Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002407.1

Orthogroup ID

OG0019380

Physical Location & Seq

Genomic Coordinates Reverse (-)

66070 .. 67174

Gene Structure 1105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002407.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atgtttcgttgctgtaacgcattgctggatgagtatacattttcgacaatggcaaaagtttccagcgaggttggggacttggtgctcgggaaatggggtttcatgggaagagtgtgtttgatgaaatgccggagagaaatgtggggtcttggaattgatagcgggtatggattggatttgaatttgggtttggatgttcatcctgagtgttgtttggttgatatgtattgtaggagtggtagtgttgatttggggagacgggtgtttgagcgcatgaagcgtagaaatgtatatgcttggaagatgatggtctatagttatgtgcagaatggagcgtctgatgaagaattgattcttttctggaagatgcaggtggaagatggaatagaacccaatagagtatcacttgaaggtgcaaggcgagtctttgaggatgactcttttcgtaaggatgcaatcccttggagttcaatgatatcacggtatggattatatggaaggggtgaggaagccattgttttgtataataagatgcttcagcttggaatcaaaccggatatgaccatagtaggcgttctttcagcttgcggcaggtcaggattggtaaatgaaaacttttcagtctacagctctgcaacaactgattatggaattaaaccaaccaacagtggaggtatgggtgtgaattgtcgactttaccccttcatgtgggcccactcgttgggtttgttagagccagctcatcacttaacacctgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

253

Amino Acids

28.58

Weight (kDa)

6.12

Isoelectric Point (pI)

