	GGCC	1 cut(s)	565
HapII	CCGG	6 cut(s)	77, 90, 101, 203, 285, 453
HhaI	GCGC	2 cut(s)	41, 217
Hin1II	CATG	1 cut(s)	358
Hin6I	GCGC	2 cut(s)	39, 215
HinP1I	GCGC	2 cut(s)	39, 215
HinfI	GANTC	5 cut(s)	86, 428, 517, 548, 604
HpaII	CCGG	6 cut(s)	77, 90, 101, 203, 285, 453
HphI	GGTGA	1 cut(s)	602
Hpy166II	GTNNAC	2 cut(s)	158, 221
Hpy188I	TCNGA	7 cut(s)	13, 47, 119, 148, 460, 547, 586
Hpy188III	TCNNGA	2 cut(s)	174, 320
Hpy8I	GTNNAC	2 cut(s)	158, 221
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	2 cut(s)	207, 581
HpyCH4III	ACNGT	3 cut(s)	369, 411, 645
HpyCH4IV	ACGT	4 cut(s)	154, 191, 228, 395
HpyCH4V	TGCA	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 312, 344
HpyF3I	CTNAG	3 cut(s)	239, 311, 519
HpySE526I	ACGT	4 cut(s)	154, 191, 228, 395
Hsp92II	CATG	1 cut(s)	358
HspAI	GCGC	2 cut(s)	39, 215
KroI	GCCGGC	1 cut(s)	284
KroNI	GCCGGC	1 cut(s)	286
Kzo9I	GATC	2 cut(s)	497, 631
LmnI	GCTCC	4 cut(s)	251, 461, 463, 489
LweI	GCATC	2 cut(s)	106, 252
MaeI	CTAG	8 cut(s)	36, 162, 185, 281, 303, 425, 467, 524
MaeII	ACGT	4 cut(s)	154, 191, 228, 395
MaeIII	GTNAC	1 cut(s)	527
MalI	GATC	2 cut(s)	499, 633
MbiI	CCGCTC	1 cut(s)	236
MboI	GATC	2 cut(s)	497, 631
MflI	RGATCY	1 cut(s)	631
MhlI	GDGCHC	2 cut(s)	223, 486
MluCI	AATT	2 cut(s)	268, 649
MlyI	GAGTC	3 cut(s)	437, 511, 542
MnlI	CCTC	7 cut(s)	117, 265, 327, 373, 454, 454, 622
MroNI	GCCGGC	1 cut(s)	284
MseI	TTAA	3 cut(s)	81, 392, 655
MslI	CAYNNNNRTG	1 cut(s)	577
MspI	CCGG	6 cut(s)	77, 90, 101, 203, 285, 453
MspR9I	CCNGG	2 cut(s)	203, 329
MvaI	CCWGG	1 cut(s)	329
MvnI	CGCG	3 cut(s)	217, 335, 449
MwoI	GCNNNNNNNGC	3 cut(s)	218, 312, 344
NaeI	GCCGGC	1 cut(s)	286
NciI	CCSGG	1 cut(s)	203
NdeII	GATC	2 cut(s)	497, 631
NgoMIV	GCCGGC	1 cut(s)	284
NheI	GCTAGC	1 cut(s)	35
NlaIII	CATG	1 cut(s)	358
NlaIV	GGNNCC	2 cut(s)	253, 457
PaeR7I	CTCGAG	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	1 cut(s)	115
PdiI	GCCGGC	1 cut(s)	286
PfeI	GAWTC	2 cut(s)	86, 604
PflMI	CCANNNNNTGG	1 cut(s)	27
PinAI	ACCGGT	1 cut(s)	76
PkrI	GCNGC	4 cut(s)	214, 235, 337, 349
PleI	GAGTC	3 cut(s)	436, 511, 542
PpsI	GAGTC	3 cut(s)	436, 511, 542
Ppu21I	YACGTR	1 cut(s)	155
Psp124BI	GAGCTC	1 cut(s)	486
Psp1406I	AACGTT	2 cut(s)	191, 395
Psp6I	CCWGG	1 cut(s)	327
PspFI	CCCAGC	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	327
PspN4I	GGNNCC	2 cut(s)	253, 457
PsuI	RGATCY	1 cut(s)	631
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
RseI	CAYNNNNRTG	1 cut(s)	577
SacI	GAGCTC	1 cut(s)	486
SaqAI	TTAA	3 cut(s)	81, 392, 655
SatI	GCNGC	4 cut(s)	213, 234, 336, 348
Sau3AI	GATC	2 cut(s)	497, 631
SchI	GAGTC	3 cut(s)	437, 511, 542
ScrFI	CCNGG	2 cut(s)	203, 329
SduI	GDGCHC	2 cut(s)	223, 486
SfaNI	GCATC	2 cut(s)	106, 252
Sfr274I	CTCGAG	1 cut(s)	318
SlaI	CTCGAG	1 cut(s)	318
SmiMI	CAYNNNNRTG	1 cut(s)	577
SmlI	CTYRAG	1 cut(s)	318
SmoI	CTYRAG	1 cut(s)	318
Sse9I	AATT	2 cut(s)	268, 649
SsiI	CCGC	8 cut(s)	212, 234, 258, 335, 348, 447, 552, 575
SspMI	CTAG	8 cut(s)	36, 162, 185, 281, 303, 425, 467, 524
SstI	GAGCTC	1 cut(s)	486
StyD4I	CCNGG	2 cut(s)	201, 327
StyI	CCWWGG	1 cut(s)	161
TaaI	ACNGT	3 cut(s)	369, 411, 645
TaiI	ACGT	4 cut(s)	157, 194, 231, 398
TaqI	TCGA	2 cut(s)	319, 500
TasI	AATT	2 cut(s)	268, 649
TauI	GCSGC	4 cut(s)	215, 236, 338, 350
TfiI	GAWTC	2 cut(s)	86, 604
Tru1I	TTAA	3 cut(s)	81, 392, 655
Tru9I	TTAA	3 cut(s)	81, 392, 655
TspDTI	ATGAA	2 cut(s)	72, 390
Van91I	CCANNNNNTGG	1 cut(s)	27
VneI	GTGCAC	1 cut(s)	219
XhoI	CTCGAG	1 cut(s)	318
XmaJI	CCTAGG	1 cut(s)	161
XspI	CTAG	8 cut(s)	36, 162, 185, 281, 303, 425, 467, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.