Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004337

Physical Location & Seq

Genomic Coordinates Forward (+)

4815948 .. 4816775

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1060200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCTGACCCAACTCACTCGGAGACCGAGTCGAGCTTCAACTCCTCCTCACACTCCCCTCCTTCCCCGTCCTCATCTGGGTTTTCCCACTCCATTCCGAACCCCGGTCAAAATCCACTTCGCGAAATGTCCAACTCGCCAGACCCGGATCAGAAGCGGGCCAGAGAAACCAGCAGCAAGCACCCGGTTTACAGAGGGGTCCGAATGCGGACATGGGGCAAGTGGGTGTCAGAAATCCGCGAGCCCAGGAAGAAGAGTCGGATCTGGCTCGGTACATTCTCGACACCCGAAATGGCCGCGCGTGCCCACGACGTGGCAGCGCTGACCATCAAAGGCAACTCCGCGATCCTCAACTTCCCCGGACTCGTCGGGTTGCTGCCTCGACCCGACTCGAACTCTCCCCGGGACATACAAGCCGCGGCTGCCAAAGCCGCTTCCATGGAAACTCTAAACACGCCGCCTCCTCCACCGTCGCAGTCGTCTTCGTCGTCGTCGTCAGCATTGTCACAGTCCTCACCATCATCCTCAACGGTGGGTGCGACAAGTACGAGCGAGGACGCAGGAACGCCGGAGGAGCTGGAGGAGATAGTGGAGCTGCCAAGCCTGGGAACGAGCTACGAGTCGGCCGAGTCGGGGAGCGAGCTCGTGTTTGCTGATTCGGTGGAGGGGTGGCTGTATCCTCCGCCGTGGTGGCACAACAGTTATTTCGAGGAAGATTATGGGTATAATAGTCTTATCAACAGTTTTATTAGGGATGATCAAATGTTAATGCCTGAACCACCAGCTGCCGAGTGTGTTGAAGTTGAGGCCTTATTGTGGCATCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

276

Amino Acids

29.87

Weight (kDa)

4.9

Isoelectric Point (pI)