38.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019380)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0091491
rosa_laevigata	RLG00000016228
rosa_multiflora	Rmu_sc0002407.1_g000011
rosa_roxburghii	Rroxscaffold_2G00150030
rosa_rugosa	Rorug02G0018200
rosa_samantha	Rh2AG063200 Rh2BG062800 Rh2CG064500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	361
Acc36I	ACCTGC	2 cut(s)	361, 582
AccB7I	CCANNNNNTGG	1 cut(s)	721
AccI	GTMKAC	3 cut(s)	35, 624, 691
AciI	CCGC	2 cut(s)	162, 588
AcsI	RAATTY	1 cut(s)	181
AcuI	CTGAAG	1 cut(s)	521
AfiI	CCNNNNNNNGG	2 cut(s)	708, 721
AgsI	TTSAA	3 cut(s)	181, 410, 471
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AluBI	AGCT	4 cut(s)	541, 584, 630, 740
AluI	AGCT	4 cut(s)	541, 584, 630, 740
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	250
Ama87I	CYCGRG	1 cut(s)	86
AoxI	GGCC	1 cut(s)	711
ApaI	GGGCCC	1 cut(s)	715
ApoI	RAATTY	1 cut(s)	181
Asp700I	GAANNNNTTC	1 cut(s)	351
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	2 cut(s)	711, 712
AsuHPI	GGTGA	1 cut(s)	515
AvaI	CYCGRG	1 cut(s)	86
BaeGI	GKGCMC	1 cut(s)	715
BanII	GRGCYC	1 cut(s)	715
Bbv12I	GWGCWC	1 cut(s)	87
BccI	CCATC	2 cut(s)	301, 374
BcoDI	GTCTC	1 cut(s)	250
BfmI	CTRYAG	2 cut(s)	313, 625
BfuAI	ACCTGC	2 cut(s)	361, 582
BisI	GCNGC	1 cut(s)	589
BlsI	GCNGC	1 cut(s)	590
BmeT110I	CYCGRG	1 cut(s)	86
BmgT120I	GGNCC	2 cut(s)	711, 712
BmiI	GGNNCC	1 cut(s)	713
BmsI	GCATC	3 cut(s)	357, 442, 522
BplI	GAGNNNNNCTC	2 cut(s)	422, 454
BsaBI	GATNNNNATC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	461
BsaWI	WCCGGW	1 cut(s)	553
BsaXI	ACNNNNNCTCC	2 cut(s)	226, 256
Bsc4I	CCNNNNNNNGG	2 cut(s)	708, 721
Bse3DI	GCAATG	1 cut(s)	20
Bse8I	GATNNNNATC	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	461
BseGI	GGATG	5 cut(s)	34, 199, 199, 439, 457
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	2 cut(s)	708, 721
BseMI	GCAATG	1 cut(s)	20
BseMII	CTCAG	1 cut(s)	195
BseSI	GKGCMC	1 cut(s)	715
BsgI	GTGCAG	1 cut(s)	344
BshFI	GGCC	1 cut(s)	713
BsiHKAI	GWGCWC	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	2 cut(s)	130, 554
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	2 cut(s)	708, 721
BsmAI	GTCTC	1 cut(s)	250
BsmBI	CGTCTC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	1 cut(s)	713
BsoBI	CYCGRG	1 cut(s)	86
Bsp120I	GGGCCC	1 cut(s)	711
Bsp1286I	GDGCHC	2 cut(s)	87, 715
BspACI	CCGC	2 cut(s)	162, 588
BspANI	GGCC	1 cut(s)	713
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	713
BspMI	ACCTGC	2 cut(s)	361, 582
BsrDI	GCAATG	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	461
BssNAI	GTATAC	1 cut(s)	36
BssT1I	CCWWGG	1 cut(s)	461
Bst1107I	GTATAC	1 cut(s)	36
Bst4CI	ACNGT	2 cut(s)	483, 668
Bst6I	CTCTTC	1 cut(s)	103
BstC8I	GCNNGC	2 cut(s)	586, 738
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	5 cut(s)	34, 199, 199, 439, 457
BstHHI	GCGC	1 cut(s)	273
BstMAI	GTCTC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	1 cut(s)	277
BstSFI	CTRYAG	2 cut(s)	313, 625
BstSLI	GKGCMC	1 cut(s)	715
BstZ17I	GTATAC	1 cut(s)	36
BsuRI	GGCC	1 cut(s)	713
BtsCI	GGATG	5 cut(s)	34, 199, 199, 439, 457
BtsIMutI	CAGTG	1 cut(s)	673
BveI	ACCTGC	2 cut(s)	361, 582
Cac8I	GCNNGC	2 cut(s)	586, 738
CfoI	GCGC	1 cut(s)	273
