RchiOBHm_Chr2g0092771

Cystinosin homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0019888
Physical Location & Seq
Reverse (-)
6122260 .. 6126113
3854 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 465 bp
ATGGTTCATCTTGATTTCTGGCTCTTAATTACAATCAGGTACAGTTTGTATCTTGGTTGCTCTGCCAACTCATTCTTGGCTTTGGCTCATCTCTATCTTCAACTCAATTCAAGTTTTTATGACAGTCATCAAATATACTCCCCAGGTTTAGCATACATGAACTTCATAAGAAAGAGCACAGATGGATCAAGTATTATCTTTATTCTACTTGATCTTTCGGGAGGAGTGGGAAGTTATGCACAAATGGCCGTGCAGTCTATTGATCAAGATTCTTGGGTGAACTTCTATGGAAACATAGGGAAGACACTGCTATCTTTGATATGTGTATCATTTGATCTTCTTTTCATTTGCCAACATTATGTGCTGTATCCTTCCAAGAAGGCATTGATATCTCCTAAAATGATCACCAACAAGGAGGACTTGGAGCCCCTTGTCAGTTCTGATAATCACCTGCCAAGTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
PQ-loop

Protein Analysis

154

Amino Acids

17.31

Weight (kDa)

5.86

Isoelectric Point (pI)

50.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PQ-loop PF04193 52 - 88 1.6e-06 PQ loop repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019888)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0092771 RchiOBHm_Chr2g0092841
rosa_roxburghii Rroxscaffold_6G00400300 Rroxscaffold_7G00173110
rosa_samantha Rh2BG663400
rosa_wichuraiana Rw1G017750 Rw5G044000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 459
Acc36I ACCTGC 1 cut(s) 459
AclWI GGATC 1 cut(s) 193
AcoI YGGCCR 1 cut(s) 246
AfaI GTAC 1 cut(s) 41
AgsI TTSAA 2 cut(s) 101, 111
AjnI CCWGG 1 cut(s) 142
Alw21I GWGCWC 1 cut(s) 179
AlwI GGATC 1 cut(s) 193
AoxI GGCC 1 cut(s) 246
AsuHPI GGTGA 3 cut(s) 289, 397, 440
BanII GRGCYC 1 cut(s) 429
BbsI GAAGAC 1 cut(s) 308
Bbv12I GWGCWC 1 cut(s) 179
BccI CCATC 1 cut(s) 176
BceAI ACGGC 1 cut(s) 233
BciT130I CCWGG 1 cut(s) 144
BciVI GTATCC 1 cut(s) 378
BclI TGATCA 2 cut(s) 262, 402
BfuAI ACCTGC 1 cut(s) 459
BfuI GTATCC 1 cut(s) 378
Bme1390I CCNGG 1 cut(s) 144
BmiI GGNNCC 1 cut(s) 426
BmrFI CCNGG 1 cut(s) 144
BpiI GAAGAC 1 cut(s) 308
BsaJI CCNNGG 1 cut(s) 142
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 142
BseRI GAGGAG 1 cut(s) 237
BsgI GTGCAG 1 cut(s) 272
BshFI GGCC 1 cut(s) 248
BsiHKAI GWGCWC 1 cut(s) 179
BsnI GGCC 1 cut(s) 248
Bsp1286I GDGCHC 2 cut(s) 179, 429
Bsp143I GATC 5 cut(s) 185, 211, 262, 334, 402
BspANI GGCC 1 cut(s) 248
BspLI GGNNCC 1 cut(s) 426
BspMI ACCTGC 1 cut(s) 459
BspPI GGATC 1 cut(s) 193
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 5 cut(s) 185, 211, 262, 334, 402
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 2 cut(s) 44, 125
BstKTI GATC 5 cut(s) 188, 214, 265, 337, 405
BstMBI GATC 5 cut(s) 185, 211, 262, 334, 402
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 142
BstV2I GAAGAC 1 cut(s) 308
BsuI GTATCC 1 cut(s) 378
BsuRI GGCC 1 cut(s) 248
BtsI GCAGTG 1 cut(s) 305
BtsIMutI CAGTG 1 cut(s) 305
BveI ACCTGC 1 cut(s) 459
Csp6I GTAC 1 cut(s) 40
CviAII CATG 1 cut(s) 157
CviJI RGCY 5 cut(s) 22, 80, 86, 248, 427
CviKI_1 RGCY 5 cut(s) 22, 80, 86, 248, 427
CviQI GTAC 1 cut(s) 40
DpnI GATC 5 cut(s) 187, 213, 264, 336, 404
DpnII GATC 5 cut(s) 185, 211, 262, 334, 402
EaeI YGGCCR 1 cut(s) 246
Eco24I GRGCYC 1 cut(s) 429
Eco32I GATATC 1 cut(s) 390
EcoRII CCWGG 1 cut(s) 142
EcoRV GATATC 1 cut(s) 390
EcoT38I GRGCYC 1 cut(s) 429
FaeI CATG 1 cut(s) 160
FalI AAGNNNNNCTT 2 cut(s) 404, 436
FatI CATG 1 cut(s) 156
FbaI TGATCA 2 cut(s) 262, 402
FriOI GRGCYC 1 cut(s) 429
HaeIII GGCC 1 cut(s) 248
Hin1II CATG 1 cut(s) 160
HinfI GANTC 1 cut(s) 269
HphI GGTGA 3 cut(s) 289, 397, 440
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 2 cut(s) 442, 464
Hpy188III TCNNGA 3 cut(s) 11, 219, 266
Hpy8I GTNNAC 1 cut(s) 280
HpyAV CCTTC 2 cut(s) 373, 381
HpyCH4III ACNGT 2 cut(s) 44, 125
HpyCH4V TGCA 2 cut(s) 239, 253
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
Hsp92II CATG 1 cut(s) 160
Ksp22I TGATCA 2 cut(s) 262, 402
Kzo9I GATC 5 cut(s) 185, 211, 262, 334, 402
LmnI GCTCC 1 cut(s) 424
LpnPI CCDG 4 cut(s) 4, 22, 129, 156
MalI GATC 5 cut(s) 187, 213, 264, 336, 404
MboI GATC 5 cut(s) 185, 211, 262, 334, 402
MboII GAAGA 3 cut(s) 89, 313, 329
MhlI GDGCHC 2 cut(s) 179, 429
MluCI AATT 2 cut(s) 27, 106
MnlI CCTC 2 cut(s) 215, 409
MseI TTAA 1 cut(s) 26
MspR9I CCNGG 1 cut(s) 144
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 245
NdeII GATC 5 cut(s) 185, 211, 262, 334, 402
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 1 cut(s) 426
PaqCI CACCTGC 1 cut(s) 459
PfeI GAWTC 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 426
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
SaqAI TTAA 1 cut(s) 26
Sau3AI GATC 5 cut(s) 185, 211, 262, 334, 402
ScrFI CCNGG 1 cut(s) 144
SduI GDGCHC 2 cut(s) 179, 429
SetI ASST 3 cut(s) 41, 148, 453
Sse9I AATT 2 cut(s) 27, 106
StyD4I CCNGG 1 cut(s) 142
TaaI ACNGT 2 cut(s) 44, 125
TasI AATT 2 cut(s) 27, 106
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TscAI CASTG 1 cut(s) 312
TspDTI ATGAA 3 cut(s) 154, 173, 334
TspRI CASTG 1 cut(s) 312
XcmI CCANNNNNNNNNTGG 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.