Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004337

Physical Location & Seq

Genomic Coordinates Forward (+)

3086932 .. 3088629

Gene Structure 1698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g05820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGACGAAAGACCCAACTCGCTCCGACACCACCACGGAGTCGACCAGCTTCAACTCCTCTTCATTCTCCTCCTCTCCTTGCTCGGGTCGGAATGGTGACCCGTTACCCGGAGGATCCGACCCGAGTGGGAATCGGGTCGGGAGCAAACGGGCGAGGGAGAGCAGCAGCAAGCACCCGGTTTACAGAGGGGTCCGAATGCGGGCGTGGGGCAAATGGGTATCCGAAATCCGCGAGCCCAGGAAGAAGAATCGGATCTGGCTCGGCACCTTCTCCACGCCCGAAATGGCGGCGCGTGCACACGACGTCGCCGCCTTGACCATCAAAGGCAACTCCGCCATCCTCAACTTCCCCACCCTATCCGGGTCCTTGCCCCGACCCGACTCCAATTCCCCCCGCGACATCCAGGCCGCCGCCGCCAAAGCCGCCTCCATGGAAAACCTAGACCCTCCGCCTCCTCAACCGCAACCGCCTTCCTCGGCATTGTCGCAATCGTCGTCGTCGTCGTCGTCGCTGGAGGTGACGGACGCCGGGACGCCGGAGGAGCTGGGGGAGATAGTGGAGCTGCCGAGGCTGGGGACGAGCTACGAGTCGGCCGAGTCGGGGAGCGATTTCGTGTTCGAGGACTCGGTGGAGGGGTGGCTGTACCCGCCGGCGCAACCGTGGTGGCAAAACGGTGAATTTGGAGAAGACTATGGGTATAGTAGGAATTTTAACGAAATGTTAATGGCCGAGGGTGGTGTTGAGGACCTGTTGTGGCAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

255

Amino Acids

27.53

Weight (kDa)

4.95

Isoelectric Point (pI)