Cfr13I	GGNCC	2 cut(s)	711, 712
CseI	GACGC	1 cut(s)	324
CviAII	CATG	3 cut(s)	103, 274, 706
CviJI	RGCY	7 cut(s)	512, 541, 584, 630, 713, 736, 740
CviKI_1	RGCY	7 cut(s)	512, 541, 584, 630, 713, 736, 740
DdeI	CTNAG	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	461
Eco24I	GRGCYC	1 cut(s)	715
Eco32I	GATATC	1 cut(s)	477
Eco57I	CTGAAG	1 cut(s)	521
Eco88I	CYCGRG	1 cut(s)	86
EcoRV	GATATC	1 cut(s)	477
EcoT14I	CCWWGG	1 cut(s)	461
EcoT38I	GRGCYC	1 cut(s)	715
ErhI	CCWWGG	1 cut(s)	461
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	3 cut(s)	106, 277, 709
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	3 cut(s)	102, 273, 705
FauI	CCCGC	1 cut(s)	155
FblI	GTMKAC	3 cut(s)	35, 624, 691
Fnu4HI	GCNGC	1 cut(s)	589
FokI	GGATG	5 cut(s)	41, 186, 206, 446, 464
FriOI	GRGCYC	1 cut(s)	715
Fsp4HI	GCNGC	1 cut(s)	589
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	1 cut(s)	589
HaeIII	GGCC	1 cut(s)	713
HapII	CCGG	2 cut(s)	130, 554
HgaI	GACGC	1 cut(s)	324
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	3 cut(s)	106, 277, 709
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HincII	GTYRAC	1 cut(s)	692
HindII	GTYRAC	1 cut(s)	692
HinfI	GANTC	4 cut(s)	352, 423, 437, 546
HpaII	CCGG	2 cut(s)	130, 554
HphI	GGTGA	1 cut(s)	515
Hpy166II	GTNNAC	3 cut(s)	36, 625, 692
Hpy188I	TCNGA	1 cut(s)	340
Hpy188III	TCNNGA	4 cut(s)	88, 203, 361, 597
Hpy8I	GTNNAC	3 cut(s)	36, 625, 692
HpyAV	CCTTC	3 cut(s)	404, 492, 712
HpyCH4III	ACNGT	2 cut(s)	483, 668
HpyCH4V	TGCA	5 cut(s)	325, 370, 416, 455, 635
HpyF10VI	GCNNNNNNNGC	1 cut(s)	277
HpyF3I	CTNAG	1 cut(s)	204
Hsp92II	CATG	3 cut(s)	106, 277, 709
HspAI	GCGC	1 cut(s)	271
LmnI	GCTCC	1 cut(s)	332
LweI	GCATC	3 cut(s)	357, 442, 522
MaeIII	GTNAC	1 cut(s)	14
MboII	GAAGA	5 cut(s)	120, 313, 356, 376, 389
MhlI	GDGCHC	2 cut(s)	87, 715
MluCI	AATT	5 cut(s)	153, 181, 347, 651, 685
MlyI	GAGTC	2 cut(s)	431, 432
MnlI	CCTC	4 cut(s)	61, 424, 499, 665
MroXI	GAANNNNTTC	1 cut(s)	351
MseI	TTAA	2 cut(s)	654, 749
MspI	CCGG	2 cut(s)	130, 554
MwoI	GCNNNNNNNGC	1 cut(s)	277
NlaIII	CATG	3 cut(s)	106, 277, 709
NlaIV	GGNNCC	1 cut(s)	713
PaqCI	CACCTGC	1 cut(s)	361
PdmI	GAANNNNTTC	1 cut(s)	351
PfeI	GAWTC	2 cut(s)	352, 546
PflMI	CCANNNNNTGG	1 cut(s)	721
PkrI	GCNGC	1 cut(s)	590
PleI	GAGTC	2 cut(s)	431, 431
PpsI	GAGTC	2 cut(s)	431, 431
PspN4I	GGNNCC	1 cut(s)	713
PspOMI	GGGCCC	1 cut(s)	711
PspPI	GGNCC	2 cut(s)	711, 712
SalI	GTCGAC	1 cut(s)	690
SaqAI	TTAA	2 cut(s)	654, 749
SatI	GCNGC	1 cut(s)	589
Sau96I	GGNCC	2 cut(s)	711, 712
SchI	GAGTC	2 cut(s)	431, 432
SduI	GDGCHC	2 cut(s)	87, 715
SfaNI	GCATC	3 cut(s)	357, 442, 522
SfcI	CTRYAG	2 cut(s)	313, 625
Sse9I	AATT	5 cut(s)	153, 181, 347, 651, 685
SsiI	CCGC	2 cut(s)	162, 588
StyI	CCWWGG	1 cut(s)	461
TaaI	ACNGT	2 cut(s)	483, 668
TaqI	TCGA	2 cut(s)	44, 691
TasI	AATT	5 cut(s)	153, 181, 347, 651, 685
TauI	GCSGC	1 cut(s)	591
TfiI	GAWTC	2 cut(s)	352, 546
Tru1I	TTAA	2 cut(s)	654, 749
Tru9I	TTAA	2 cut(s)	654, 749
TscAI	CASTG	1 cut(s)	673
TspDTI	ATGAA	7 cut(s)	91, 137, 188, 290, 357, 624, 694
TspRI	CASTG	1 cut(s)	673
Van91I	CCANNNNNTGG	1 cut(s)	721
XapI	RAATTY	1 cut(s)	181
XmiI	GTMKAC	3 cut(s)	35, 624, 691
XmnI	GAANNNNTTC	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.