66.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	62 - 112	5.2e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11590 AT5G25810
fragaria_vesca	FvH4_1g05820 FvH4_2g35620
malus_domestica	MD02G1060200.v1.1 MD08G1114100.v1.1 MD15G1093800.v1.1 MD15G1193700.v1.1
prunus_persica	Prupe.1G448600_v2.0.a1 Prupe.7G222700_v2.0.a1
pyrus_communis	pycom02g04920 pycom08g09510 pycom15g17340
rosa_chinensis	RchiOBHm_Chr2g0091471 RchiOBHm_Chr6g0306191
rosa_laevigata	RLG00000010815 RLG00000016227
rosa_multiflora	Rmu_sc0002407.1_g000015 Rmu_sc0003594.1_g000007
rosa_roxburghii	Rroxscaffold_2G00150040 Rroxscaffold_7G00161970
rosa_rugosa	Rorug02G0018200 Rorug06G0347800
rosa_samantha	Rh2BG062600 Rh2CG064300 Rh2DG062700 Rh6AG460400 Rh6BG441000 Rh6CG474400 Rh6DG460700
rosa_wichuraiana	Rw2G005700 Rw6G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	313
AccII	CGCG	6 cut(s)	123, 240, 299, 301, 344, 419
AclWI	GGATC	3 cut(s)	156, 269, 340
AcoI	YGGCCR	2 cut(s)	294, 624
AdeI	CACNNNGTG	1 cut(s)	313
AfaI	GTAC	2 cut(s)	274, 547
AfeI	AGCGCT	1 cut(s)	321
AfiI	CCNNNNNNNGG	6 cut(s)	78, 104, 313, 605, 633, 816
AgsI	TTSAA	2 cut(s)	40, 800
AjiI	CACGTC	1 cut(s)	313
AjnI	CCWGG	2 cut(s)	245, 603
AluBI	AGCT	6 cut(s)	36, 577, 595, 615, 643, 785
AluI	AGCT	6 cut(s)	36, 577, 595, 615, 643, 785
Alw21I	GWGCWC	1 cut(s)	645
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	3 cut(s)	156, 269, 340
Ama87I	CYCGRG	1 cut(s)	402
Aor51HI	AGCGCT	1 cut(s)	321
AoxI	GGCC	4 cut(s)	159, 294, 624, 807
ApeKI	GCWGC	6 cut(s)	174, 317, 376, 422, 595, 785
AspLEI	GCGC	2 cut(s)	301, 322
AspS9I	GGNCC	2 cut(s)	159, 199
AsuC2I	CCSGG	6 cut(s)	105, 146, 185, 360, 403, 404
AsuHPI	GGTGA	1 cut(s)	507
AvaI	CYCGRG	1 cut(s)	402
AvaII	GGWCC	1 cut(s)	199
BaeGI	GKGCMC	1 cut(s)	307
BanII	GRGCYC	2 cut(s)	246, 645
BauI	CACGAG	1 cut(s)	644
BbsI	GAAGAC	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	645
BbvI	GCAGC	6 cut(s)	186, 329, 363, 409, 582, 772
BccI	CCATC	2 cut(s)	335, 526
BceAI	ACGGC	1 cut(s)	670
BciT130I	CCWGG	2 cut(s)	247, 605
BciVI	GTATCC	1 cut(s)	687
BclI	TGATCA	1 cut(s)	757
BcnI	CCSGG	6 cut(s)	105, 146, 185, 360, 403, 404
BcoDI	GTCTC	1 cut(s)	17
BfoI	RGCGCY	1 cut(s)	323
BfuI	GTATCC	1 cut(s)	687
BglI	GCCNNNNNGGC	1 cut(s)	691
Bme1390I	CCNGG	8 cut(s)	105, 146, 185, 247, 360, 403, 404, 605
Bme18I	GGWCC	1 cut(s)	199
BmeT110I	CYCGRG	1 cut(s)	402
BmgBI	CACGTC	1 cut(s)	313
BmgT120I	GGNCC	2 cut(s)	159, 199
BmiI	GGNNCC	1 cut(s)	200
BmrFI	CCNGG	8 cut(s)	105, 146, 185, 247, 360, 403, 404, 605
BpiI	GAAGAC	1 cut(s)	474
BpmI	CTGGAG	1 cut(s)	599
BpuMI	CCSGG	6 cut(s)	105, 146, 185, 360, 403, 404
