Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0004337

Physical Location & Seq

Genomic Coordinates Reverse (-)

10245812 .. 10246570

Gene Structure 759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1114100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAGCGCTGATCAACCCCAAAGTTCAGAAACTGAGAGCAACTCCAACTCATCCACTTCCGCATCGCCTCCTTCCTCGCCTTCCTCACTCCAAAACCAAAACCCACAAAAACCCAGCTCGCCAATTCACCAAGAAACCGACTTACCCACCAAAAACAATGCCAAACGGGTCAGAGACTCCAGCAAGCACCCGGTTTATCGGGGGGTCCGAATGAGGAACTGGGGCAAATGGGTATCCGAAATCCGCGAGCCCCGCAAGAAATCGCGCATTTGGCTCGGCACCTTCCCGACTCCTGAAATGGCCGCCCGGGCCCACGACGTCGCCGCCTTGAGCATCAAGGGCAACTCGGCGATTCTCAACTTCCCGGAGCTCTCCAACTCTTTGCCTCGCCCAGTTTCTCTCGCCCCCCGCGACGTCCAGGCCGCCGCCACCAAAGCAGCCCAAATGCATCAGTTCGACTCCATCCGGTCAATGTCGCCCTCCATACTCTCCTCTTCCTCCTCCTCGTCGCTGTCCTCGCTCGTCTCGGCTATAGACAACCTGTCGACCGAGTCGGATGAGCTGAGCGAGATCGTCGAGTTGCCGAGTCTGAGTTACGAGTCGACCGAGTTGAGAAGCGAGTTCGTGTTTGTGGAGTCGGAGGACCAATGGGTTTATCCGCCGCCGTGGCTGCAGCGCGTTGAGGAGTTCGAATGCGGTGAGTTAGGGGCGGCGAGTTCAGTTGGGTTTGAGGGTTTGTTATGGGACTATAATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

253

Amino Acids

27.76

Weight (kDa)

5.12

Isoelectric Point (pI)