50.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	59 - 109	6.7e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11590 AT5G25810
fragaria_vesca	FvH4_1g05820 FvH4_2g35620
malus_domestica	MD02G1060200.v1.1 MD08G1114100.v1.1 MD15G1093800.v1.1 MD15G1193700.v1.1
prunus_persica	Prupe.1G448600_v2.0.a1 Prupe.7G222700_v2.0.a1
pyrus_communis	pycom02g04920 pycom08g09510 pycom15g17340
rosa_chinensis	RchiOBHm_Chr2g0091471 RchiOBHm_Chr6g0306191
rosa_laevigata	RLG00000010815 RLG00000016227
rosa_multiflora	Rmu_sc0002407.1_g000015 Rmu_sc0003594.1_g000007
rosa_roxburghii	Rroxscaffold_2G00150040 Rroxscaffold_7G00161970
rosa_rugosa	Rorug02G0018200 Rorug06G0347800
rosa_samantha	Rh2BG062600 Rh2CG064300 Rh2DG062700 Rh6AG460400 Rh6BG441000 Rh6CG474400 Rh6DG460700
rosa_wichuraiana	Rw2G005700 Rw6G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	306
AccB1I	GGYRCC	1 cut(s)	263
AccI	GTMKAC	1 cut(s)	41
AccII	CGCG	3 cut(s)	231, 292, 396
AclWI	GGATC	3 cut(s)	108, 121, 260
AcoI	YGGCCR	2 cut(s)	591, 726
AcsI	RAATTY	2 cut(s)	677, 706
AcyI	GRCGYC	3 cut(s)	303, 525, 533
AfaI	GTAC	1 cut(s)	644
AfiI	CCNNNNNNNGG	6 cut(s)	83, 107, 199, 360, 572, 600
AgsI	TTSAA	1 cut(s)	52
AjnI	CCWGG	2 cut(s)	236, 402
AluBI	AGCT	4 cut(s)	48, 544, 562, 582
AluI	AGCT	4 cut(s)	48, 544, 562, 582
Alw21I	GWGCWC	1 cut(s)	298
Alw44I	GTGCAC	1 cut(s)	294
AlwI	GGATC	3 cut(s)	108, 121, 260
Ama87I	CYCGRG	2 cut(s)	82, 121
AoxI	GGCC	3 cut(s)	405, 591, 726
ApaLI	GTGCAC	1 cut(s)	294
ApeKI	GCWGC	3 cut(s)	162, 165, 562
ApoI	RAATTY	2 cut(s)	677, 706
AspLEI	GCGC	2 cut(s)	292, 655
AspS9I	GGNCC	3 cut(s)	190, 363, 745
AsuC2I	CCSGG	4 cut(s)	108, 176, 361, 529
AsuHPI	GGTGA	3 cut(s)	107, 529, 686
AvaI	CYCGRG	2 cut(s)	82, 121
AvaII	GGWCC	3 cut(s)	190, 363, 745
BaeGI	GKGCMC	1 cut(s)	298
BamHI	GGATCC	1 cut(s)	113
BanI	GGYRCC	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	693
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	3 cut(s)	174, 177, 549
BccI	CCATC	2 cut(s)	326, 344
BciT130I	CCWGG	2 cut(s)	238, 404
BciVI	GTATCC	1 cut(s)	229
BcnI	CCSGG	4 cut(s)	108, 176, 361, 529
BfaI	CTAG	1 cut(s)	440
BfuI	GTATCC	1 cut(s)	229
BisI	GCNGC	9 cut(s)	163, 166, 288, 309, 408, 411, 414, 423, 563
BlsI	GCNGC	9 cut(s)	164, 167, 289, 310, 409, 412, 415, 424, 564
Bme1390I	CCNGG	6 cut(s)	108, 176, 238, 361, 404, 529
Bme18I	GGWCC	3 cut(s)	190, 363, 745
BmeT110I	CYCGRG	2 cut(s)	82, 121
BmgT120I	GGNCC	3 cut(s)	190, 363, 745
BmiI	GGNNCC	4 cut(s)	115, 191, 265, 364
BmrFI	CCNGG	6 cut(s)	108, 176, 238, 361, 404, 529
BpiI	GAAGAC	1 cut(s)	693
BpmI	CTGGAG	1 cut(s)	533
BpuMI	CCSGG	4 cut(s)	108, 176, 361, 529
BsaHI	GRCGYC	3 cut(s)	303, 525, 533