BsaI	GGTCTC	1 cut(s)	17
BsaJI	CCNNGG	9 cut(s)	103, 245, 358, 401, 402, 417, 438, 604, 686
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 445, 475
Bsc4I	CCNNNNNNNGG	6 cut(s)	78, 104, 313, 605, 633, 816
BseBI	CCWGG	2 cut(s)	247, 605
BseDI	CCNNGG	9 cut(s)	103, 245, 358, 401, 402, 417, 438, 604, 686
BseGI	GGATG	2 cut(s)	521, 760
BseLI	CCNNNNNNNGG	6 cut(s)	78, 104, 313, 605, 633, 816
BseRI	GAGGAG	5 cut(s)	34, 37, 453, 587, 596
BseSI	GKGCMC	1 cut(s)	307
BseX3I	CGGCCG	1 cut(s)	624
BseXI	GCAGC	6 cut(s)	186, 329, 363, 409, 582, 772
Bsh1236I	CGCG	6 cut(s)	123, 240, 299, 301, 344, 419
Bsh1285I	CGRYCG	1 cut(s)	627
BshFI	GGCC	4 cut(s)	161, 296, 626, 809
BsiEI	CGRYCG	1 cut(s)	627
BsiHKAI	GWGCWC	1 cut(s)	645
BsiHKCI	CYCGRG	1 cut(s)	402
BsiSI	CCGG	6 cut(s)	105, 146, 185, 360, 403, 569
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	6 cut(s)	78, 104, 313, 605, 633, 816
BsmAI	GTCTC	1 cut(s)	17
BsmFI	GGGAC	1 cut(s)	419
BsmI	GAATGC	1 cut(s)	210
BsnI	GGCC	4 cut(s)	161, 296, 626, 809
Bso31I	GGTCTC	1 cut(s)	17
BsoBI	CYCGRG	1 cut(s)	402
Bsp1286I	GDGCHC	3 cut(s)	246, 307, 645
Bsp143I	GATC	4 cut(s)	148, 261, 345, 757
Bsp19I	CCATGG	1 cut(s)	438
Bsp68I	TCGCGA	1 cut(s)	123
BspANI	GGCC	4 cut(s)	161, 296, 626, 809
BspFNI	CGCG	6 cut(s)	123, 240, 299, 301, 344, 419
BspLI	GGNNCC	1 cut(s)	200
BspPI	GGATC	3 cut(s)	156, 269, 340
BspTNI	GGTCTC	1 cut(s)	17
BssECI	CCNNGG	9 cut(s)	103, 245, 358, 401, 402, 417, 438, 604, 686
BssMI	GATC	4 cut(s)	148, 261, 345, 757
BssSI	CACGAG	1 cut(s)	644
BssT1I	CCWWGG	1 cut(s)	438
Bst2BI	CACGAG	1 cut(s)	644
Bst2UI	CCWGG	2 cut(s)	247, 605
Bst4CI	ACNGT	5 cut(s)	471, 510, 532, 701, 743
Bst6I	CTCTTC	1 cut(s)	248
BstC8I	GCNNGC	5 cut(s)	159, 179, 242, 303, 641
BstDSI	CCRYGG	3 cut(s)	417, 438, 686
BstF5I	GGATG	2 cut(s)	521, 760
BstFNI	CGCG	6 cut(s)	123, 240, 299, 301, 344, 419
BstH2I	RGCGCY	1 cut(s)	323
BstHHI	GCGC	2 cut(s)	301, 322
BstKTI	GATC	4 cut(s)	151, 264, 348, 760
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	4 cut(s)	148, 261, 345, 757
BstMCI	CGRYCG	1 cut(s)	627
BstMWI	GCNNNNNNNGC	6 cut(s)	302, 422, 428, 431, 574, 691
BstNI	CCWGG	2 cut(s)	247, 605
BstSCI	CCNGG	8 cut(s)	103, 144, 183, 245, 358, 401, 402, 603
BstSLI	GKGCMC	1 cut(s)	307
BstUI	CGCG	6 cut(s)	123, 240, 299, 301, 344, 419
BstV1I	GCAGC	6 cut(s)	186, 329, 363, 409, 582, 772
BstV2I	GAAGAC	1 cut(s)	474
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BstZI	CGGCCG	1 cut(s)	624
BsuI	GTATCC	1 cut(s)	687
BsuRI	GGCC	4 cut(s)	161, 296, 626, 809
BtgI	CCRYGG	3 cut(s)	417, 438, 686
BtrI	CACGTC	1 cut(s)	313