74.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	64 - 114	1.9e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11590 AT5G25810
fragaria_vesca	FvH4_1g05820 FvH4_2g35620
malus_domestica	MD02G1060200.v1.1 MD08G1114100.v1.1 MD15G1093800.v1.1 MD15G1193700.v1.1
prunus_persica	Prupe.1G448600_v2.0.a1 Prupe.7G222700_v2.0.a1
pyrus_communis	pycom02g04920 pycom08g09510 pycom15g17340
rosa_chinensis	RchiOBHm_Chr2g0091471 RchiOBHm_Chr6g0306191
rosa_laevigata	RLG00000010815 RLG00000016227
rosa_multiflora	Rmu_sc0002407.1_g000015 Rmu_sc0003594.1_g000007
rosa_roxburghii	Rroxscaffold_2G00150040 Rroxscaffold_7G00161970
rosa_rugosa	Rorug02G0018200 Rorug06G0347800
rosa_samantha	Rh2BG062600 Rh2CG064300 Rh2DG062700 Rh6AG460400 Rh6BG441000 Rh6CG474400 Rh6DG460700
rosa_wichuraiana	Rw2G005700 Rw6G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	321, 417
AccB1I	GGYRCC	1 cut(s)	278
AccI	GTMKAC	2 cut(s)	545, 602
AccII	CGCG	4 cut(s)	246, 265, 411, 678
AcoI	YGGCCR	1 cut(s)	300
AcyI	GRCGYC	2 cut(s)	318, 414
AfeI	AGCGCT	1 cut(s)	7
AhdI	GACNNNNNGTC	1 cut(s)	541
AjnI	CCWGG	1 cut(s)	417
AluBI	AGCT	3 cut(s)	117, 370, 562
AluI	AGCT	3 cut(s)	117, 370, 562
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	2 cut(s)	168, 529
AlwNI	CAGNNNCTG	1 cut(s)	32
Ama87I	CYCGRG	1 cut(s)	306
Aor51HI	AGCGCT	1 cut(s)	7
AoxI	GGCC	3 cut(s)	300, 309, 420
ApaI	GGGCCC	1 cut(s)	313
ApeKI	GCWGC	3 cut(s)	437, 670, 673
AspLEI	GCGC	3 cut(s)	8, 267, 678
AspS9I	GGNCC	4 cut(s)	205, 309, 310, 643
AsuC2I	CCSGG	4 cut(s)	191, 307, 308, 365
AsuHPI	GGTGA	2 cut(s)	119, 710
AsuII	TTCGAA	1 cut(s)	690
AvaI	CYCGRG	1 cut(s)	306
AvaII	GGWCC	2 cut(s)	205, 643
BaeGI	GKGCMC	1 cut(s)	313
BanI	GGYRCC	1 cut(s)	278
BanII	GRGCYC	3 cut(s)	252, 313, 372
Bbv12I	GWGCWC	1 cut(s)	372
BbvI	GCAGC	3 cut(s)	449, 657, 685
BccI	CCATC	1 cut(s)	470
BceAI	ACGGC	1 cut(s)	649
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BciT130I	CCWGG	1 cut(s)	419
BciVI	GTATCC	1 cut(s)	244
BclI	TGATCA	1 cut(s)	10
BcnI	CCSGG	4 cut(s)	191, 307, 308, 365
BcoDI	GTCTC	2 cut(s)	168, 529
BfmI	CTRYAG	2 cut(s)	531, 671
BfoI	RGCGCY	1 cut(s)	9
BfuI	GTATCC	1 cut(s)	244
BglI	GCCNNNNNGGC	2 cut(s)	308, 667
BisI	GCNGC	9 cut(s)	303, 324, 423, 426, 438, 662, 671, 674, 711
BlpI	GCTNAGC	1 cut(s)	563
BlsI	GCNGC	9 cut(s)	304, 325, 424, 427, 439, 663, 672, 675, 712
Bme1390I	CCNGG	5 cut(s)	191, 307, 308, 365, 419
Bme18I	GGWCC	2 cut(s)	205, 643
BmeRI	GACNNNNNGTC	1 cut(s)	541
BmeT110I	CYCGRG	1 cut(s)	306
BmgT120I	GGNCC	4 cut(s)	205, 309, 310, 643
BmiI	GGNNCC	3 cut(s)	206, 280, 311