BsaJI	CCNNGG	7 cut(s)	33, 236, 429, 474, 566, 659, 729
Bsc4I	CCNNNNNNNGG	6 cut(s)	83, 107, 199, 360, 572, 600
Bse118I	RCCGGY	1 cut(s)	649
BseBI	CCWGG	2 cut(s)	238, 404
BseDI	CCNNGG	7 cut(s)	33, 236, 429, 474, 566, 659, 729
BseGI	GGATG	2 cut(s)	336, 399
BseLI	CCNNNNNNNGG	6 cut(s)	83, 107, 199, 360, 572, 600
BseRI	GAGGAG	5 cut(s)	46, 58, 61, 444, 554
BseSI	GKGCMC	1 cut(s)	298
BseX3I	CGGCCG	1 cut(s)	591
BseXI	GCAGC	3 cut(s)	174, 177, 549
BseYI	CCCAGC	2 cut(s)	544, 571
Bsh1236I	CGCG	3 cut(s)	231, 292, 396
Bsh1285I	CGRYCG	1 cut(s)	594
BshFI	GGCC	3 cut(s)	407, 593, 728
BshNI	GGYRCC	1 cut(s)	263
BsiEI	CGRYCG	1 cut(s)	594
BsiHKAI	GWGCWC	1 cut(s)	298
BsiHKCI	CYCGRG	2 cut(s)	82, 121
BsiSI	CCGG	6 cut(s)	108, 176, 360, 528, 536, 650
BslFI	GGGAC	2 cut(s)	544, 589
BslI	CCNNNNNNNGG	6 cut(s)	83, 107, 199, 360, 572, 600
BsmFI	GGGAC	2 cut(s)	544, 589
BsmI	GAATGC	1 cut(s)	201
BsnI	GGCC	3 cut(s)	407, 593, 728
BsoBI	CYCGRG	2 cut(s)	82, 121
Bsp1286I	GDGCHC	2 cut(s)	237, 298
Bsp143I	GATC	2 cut(s)	113, 252
Bsp19I	CCATGG	1 cut(s)	429
BspANI	GGCC	3 cut(s)	407, 593, 728
BspFNI	CGCG	3 cut(s)	231, 292, 396
BspLI	GGNNCC	4 cut(s)	115, 191, 265, 364
BspPI	GGATC	3 cut(s)	108, 121, 260
BspT107I	GGYRCC	1 cut(s)	263
BsrFI	RCCGGY	1 cut(s)	649
BssAI	RCCGGY	1 cut(s)	649
BssECI	CCNNGG	7 cut(s)	33, 236, 429, 474, 566, 659, 729
BssMI	GATC	2 cut(s)	113, 252
BssNI	GRCGYC	3 cut(s)	303, 525, 533
BssT1I	CCWWGG	1 cut(s)	429
Bst2UI	CCWGG	2 cut(s)	238, 404
Bst4CI	ACNGT	2 cut(s)	660, 674
Bst6I	CTCTTC	1 cut(s)	64
BstACI	GRCGYC	3 cut(s)	303, 525, 533
BstC8I	GCNNGC	5 cut(s)	170, 201, 233, 294, 651
BstDSI	CCRYGG	3 cut(s)	33, 429, 659
BstEII	GGTNACC	1 cut(s)	95
BstF5I	GGATG	2 cut(s)	336, 399
BstFNI	CGCG	3 cut(s)	231, 292, 396
BstHHI	GCGC	2 cut(s)	292, 655
BstKTI	GATC	2 cut(s)	116, 255
BstMBI	GATC	2 cut(s)	113, 252
BstMCI	CGRYCG	1 cut(s)	594
BstMWI	GCNNNNNNNGC	7 cut(s)	293, 413, 419, 422, 541, 568, 646
BstNI	CCWGG	2 cut(s)	238, 404
BstPI	GGTNACC	1 cut(s)	95
BstSCI	CCNGG	6 cut(s)	106, 174, 236, 359, 402, 527
BstSLI	GKGCMC	1 cut(s)	298
BstUI	CGCG	3 cut(s)	231, 292, 396
BstV1I	GCAGC	3 cut(s)	174, 177, 549
BstV2I	GAAGAC	1 cut(s)	693
BstX2I	RGATCY	2 cut(s)	113, 252
BstYI	RGATCY	2 cut(s)	113, 252
BstZI	CGGCCG	1 cut(s)	591
BsuI	GTATCC	1 cut(s)	229
BsuRI	GGCC	3 cut(s)	407, 593, 728
BtgI	CCRYGG	3 cut(s)	33, 429, 659
BtsCI	GGATG	2 cut(s)	336, 399
Cac8I	GCNNGC	5 cut(s)	170, 201, 233, 294, 651
CfoI	GCGC	2 cut(s)	292, 655
Cfr10I	RCCGGY	1 cut(s)	649
Cfr13I	GGNCC	3 cut(s)	190, 363, 745
CseI	GACGC	2 cut(s)	533, 541
Csp6I	GTAC	1 cut(s)	643
CspCI	CAANNNNNGTGG	2 cut(s)	644, 679
CviAII	CATG	1 cut(s)	430