BtsCI	GGATG	2 cut(s)	521, 760
BtuMI	TCGCGA	1 cut(s)	123
Cac8I	GCNNGC	5 cut(s)	159, 179, 242, 303, 641
CfoI	GCGC	2 cut(s)	301, 322
Cfr13I	GGNCC	2 cut(s)	159, 199
Cfr42I	CCGCGG	1 cut(s)	420
Cfr9I	CCCGGG	1 cut(s)	402
CseI	GACGC	1 cut(s)	566
Csp6I	GTAC	2 cut(s)	273, 546
CviAII	CATG	2 cut(s)	213, 439
CviQI	GTAC	2 cut(s)	273, 546
DpnI	GATC	4 cut(s)	150, 263, 347, 759
DpnII	GATC	4 cut(s)	148, 261, 345, 757
DraIII	CACNNNGTG	1 cut(s)	313
EaeI	YGGCCR	2 cut(s)	294, 624
EagI	CGGCCG	1 cut(s)	624
Eam1104I	CTCTTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	248
EciI	GGCGGA	1 cut(s)	672
Ecl136II	GAGCTC	1 cut(s)	643
EclXI	CGGCCG	1 cut(s)	624
Eco130I	CCWWGG	1 cut(s)	438
Eco147I	AGGCCT	1 cut(s)	809
Eco24I	GRGCYC	2 cut(s)	246, 645
Eco31I	GGTCTC	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	199
Eco47III	AGCGCT	1 cut(s)	321
Eco52I	CGGCCG	1 cut(s)	624
Eco53kI	GAGCTC	1 cut(s)	643
Eco88I	CYCGRG	1 cut(s)	402
EcoICRI	GAGCTC	1 cut(s)	643
EcoRII	CCWGG	2 cut(s)	245, 603
EcoT14I	CCWWGG	1 cut(s)	438
EcoT38I	GRGCYC	2 cut(s)	246, 645
ErhI	CCWWGG	1 cut(s)	438
FaeI	CATG	2 cut(s)	216, 442
FaiI	YATR	5 cut(s)	214, 410, 440, 720, 726
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	2 cut(s)	212, 438
FauI	CCCGC	1 cut(s)	150
FbaI	TGATCA	1 cut(s)	757
FokI	GGATG	2 cut(s)	508, 767
FriOI	GRGCYC	2 cut(s)	246, 645
GlaI	GCGC	2 cut(s)	300, 321
GsuI	CTGGAG	1 cut(s)	599
HaeII	RGCGCY	1 cut(s)	323
HaeIII	GGCC	4 cut(s)	161, 296, 626, 809
HapII	CCGG	6 cut(s)	105, 146, 185, 360, 403, 569
HgaI	GACGC	1 cut(s)	566
HhaI	GCGC	2 cut(s)	301, 322
Hin1II	CATG	2 cut(s)	216, 442
Hin6I	GCGC	2 cut(s)	299, 320
HinP1I	GCGC	2 cut(s)	299, 320
HinfI	GANTC	7 cut(s)	29, 256, 363, 389, 620, 629, 656
HpaII	CCGG	6 cut(s)	105, 146, 185, 360, 403, 569
HphI	GGTGA	1 cut(s)	507
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	6 cut(s)	22, 99, 153, 203, 232, 261
Hpy188III	TCNNGA	2 cut(s)	122, 280
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	6 cut(s)	314, 371, 475, 490, 493, 496
HpyAV	CCTTC	1 cut(s)	72
HpyCH4III	ACNGT	5 cut(s)	471, 510, 532, 701, 743
HpyCH4IV	ACGT	1 cut(s)	312
HpyF10VI	GCNNNNNNNGC	6 cut(s)	302, 422, 428, 431, 574, 691
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	2 cut(s)	216, 442
HspAI	GCGC	2 cut(s)	299, 320
Ksp22I	TGATCA	1 cut(s)	757
KspI	CCGCGG	1 cut(s)	420
Kzo9I	GATC	4 cut(s)	148, 261, 345, 757
LmnI	GCTCC	3 cut(s)	574, 592, 636
Lsp1109I	GCAGC	6 cut(s)	186, 329, 363, 409, 582, 772
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	504
MalI	GATC	4 cut(s)	150, 263, 347, 759
MboI	GATC	4 cut(s)	148, 261, 345, 757
MboII	GAAGA	4 cut(s)	262, 265, 474, 725
