RchiOBHm_Chr2g0092841

Cystinosin homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0019888
Physical Location & Seq
Reverse (-)
6232932 .. 6234292
1361 bp
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UTR
Exon/CDS
Intron
PRQ46791

Sequence Viewer

Length: 411 bp
ATGGCAATCCCTGTGATAATGGTGTGTGGCTATTTGCTGCAGTTTGTATCTTGCTCAATTCAAGTTTTTATGACAGTCATCAAATATACTCCCCAGGCATACATGAACTTCATAAGAAAGAGCACAGATGGATCAAGTATTATCTTTATTCTACTTGATCTTTCGGGAGGAGTGGGAAGTTATGCACAAATGGCCGTGCAGTCTATTGATCAAGATTCTTGGGTGAACTTCTATGGAAACATAGGGAAGACACTGCTATCTTTGATATGTGTATCATTTGATCTTCTTTTCATTTGCCAACATTATGTGCTGTATCCTTCCAAGAAGGCATTGATATCTCCTAAAATGATCACCAACAAGGAGGACTTGGAGCCCCTTGTCAGTTCTGATAATCACCTGCCAAGTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
PQ-loop

Protein Analysis

136

Amino Acids

15.14

Weight (kDa)

6.01

Isoelectric Point (pI)

49.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PQ-loop PF04193 19 - 70 4.3e-13 PQ loop repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019888)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0092771 RchiOBHm_Chr2g0092841
rosa_roxburghii Rroxscaffold_6G00400300 Rroxscaffold_7G00173110
rosa_samantha Rh2BG663400
rosa_wichuraiana Rw1G017750 Rw5G044000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 405
Acc36I ACCTGC 1 cut(s) 405
AclWI GGATC 1 cut(s) 139
AcoI YGGCCR 1 cut(s) 192
AgsI TTSAA 1 cut(s) 62
AjnI CCWGG 1 cut(s) 93
Alw21I GWGCWC 1 cut(s) 125
AlwI GGATC 1 cut(s) 139
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 1 cut(s) 37
AsuHPI GGTGA 3 cut(s) 235, 343, 386
BanII GRGCYC 1 cut(s) 375
BbsI GAAGAC 1 cut(s) 254
Bbv12I GWGCWC 1 cut(s) 125
BbvI GCAGC 1 cut(s) 24
BccI CCATC 1 cut(s) 122
BceAI ACGGC 1 cut(s) 179
BciT130I CCWGG 1 cut(s) 95
BciVI GTATCC 1 cut(s) 324
BclI TGATCA 2 cut(s) 208, 348
BfmI CTRYAG 1 cut(s) 38
BfuAI ACCTGC 1 cut(s) 405
BfuI GTATCC 1 cut(s) 324
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
Bme1390I CCNGG 1 cut(s) 95
BmiI GGNNCC 1 cut(s) 372
BmrFI CCNGG 1 cut(s) 95
BpiI GAAGAC 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 93
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 93
BseRI GAGGAG 1 cut(s) 183
BseXI GCAGC 1 cut(s) 24
BsgI GTGCAG 1 cut(s) 218
BshFI GGCC 1 cut(s) 194
BsiHKAI GWGCWC 1 cut(s) 125
BsnI GGCC 1 cut(s) 194
Bsp1286I GDGCHC 2 cut(s) 125, 375
Bsp143I GATC 5 cut(s) 131, 157, 208, 280, 348
BspANI GGCC 1 cut(s) 194
BspLI GGNNCC 1 cut(s) 372
BspMAI CTGCAG 1 cut(s) 42
BspMI ACCTGC 1 cut(s) 405
BspPI GGATC 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 5 cut(s) 131, 157, 208, 280, 348
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 76
BstKTI GATC 5 cut(s) 134, 160, 211, 283, 351
BstMBI GATC 5 cut(s) 131, 157, 208, 280, 348
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNI CCWGG 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 93
BstSFI CTRYAG 1 cut(s) 38
BstV1I GCAGC 1 cut(s) 24
BstV2I GAAGAC 1 cut(s) 254
BsuI GTATCC 1 cut(s) 324
BsuRI GGCC 1 cut(s) 194
BtsI GCAGTG 1 cut(s) 251
BtsIMutI CAGTG 1 cut(s) 251
BveI ACCTGC 1 cut(s) 405
CviAII CATG 1 cut(s) 103
CviJI RGCY 3 cut(s) 30, 194, 373
CviKI_1 RGCY 3 cut(s) 30, 194, 373
DpnI GATC 5 cut(s) 133, 159, 210, 282, 350
DpnII GATC 5 cut(s) 131, 157, 208, 280, 348
EaeI YGGCCR 1 cut(s) 192
Eco24I GRGCYC 1 cut(s) 375
Eco32I GATATC 1 cut(s) 336
EcoRII CCWGG 1 cut(s) 93
EcoRV GATATC 1 cut(s) 336
EcoT38I GRGCYC 1 cut(s) 375
FaeI CATG 1 cut(s) 106
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FatI CATG 1 cut(s) 102
FbaI TGATCA 2 cut(s) 208, 348
Fnu4HI GCNGC 1 cut(s) 38
FriOI GRGCYC 1 cut(s) 375
Fsp4HI GCNGC 1 cut(s) 38
GluI GCNGC 1 cut(s) 38
HaeIII GGCC 1 cut(s) 194
Hin1II CATG 1 cut(s) 106
HinfI GANTC 1 cut(s) 215
HphI GGTGA 3 cut(s) 235, 343, 386
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 2 cut(s) 388, 410
Hpy188III TCNNGA 2 cut(s) 165, 212
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 2 cut(s) 319, 327
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4V TGCA 3 cut(s) 40, 185, 199
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
Hsp92II CATG 1 cut(s) 106
Ksp22I TGATCA 2 cut(s) 208, 348
Kzo9I GATC 5 cut(s) 131, 157, 208, 280, 348
LmnI GCTCC 1 cut(s) 370
LpnPI CCDG 3 cut(s) 24, 80, 107
Lsp1109I GCAGC 1 cut(s) 24
MalI GATC 5 cut(s) 133, 159, 210, 282, 350
MboI GATC 5 cut(s) 131, 157, 208, 280, 348
MboII GAAGA 2 cut(s) 259, 275
MhlI GDGCHC 2 cut(s) 125, 375
MluCI AATT 1 cut(s) 57
MnlI CCTC 2 cut(s) 161, 355
MspR9I CCNGG 1 cut(s) 95
MvaI CCWGG 1 cut(s) 95
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeII GATC 5 cut(s) 131, 157, 208, 280, 348
NlaIII CATG 1 cut(s) 106
NlaIV GGNNCC 1 cut(s) 372
PaqCI CACCTGC 1 cut(s) 405
PfeI GAWTC 1 cut(s) 215
PkrI GCNGC 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
PspN4I GGNNCC 1 cut(s) 372
PstI CTGCAG 1 cut(s) 42
SatI GCNGC 1 cut(s) 38
Sau3AI GATC 5 cut(s) 131, 157, 208, 280, 348
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 2 cut(s) 125, 375
SetI ASST 1 cut(s) 399
SfcI CTRYAG 1 cut(s) 38
Sse9I AATT 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 76
TasI AATT 1 cut(s) 57
TfiI GAWTC 1 cut(s) 215
TscAI CASTG 1 cut(s) 258
TseI GCWGC 1 cut(s) 37
TspDTI ATGAA 3 cut(s) 100, 119, 280
TspRI CASTG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.