CviQI	GTAC	1 cut(s)	643
DpnI	GATC	2 cut(s)	115, 254
DpnII	GATC	2 cut(s)	113, 252
EaeI	YGGCCR	2 cut(s)	591, 726
EagI	CGGCCG	1 cut(s)	591
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
EciI	GGCGGA	2 cut(s)	322, 438
EclXI	CGGCCG	1 cut(s)	591
Eco130I	CCWWGG	1 cut(s)	429
Eco24I	GRGCYC	1 cut(s)	237
Eco47I	GGWCC	3 cut(s)	190, 363, 745
Eco52I	CGGCCG	1 cut(s)	591
Eco88I	CYCGRG	2 cut(s)	82, 121
Eco91I	GGTNACC	1 cut(s)	95
EcoO109I	RGGNCCY	2 cut(s)	363, 745
EcoO65I	GGTNACC	1 cut(s)	95
EcoRII	CCWGG	2 cut(s)	236, 402
EcoT14I	CCWWGG	1 cut(s)	429
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	1 cut(s)	433
FaiI	YATR	3 cut(s)	431, 693, 699
FaqI	GGGAC	2 cut(s)	544, 589
FatI	CATG	1 cut(s)	429
FauI	CCCGC	3 cut(s)	192, 401, 654
FblI	GTMKAC	1 cut(s)	41
Fnu4HI	GCNGC	9 cut(s)	163, 166, 288, 309, 408, 411, 414, 423, 563
FokI	GGATG	2 cut(s)	323, 386
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	9 cut(s)	163, 166, 288, 309, 408, 411, 414, 423, 563
FspBI	CTAG	1 cut(s)	440
GlaI	GCGC	2 cut(s)	291, 654
GluI	GCNGC	9 cut(s)	163, 166, 288, 309, 408, 411, 414, 423, 563
GsaI	CCCAGC	2 cut(s)	548, 575
GsuI	CTGGAG	1 cut(s)	533
HaeIII	GGCC	3 cut(s)	407, 593, 728
HapII	CCGG	6 cut(s)	108, 176, 360, 528, 536, 650
HgaI	GACGC	2 cut(s)	533, 541
HhaI	GCGC	2 cut(s)	292, 655
Hin1I	GRCGYC	3 cut(s)	303, 525, 533
Hin1II	CATG	1 cut(s)	433
Hin6I	GCGC	2 cut(s)	290, 653
HinP1I	GCGC	2 cut(s)	290, 653
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HinfI	GANTC	7 cut(s)	38, 130, 247, 380, 587, 596, 623
HpaII	CCGG	6 cut(s)	108, 176, 360, 528, 536, 650
HphI	GGTGA	3 cut(s)	107, 529, 686
Hpy166II	GTNNAC	3 cut(s)	42, 181, 296
Hpy188I	TCNGA	6 cut(s)	25, 90, 118, 194, 223, 252
Hpy188III	TCNNGA	1 cut(s)	139
Hpy8I	GTNNAC	3 cut(s)	42, 181, 296
Hpy99I	CGWCG	8 cut(s)	305, 308, 496, 499, 502, 505, 508, 511
HpyAV	CCTTC	2 cut(s)	277, 480
HpyCH4III	ACNGT	2 cut(s)	660, 674
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	1 cut(s)	296
HpyF10VI	GCNNNNNNNGC	7 cut(s)	293, 413, 419, 422, 541, 568, 646
HpySE526I	ACGT	1 cut(s)	303
Hsp92I	GRCGYC	3 cut(s)	303, 525, 533
Hsp92II	CATG	1 cut(s)	433
HspAI	GCGC	2 cut(s)	290, 653
KroI	GCCGGC	1 cut(s)	649
KroNI	GCCGGC	1 cut(s)	651
Kzo9I	GATC	2 cut(s)	113, 252
LmnI	GCTCC	5 cut(s)	26, 141, 541, 559, 603
Lsp1109I	GCAGC	3 cut(s)	174, 177, 549
MaeI	CTAG	1 cut(s)	440
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	3 cut(s)	95, 102, 517
MalI	GATC	2 cut(s)	115, 254
MboI	GATC	2 cut(s)	113, 252
MboII	GAAGA	4 cut(s)	51, 253, 256, 698
MflI	RGATCY	2 cut(s)	113, 252
MhlI	GDGCHC	2 cut(s)	237, 298
MluCI	AATT	3 cut(s)	385, 677, 706