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	3 cut(s)	246, 307, 645
MlyI	GAGTC	6 cut(s)	38, 265, 357, 383, 629, 638
MmeI	TCCRAC	2 cut(s)	156, 239
MseI	TTAA	2 cut(s)	767, 826
MspA1I	CMGCKG	2 cut(s)	419, 785
MspI	CCGG	6 cut(s)	105, 146, 185, 360, 403, 569
MspR9I	CCNGG	8 cut(s)	105, 146, 185, 247, 360, 403, 404, 605
Mva1269I	GAATGC	1 cut(s)	210
MvaI	CCWGG	2 cut(s)	247, 605
MvnI	CGCG	6 cut(s)	123, 240, 299, 301, 344, 419
MwoI	GCNNNNNNNGC	6 cut(s)	302, 422, 428, 431, 574, 691
NciI	CCSGG	6 cut(s)	105, 146, 185, 360, 403, 404
NcoI	CCATGG	1 cut(s)	438
NdeII	GATC	4 cut(s)	148, 261, 345, 757
NlaIII	CATG	2 cut(s)	216, 442
NlaIV	GGNNCC	1 cut(s)	200
NmeAIII	GCCGAG	2 cut(s)	652, 814
NmuCI	GTSAC	1 cut(s)	504
NruI	TCGCGA	1 cut(s)	123
PceI	AGGCCT	1 cut(s)	809
PcsI	WCGNNNNNNNCGW	4 cut(s)	485, 491, 536, 624
PctI	GAATGC	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	656
PflFI	GACNNNGTC	1 cut(s)	28
PflMI	CCANNNNNTGG	1 cut(s)	313
PleI	GAGTC	6 cut(s)	37, 264, 357, 383, 628, 637
PpsI	GAGTC	6 cut(s)	37, 264, 357, 383, 628, 637
Psp124BI	GAGCTC	1 cut(s)	645
Psp6I	CCWGG	2 cut(s)	245, 603
PspGI	CCWGG	2 cut(s)	245, 603
PspN4I	GGNNCC	1 cut(s)	200
PspPI	GGNCC	2 cut(s)	159, 199
PsuI	RGATCY	1 cut(s)	261
PsyI	GACNNNGTC	1 cut(s)	28
PvuII	CAGCTG	1 cut(s)	785
RruI	TCGCGA	1 cut(s)	123
RsaI	GTAC	2 cut(s)	274, 547
RsaNI	GTAC	2 cut(s)	273, 546
SacI	GAGCTC	1 cut(s)	645
SacII	CCGCGG	1 cut(s)	420
SaqAI	TTAA	2 cut(s)	767, 826
Sau3AI	GATC	4 cut(s)	148, 261, 345, 757
Sau96I	GGNCC	2 cut(s)	159, 199
SchI	GAGTC	6 cut(s)	38, 265, 357, 383, 629, 638
ScrFI	CCNGG	8 cut(s)	105, 146, 185, 247, 360, 403, 404, 605
SduI	GDGCHC	3 cut(s)	246, 307, 645
SetI	ASST	7 cut(s)	38, 315, 579, 597, 617, 645, 787
Sfr303I	CCGCGG	1 cut(s)	420
SgrBI	CCGCGG	1 cut(s)	420
SinI	GGWCC	1 cut(s)	199
SmaI	CCCGGG	1 cut(s)	404
SseBI	AGGCCT	1 cut(s)	809
SstI	GAGCTC	1 cut(s)	645
StuI	AGGCCT	1 cut(s)	809
StyD4I	CCNGG	8 cut(s)	103, 144, 183, 245, 358, 401, 402, 603
StyI	CCWWGG	1 cut(s)	438
TaaI	ACNGT	5 cut(s)	471, 510, 532, 701, 743
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	5 cut(s)	32, 281, 382, 392, 708
TaqII	GACCGA	1 cut(s)	41
TauI	GCSGC	5 cut(s)	299, 419, 422, 434, 460
TfiI	GAWTC	1 cut(s)	656
Tru1I	TTAA	2 cut(s)	767, 826
Tru9I	TTAA	2 cut(s)	767, 826
TseFI	GTSAC	1 cut(s)	504
TseI	GCWGC	6 cut(s)	174, 317, 376, 422, 595, 785
Tsp45I	GTSAC	1 cut(s)	504
TspMI	CCCGGG	1 cut(s)	402
Tth111I	GACNNNGTC	1 cut(s)	28
Van91I	CCANNNNNTGG	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	199
XmaI	CCCGGG	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.