Rw5G044000

Cystinosin homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0019888
Physical Location & Seq
Forward (+)
77326730 .. 77327225
496 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G044000.1

Sequence Viewer

Length: 309 bp
ATGAACTTCATAAGAAAGAGCACAGATGGATTAAGTATTTTCTTTATTCTACTTGATCTTTCGGGAGGAGTGGGAAGTTATGCACAAATGGCCGTGCAGTCTATTGATCAAGATTCTTGGGTGAACTTCTATGGAAACATAGGGAAGACACTGCTATCTTTGATATGTGTATCATTTGATCTTCTTTTCATTTGCCAACATTATGTGCTGTATCCTTCCAAGAAGGCATTGATATCTCCTAAAATGATCACCAACAAGGAGGACTTGGAGCCCCTTGTCAGTTCTGATAATCACCGGCCAAGTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
PQ-loop

Protein Analysis

102

Amino Acids

11.41

Weight (kDa)

6.01

Isoelectric Point (pI)

49.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PQ-loop PF04193 1 - 36 1e-07 PQ loop repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019888)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0092771 RchiOBHm_Chr2g0092841
rosa_roxburghii Rroxscaffold_6G00400300 Rroxscaffold_7G00173110
rosa_samantha Rh2BG663400
rosa_wichuraiana Rw1G017750 Rw5G044000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 90, 296
Alw21I GWGCWC 1 cut(s) 23
AoxI GGCC 2 cut(s) 90, 296
AsuHPI GGTGA 3 cut(s) 133, 241, 284
BanII GRGCYC 1 cut(s) 273
BbsI GAAGAC 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 23
BccI CCATC 1 cut(s) 20
BceAI ACGGC 1 cut(s) 77
BciVI GTATCC 1 cut(s) 222
BclI TGATCA 2 cut(s) 106, 246
BfuI GTATCC 1 cut(s) 222
BmiI GGNNCC 1 cut(s) 270
BpiI GAAGAC 1 cut(s) 152
Bse118I RCCGGY 1 cut(s) 294
BseRI GAGGAG 1 cut(s) 81
BsgI GTGCAG 1 cut(s) 116
BshFI GGCC 2 cut(s) 92, 298
BsiHKAI GWGCWC 1 cut(s) 23
BsiSI CCGG 1 cut(s) 295
BsnI GGCC 2 cut(s) 92, 298
Bsp1286I GDGCHC 2 cut(s) 23, 273
Bsp143I GATC 4 cut(s) 55, 106, 178, 246
BspANI GGCC 2 cut(s) 92, 298
BspLI GGNNCC 1 cut(s) 270
BsrFI RCCGGY 1 cut(s) 294
BssAI RCCGGY 1 cut(s) 294
BssMI GATC 4 cut(s) 55, 106, 178, 246
BstKTI GATC 4 cut(s) 58, 109, 181, 249
BstMBI GATC 4 cut(s) 55, 106, 178, 246
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstV2I GAAGAC 1 cut(s) 152
BsuI GTATCC 1 cut(s) 222
BsuRI GGCC 2 cut(s) 92, 298
BtsI GCAGTG 1 cut(s) 149
BtsIMutI CAGTG 1 cut(s) 149
Cfr10I RCCGGY 1 cut(s) 294
CviJI RGCY 3 cut(s) 92, 271, 298
CviKI_1 RGCY 3 cut(s) 92, 271, 298
DpnI GATC 4 cut(s) 57, 108, 180, 248
DpnII GATC 4 cut(s) 55, 106, 178, 246
EaeI YGGCCR 2 cut(s) 90, 296
Eco24I GRGCYC 1 cut(s) 273
Eco32I GATATC 1 cut(s) 234
EcoRV GATATC 1 cut(s) 234
EcoT38I GRGCYC 1 cut(s) 273
FaiI YATR 6 cut(s) 11, 81, 132, 140, 166, 204
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FbaI TGATCA 2 cut(s) 106, 246
FriOI GRGCYC 1 cut(s) 273
HaeIII GGCC 2 cut(s) 92, 298
HapII CCGG 1 cut(s) 295
HinfI GANTC 1 cut(s) 113
HpaII CCGG 1 cut(s) 295
HphI GGTGA 3 cut(s) 133, 241, 284
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 2 cut(s) 286, 308
Hpy188III TCNNGA 2 cut(s) 63, 110
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 2 cut(s) 217, 225
HpyCH4V TGCA 2 cut(s) 83, 97
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
Ksp22I TGATCA 2 cut(s) 106, 246
Kzo9I GATC 4 cut(s) 55, 106, 178, 246
LmnI GCTCC 1 cut(s) 268
MalI GATC 4 cut(s) 57, 108, 180, 248
MboI GATC 4 cut(s) 55, 106, 178, 246
MboII GAAGA 2 cut(s) 157, 173
MhlI GDGCHC 2 cut(s) 23, 273
MnlI CCTC 2 cut(s) 59, 253
MseI TTAA 1 cut(s) 32
MspI CCGG 1 cut(s) 295
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 4 cut(s) 55, 106, 178, 246
NlaIV GGNNCC 1 cut(s) 270
PfeI GAWTC 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 270
SaqAI TTAA 1 cut(s) 32
Sau3AI GATC 4 cut(s) 55, 106, 178, 246
SduI GDGCHC 2 cut(s) 23, 273
SgeI CNNG 9 cut(s) 65, 75, 106, 122, 129, 232, 268, 277, 287
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TscAI CASTG 1 cut(s) 156
TspDTI ATGAA 2 cut(s) 17, 178
TspRI CASTG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.