Rw1G017750

Cystinosin homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0019888
Physical Location & Seq
Forward (+)
39337407 .. 39338156
750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G017750.1

Sequence Viewer

Length: 342 bp
ATGACAGTCATCAAATATACTCCCCAGGCATACATGAACTTCATAAGAAAGAGCACAGATGGATTAAGTATTTTCTTTATTCTACTTGATCTTTCGGGAGGAGTGGGAAGTTATGCACAAATGGCCGTGCAGTCTATTGATCAAGATTCTTGGGTGAACTTCTATGGAAACATAGGGAAGACACTGCTATCTTTGATATGTGTATCATTTGATCTTCTTTTCATTTGCCAACATTATGTGCTGTATCCTTCCAAGAAGGCATTGATATCTCCTAAAATGATCACCAACAAGGAGGACTTGGAGCCCCTTGTCAGTTCTGATAATCACCGGCCAAGTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
PQ-loop

Protein Analysis

113

Amino Acids

12.7

Weight (kDa)

6.7

Isoelectric Point (pI)

49.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PQ-loop PF04193 2 - 47 2.4e-13 PQ loop repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019888)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0092771 RchiOBHm_Chr2g0092841
rosa_roxburghii Rroxscaffold_6G00400300 Rroxscaffold_7G00173110
rosa_samantha Rh2BG663400
rosa_wichuraiana Rw1G017750 Rw5G044000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 123, 329
AjnI CCWGG 1 cut(s) 24
Alw21I GWGCWC 1 cut(s) 56
AoxI GGCC 2 cut(s) 123, 329
AsuHPI GGTGA 3 cut(s) 166, 274, 317
BanII GRGCYC 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 56
BccI CCATC 1 cut(s) 53
BceAI ACGGC 1 cut(s) 110
BciT130I CCWGG 1 cut(s) 26
BciVI GTATCC 1 cut(s) 255
BclI TGATCA 2 cut(s) 139, 279
BfuI GTATCC 1 cut(s) 255
Bme1390I CCNGG 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 303
BmrFI CCNGG 1 cut(s) 26
BpiI GAAGAC 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 24
Bse118I RCCGGY 1 cut(s) 327
BseBI CCWGG 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 24
BseRI GAGGAG 1 cut(s) 114
BsgI GTGCAG 1 cut(s) 149
BshFI GGCC 2 cut(s) 125, 331
BsiHKAI GWGCWC 1 cut(s) 56
BsiSI CCGG 1 cut(s) 328
BsnI GGCC 2 cut(s) 125, 331
Bsp1286I GDGCHC 2 cut(s) 56, 306
Bsp143I GATC 4 cut(s) 88, 139, 211, 279
BspANI GGCC 2 cut(s) 125, 331
BspLI GGNNCC 1 cut(s) 303
BsrFI RCCGGY 1 cut(s) 327
BssAI RCCGGY 1 cut(s) 327
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 4 cut(s) 88, 139, 211, 279
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 7
BstKTI GATC 4 cut(s) 91, 142, 214, 282
BstMBI GATC 4 cut(s) 88, 139, 211, 279
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 24
BstV2I GAAGAC 1 cut(s) 185
BsuI GTATCC 1 cut(s) 255
BsuRI GGCC 2 cut(s) 125, 331
BtsI GCAGTG 1 cut(s) 182
BtsIMutI CAGTG 1 cut(s) 182
Cfr10I RCCGGY 1 cut(s) 327
CviAII CATG 1 cut(s) 34
CviJI RGCY 3 cut(s) 125, 304, 331
CviKI_1 RGCY 3 cut(s) 125, 304, 331
DpnI GATC 4 cut(s) 90, 141, 213, 281
DpnII GATC 4 cut(s) 88, 139, 211, 279
EaeI YGGCCR 2 cut(s) 123, 329
Eco24I GRGCYC 1 cut(s) 306
Eco32I GATATC 1 cut(s) 267
EcoRII CCWGG 1 cut(s) 24
EcoRV GATATC 1 cut(s) 267
EcoT38I GRGCYC 1 cut(s) 306
FaeI CATG 1 cut(s) 37
FaiI YATR 9 cut(s) 18, 31, 35, 44, 114, 165, 173, 199, 237
FalI AAGNNNNNCTT 2 cut(s) 281, 313
FatI CATG 1 cut(s) 33
FbaI TGATCA 2 cut(s) 139, 279
FriOI GRGCYC 1 cut(s) 306
HaeIII GGCC 2 cut(s) 125, 331
HapII CCGG 1 cut(s) 328
Hin1II CATG 1 cut(s) 37
HinfI GANTC 1 cut(s) 146
HpaII CCGG 1 cut(s) 328
HphI GGTGA 3 cut(s) 166, 274, 317
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 319, 341
Hpy188III TCNNGA 2 cut(s) 96, 143
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 2 cut(s) 250, 258
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4V TGCA 2 cut(s) 116, 130
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
Hsp92II CATG 1 cut(s) 37
Ksp22I TGATCA 2 cut(s) 139, 279
Kzo9I GATC 4 cut(s) 88, 139, 211, 279
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 2 cut(s) 11, 38
MalI GATC 4 cut(s) 90, 141, 213, 281
MboI GATC 4 cut(s) 88, 139, 211, 279
MboII GAAGA 2 cut(s) 190, 206
MhlI GDGCHC 2 cut(s) 56, 306
MnlI CCTC 2 cut(s) 92, 286
MseI TTAA 1 cut(s) 65
MspI CCGG 1 cut(s) 328
MspR9I CCNGG 1 cut(s) 26
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 122
NdeII GATC 4 cut(s) 88, 139, 211, 279
NlaIII CATG 1 cut(s) 37
NlaIV GGNNCC 1 cut(s) 303
PfeI GAWTC 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 303
SaqAI TTAA 1 cut(s) 65
Sau3AI GATC 4 cut(s) 88, 139, 211, 279
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 2 cut(s) 56, 306
StyD4I CCNGG 1 cut(s) 24
TaaI ACNGT 1 cut(s) 7
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TscAI CASTG 1 cut(s) 189
TspDTI ATGAA 3 cut(s) 31, 50, 211
TspRI CASTG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.