BmrFI	CCNGG	5 cut(s)	191, 307, 308, 365, 419
BmrI	ACTGGG	2 cut(s)	229, 386
BmsI	GCATC	3 cut(s)	71, 342, 457
BmuI	ACTGGG	2 cut(s)	229, 386
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
BpmI	CTGGAG	1 cut(s)	163
Bpu1102I	GCTNAGC	1 cut(s)	563
Bpu14I	TTCGAA	1 cut(s)	690
BpuEI	CTTGAG	1 cut(s)	349
BpuMI	CCSGG	4 cut(s)	191, 307, 308, 365
BsaHI	GRCGYC	2 cut(s)	318, 414
BsaJI	CCNNGG	2 cut(s)	306, 665
BsaWI	WCCGGW	1 cut(s)	465
Bse1I	ACTGG	2 cut(s)	224, 392
BseBI	CCWGG	1 cut(s)	419
BseDI	CCNNGG	2 cut(s)	306, 665
BseGI	GGATG	3 cut(s)	50, 462, 562
BseMII	CTCAG	3 cut(s)	24, 554, 581
BseNI	ACTGG	2 cut(s)	224, 392
BseRI	GAGGAG	4 cut(s)	481, 490, 493, 698
BseSI	GKGCMC	1 cut(s)	313
BseXI	GCAGC	3 cut(s)	449, 657, 685
BseYI	CCCAGC	1 cut(s)	113
Bsh1236I	CGCG	4 cut(s)	246, 265, 411, 678
Bsh1285I	CGRYCG	2 cut(s)	549, 606
BshFI	GGCC	3 cut(s)	302, 311, 422
BshNI	GGYRCC	1 cut(s)	278
BsiEI	CGRYCG	2 cut(s)	549, 606
BsiHKAI	GWGCWC	1 cut(s)	372
BsiHKCI	CYCGRG	1 cut(s)	306
BsiSI	CCGG	4 cut(s)	191, 307, 365, 466
BsmAI	GTCTC	2 cut(s)	168, 529
BsmBI	CGTCTC	1 cut(s)	529
BsmI	GAATGC	1 cut(s)	698
BsnI	GGCC	3 cut(s)	302, 311, 422
BsoBI	CYCGRG	1 cut(s)	306
Bsp119I	TTCGAA	1 cut(s)	690
Bsp120I	GGGCCC	1 cut(s)	309
Bsp1286I	GDGCHC	3 cut(s)	252, 313, 372
Bsp143I	GATC	2 cut(s)	10, 570
Bsp1720I	GCTNAGC	1 cut(s)	563
BspANI	GGCC	3 cut(s)	302, 311, 422
BspCNI	CTCAG	3 cut(s)	25, 555, 582
BspFNI	CGCG	4 cut(s)	246, 265, 411, 678
BspLI	GGNNCC	3 cut(s)	206, 280, 311
BspMAI	CTGCAG	1 cut(s)	675
BspT104I	TTCGAA	1 cut(s)	690
BspT107I	GGYRCC	1 cut(s)	278
BsrI	ACTGG	2 cut(s)	224, 392
BssECI	CCNNGG	2 cut(s)	306, 665
BssMI	GATC	2 cut(s)	10, 570
BssNI	GRCGYC	2 cut(s)	318, 414
Bst2UI	CCWGG	1 cut(s)	419
Bst6I	CTCTTC	1 cut(s)	499
BstACI	GRCGYC	2 cut(s)	318, 414
BstBI	TTCGAA	1 cut(s)	690
BstC8I	GCNNGC	3 cut(s)	119, 185, 248
BstDEI	CTNAG	3 cut(s)	33, 563, 590
BstDSI	CCRYGG	1 cut(s)	665
BstF5I	GGATG	3 cut(s)	50, 462, 562
BstFNI	CGCG	4 cut(s)	246, 265, 411, 678
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	3 cut(s)	8, 267, 678
BstKTI	GATC	2 cut(s)	13, 573
BstMAI	GTCTC	2 cut(s)	168, 529
BstMBI	GATC	2 cut(s)	10, 570
BstMCI	CGRYCG	2 cut(s)	549, 606
BstMWI	GCNNNNNNNGC	8 cut(s)	252, 271, 308, 339, 434, 517, 667, 670
BstNI	CCWGG	1 cut(s)	419
BstSCI	CCNGG	5 cut(s)	189, 305, 306, 363, 417
BstSFI	CTRYAG	2 cut(s)	531, 671
BstSLI	GKGCMC	1 cut(s)	313
BstUI	CGCG	4 cut(s)	246, 265, 411, 678
BstV1I	GCAGC	3 cut(s)	449, 657, 685
BsuI	GTATCC	1 cut(s)	244
BsuRI	GGCC	3 cut(s)	302, 311, 422
BtgI	CCRYGG	1 cut(s)	665
BtgZI	GCGATG	1 cut(s)	48