MlyI	GAGTC	5 cut(s)	47, 374, 596, 605, 617
MmeI	TCCRAC	3 cut(s)	48, 68, 141
MreI	CGCCGGCG	1 cut(s)	649
MroNI	GCCGGC	1 cut(s)	649
MseI	TTAA	3 cut(s)	711, 722, 763
MspI	CCGG	6 cut(s)	108, 176, 360, 528, 536, 650
MspR9I	CCNGG	6 cut(s)	108, 176, 238, 361, 404, 529
Mva1269I	GAATGC	1 cut(s)	201
MvaI	CCWGG	2 cut(s)	238, 404
MvnI	CGCG	3 cut(s)	231, 292, 396
MwoI	GCNNNNNNNGC	7 cut(s)	293, 413, 419, 422, 541, 568, 646
NaeI	GCCGGC	1 cut(s)	651
NciI	CCSGG	4 cut(s)	108, 176, 361, 529
NcoI	CCATGG	1 cut(s)	429
NdeII	GATC	2 cut(s)	113, 252
NgoMIV	GCCGGC	1 cut(s)	649
NlaIII	CATG	1 cut(s)	433
NlaIV	GGNNCC	4 cut(s)	115, 191, 265, 364
NmeAIII	GCCGAG	5 cut(s)	240, 455, 591, 619, 754
NmuCI	GTSAC	2 cut(s)	95, 517
PcsI	WCGNNNNNNNCGW	5 cut(s)	491, 497, 500, 503, 591
PctI	GAATGC	1 cut(s)	201
PdiI	GCCGGC	1 cut(s)	651
PfeI	GAWTC	2 cut(s)	130, 247
PkrI	GCNGC	9 cut(s)	164, 167, 289, 310, 409, 412, 415, 424, 564
PleI	GAGTC	5 cut(s)	46, 374, 595, 604, 617
PpsI	GAGTC	5 cut(s)	46, 374, 595, 604, 617
PpuMI	RGGWCCY	2 cut(s)	363, 745
Psp5II	RGGWCCY	2 cut(s)	363, 745
Psp6I	CCWGG	2 cut(s)	236, 402
PspEI	GGTNACC	1 cut(s)	95
PspFI	CCCAGC	2 cut(s)	544, 571
PspGI	CCWGG	2 cut(s)	236, 402
PspN4I	GGNNCC	4 cut(s)	115, 191, 265, 364
PspPI	GGNCC	3 cut(s)	190, 363, 745
PspPPI	RGGWCCY	2 cut(s)	363, 745
PsuI	RGATCY	2 cut(s)	113, 252
RsaI	GTAC	1 cut(s)	644
RsaNI	GTAC	1 cut(s)	643
SalI	GTCGAC	1 cut(s)	40
SaqAI	TTAA	3 cut(s)	711, 722, 763
SatI	GCNGC	9 cut(s)	163, 166, 288, 309, 408, 411, 414, 423, 563
Sau3AI	GATC	2 cut(s)	113, 252
Sau96I	GGNCC	3 cut(s)	190, 363, 745
SchI	GAGTC	5 cut(s)	47, 374, 596, 605, 617
ScrFI	CCNGG	6 cut(s)	108, 176, 238, 361, 404, 529
SduI	GDGCHC	2 cut(s)	237, 298
SetI	ASST	9 cut(s)	50, 269, 306, 441, 519, 546, 564, 584, 750
SgrAI	CRCCGGYG	1 cut(s)	649
SinI	GGWCC	3 cut(s)	190, 363, 745
Sse9I	AATT	3 cut(s)	385, 677, 706
SspMI	CTAG	1 cut(s)	440
StyD4I	CCNGG	6 cut(s)	106, 174, 236, 359, 402, 527
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	2 cut(s)	660, 674
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	2 cut(s)	41, 618
TasI	AATT	3 cut(s)	385, 677, 706
TauI	GCSGC	6 cut(s)	290, 311, 410, 413, 416, 425
TfiI	GAWTC	2 cut(s)	130, 247
Tru1I	TTAA	3 cut(s)	711, 722, 763
Tru9I	TTAA	3 cut(s)	711, 722, 763
TseFI	GTSAC	2 cut(s)	95, 517
TseI	GCWGC	3 cut(s)	162, 165, 562
Tsp45I	GTSAC	2 cut(s)	95, 517
TspDTI	ATGAA	1 cut(s)	51
TspGWI	ACGGA	2 cut(s)	50, 536
VneI	GTGCAC	1 cut(s)	294
VpaK11BI	GGWCC	3 cut(s)	190, 363, 745
XapI	RAATTY	2 cut(s)	677, 706
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	41
XspI	CTAG	1 cut(s)	440
ZraI	GACGTC	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.