BtsCI	GGATG	3 cut(s)	50, 462, 562
Cac8I	GCNNGC	3 cut(s)	119, 185, 248
CaiI	CAGNNNCTG	1 cut(s)	32
CfoI	GCGC	3 cut(s)	8, 267, 678
Cfr13I	GGNCC	4 cut(s)	205, 309, 310, 643
Cfr9I	CCCGGG	1 cut(s)	306
DdeI	CTNAG	3 cut(s)	33, 563, 590
DpnI	GATC	2 cut(s)	12, 572
DpnII	GATC	2 cut(s)	10, 570
DriI	GACNNNNNGTC	1 cut(s)	541
EaeI	YGGCCR	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	499
Eam1105I	GACNNNNNGTC	1 cut(s)	541
EarI	CTCTTC	1 cut(s)	499
EciI	GGCGGA	1 cut(s)	648
Ecl136II	GAGCTC	1 cut(s)	370
Eco24I	GRGCYC	3 cut(s)	252, 313, 372
Eco47I	GGWCC	2 cut(s)	205, 643
Eco47III	AGCGCT	1 cut(s)	7
Eco53kI	GAGCTC	1 cut(s)	370
Eco88I	CYCGRG	1 cut(s)	306
EcoICRI	GAGCTC	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	417
EcoT22I	ATGCAT	1 cut(s)	450
EcoT38I	GRGCYC	3 cut(s)	252, 313, 372
Esp3I	CGTCTC	1 cut(s)	529
FaiI	YATR	4 cut(s)	485, 533, 742, 750
FauI	CCCGC	2 cut(s)	260, 416
FbaI	TGATCA	1 cut(s)	10
FblI	GTMKAC	2 cut(s)	545, 602
Fnu4HI	GCNGC	9 cut(s)	303, 324, 423, 426, 438, 662, 671, 674, 711
FokI	GGATG	3 cut(s)	37, 449, 569
FriOI	GRGCYC	3 cut(s)	252, 313, 372
Fsp4HI	GCNGC	9 cut(s)	303, 324, 423, 426, 438, 662, 671, 674, 711
GlaI	GCGC	3 cut(s)	7, 266, 677
GluI	GCNGC	9 cut(s)	303, 324, 423, 426, 438, 662, 671, 674, 711
GsaI	CCCAGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	163
HaeII	RGCGCY	1 cut(s)	9
HaeIII	GGCC	3 cut(s)	302, 311, 422
HapII	CCGG	4 cut(s)	191, 307, 365, 466
HhaI	GCGC	3 cut(s)	8, 267, 678
Hin1I	GRCGYC	2 cut(s)	318, 414
Hin6I	GCGC	3 cut(s)	6, 265, 676
HinP1I	GCGC	3 cut(s)	6, 265, 676
HincII	GTYRAC	2 cut(s)	546, 603
HindII	GTYRAC	2 cut(s)	546, 603
HinfI	GANTC	8 cut(s)	176, 289, 352, 458, 551, 586, 599, 635
HpaII	CCGG	4 cut(s)	191, 307, 365, 466
HphI	GGTGA	2 cut(s)	119, 710
Hpy166II	GTNNAC	2 cut(s)	546, 603
Hpy188I	TCNGA	7 cut(s)	28, 173, 209, 238, 556, 591, 640
Hpy188III	TCNNGA	2 cut(s)	286, 293
Hpy8I	GTNNAC	2 cut(s)	546, 603
Hpy99I	CGWCG	5 cut(s)	320, 323, 416, 511, 578
HpyAV	CCTTC	3 cut(s)	81, 90, 292
HpyCH4IV	ACGT	2 cut(s)	318, 414
HpyCH4V	TGCA	2 cut(s)	448, 673
HpyF10VI	GCNNNNNNNGC	8 cut(s)	252, 271, 308, 339, 434, 517, 667, 670
HpyF3I	CTNAG	3 cut(s)	33, 563, 590
HpySE526I	ACGT	2 cut(s)	318, 414
Hsp92I	GRCGYC	2 cut(s)	318, 414
HspAI	GCGC	3 cut(s)	6, 265, 676
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	2 cut(s)	10, 570
LmnI	GCTCC	1 cut(s)	367
Lsp1109I	GCAGC	3 cut(s)	449, 657, 685
LweI	GCATC	3 cut(s)	71, 342, 457
MaeII	ACGT	2 cut(s)	318, 414
MaeIII	GTNAC	1 cut(s)	593
MalI	GATC	2 cut(s)	12, 572
MboI	GATC	2 cut(s)	10, 570
MboII	GAAGA	1 cut(s)	486
MhlI	GDGCHC	3 cut(s)	252, 313, 372
MluCI	AATT	2 cut(s)	123, 754
MlyI	GAGTC	7 cut(s)	170, 283, 452, 560, 595, 608, 644
MmeI	TCCRAC	4 cut(s)	69, 399, 534, 618
Mph1103I	ATGCAT	1 cut(s)	450
MspI	CCGG	4 cut(s)	191, 307, 365, 466
MspR9I	CCNGG	5 cut(s)	191, 307, 308, 365, 419
Mva1269I	GAATGC	1 cut(s)	698
MvaI	CCWGG	1 cut(s)	419
MvnI	CGCG	4 cut(s)	246, 265, 411, 678
MwoI	GCNNNNNNNGC	8 cut(s)	252, 271, 308, 339, 434, 517, 667, 670
NciI	CCSGG	4 cut(s)	191, 307, 308, 365
NdeII	GATC	2 cut(s)	10, 570
NlaIV	GGNNCC	3 cut(s)	206, 280, 311
NmeAIII	GCCGAG	4 cut(s)	255, 326, 506, 609
NsiI	ATGCAT	1 cut(s)	450
NspV	TTCGAA	1 cut(s)	690
PcsI	WCGNNNNNNNCGW	3 cut(s)	205, 408, 603
PctI	GAATGC	1 cut(s)	698
PfeI	GAWTC	1 cut(s)	352
PflFI	GACNNNGTC	1 cut(s)	550
PfoI	TCCNGGA	1 cut(s)	363
PkrI	GCNGC	9 cut(s)	304, 325, 424, 427, 439, 663, 672, 675, 712
PleI	GAGTC	7 cut(s)	170, 283, 452, 559, 594, 607, 643
PpsI	GAGTC	7 cut(s)	170, 283, 452, 559, 594, 607, 643
Psp124BI	GAGCTC	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	417
PspFI	CCCAGC	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	417
PspN4I	GGNNCC	3 cut(s)	206, 280, 311
PspOMI	GGGCCC	1 cut(s)	309
PspPI	GGNCC	4 cut(s)	205, 309, 310, 643
PstI	CTGCAG	1 cut(s)	675
PstNI	CAGNNNCTG	1 cut(s)	32
PsyI	GACNNNGTC	1 cut(s)	550
SacI	GAGCTC	1 cut(s)	372
SalI	GTCGAC	2 cut(s)	544, 601
SatI	GCNGC	9 cut(s)	303, 324, 423, 426, 438, 662, 671, 674, 711
Sau3AI	GATC	2 cut(s)	10, 570
Sau96I	GGNCC	4 cut(s)	205, 309, 310, 643
SchI	GAGTC	7 cut(s)	170, 283, 452, 560, 595, 608, 644
ScrFI	CCNGG	5 cut(s)	191, 307, 308, 365, 419
SduI	GDGCHC	3 cut(s)	252, 313, 372
SetI	ASST	7 cut(s)	119, 284, 321, 372, 417, 543, 564
SfaNI	GCATC	3 cut(s)	71, 342, 457
SfcI	CTRYAG	2 cut(s)	531, 671
SfiI	GGCCNNNNNGGCC	1 cut(s)	308
SfuI	TTCGAA	1 cut(s)	690
SinI	GGWCC	2 cut(s)	205, 643
SmaI	CCCGGG	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	328
SmoI	CTYRAG	1 cut(s)	328
SrfI	GCCCGGGC	1 cut(s)	308
Sse9I	AATT	2 cut(s)	123, 754
SstI	GAGCTC	1 cut(s)	372
StyD4I	CCNGG	5 cut(s)	189, 305, 306, 363, 417
TaiI	ACGT	2 cut(s)	321, 417
TaqI	TCGA	5 cut(s)	456, 545, 576, 602, 690
TaqII	GACCGA	2 cut(s)	563, 620
TasI	AATT	2 cut(s)	123, 754
TauI	GCSGC	6 cut(s)	305, 326, 425, 428, 664, 713
TfiI	GAWTC	1 cut(s)	352
TseI	GCWGC	3 cut(s)	437, 670, 673
TspMI	CCCGGG	1 cut(s)	306
Tth111I	GACNNNGTC	1 cut(s)	550
VpaK11BI	GGWCC	2 cut(s)	205, 643
XmaI	CCCGGG	1 cut(s)	306
XmiI	GTMKAC	2 cut(s)	545, 602
ZraI	GACGTC	2 cut(s)	319, 415
Zsp2I	ATGCAT	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.