Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019316

Physical Location & Seq

Genomic Coordinates Reverse (-)

6858905 .. 6859430

Gene Structure 526 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAAGTCGCTTGCTCCTTCAGCTTTTTCTACGAATATTGGCACTCTGGGAACTGCTTGCGCTCCTACTCGAACCGAGATAACTGTCAGCCTAAAGCAATTTATCTGCTACATATCGGCTGGTATCTTCATACTAGTAGGGAGCTTGTTTTGCAGTATAATGATTGCTACTCTGCTTATGAAAGTTGCAGGTGCTGATCAAGAACATCGACCTAGCGATATGAAATCCAATACAACATTCAAAGATGTCAAGCGTGTTGATGAGGCTAAAGCTGAGCTCGAGGAAATTGTTCACTATCTTCGAAATCCCGAGGTGTTTCTTGTCGGTCCACCCGGCACAGGTAAGACTATGTTAGCCAGAGCTGTTGCAACAGAAGCCGACGTTACCTTTCTTCGCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04139 map04139

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

133

Amino Acids

14.41

Weight (kDa)

7.72

Isoelectric Point (pI)

35.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	105 - 133	3.8e-08	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0019316)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g06990
rosa_chinensis	RchiOBHm_Chr2g0093611
rosa_multiflora	Rmu_sc0002126.1_g000021 Rmu_sc0021295.1_g000003
rosa_samantha	Rh2AG084400 Rh2BG085000 Rh2CG087300 Rh2DG083000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	179
Acc36I	ACCTGC	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	338
AgsI	TTSAA	1 cut(s)	241
AhlI	ACTAGT	1 cut(s)	133
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AluBI	AGCT	5 cut(s)	23, 144, 272, 277, 362
AluI	AGCT	5 cut(s)	23, 144, 272, 277, 362
Alw21I	GWGCWC	1 cut(s)	279
AlwNI	CAGNNNCTG	1 cut(s)	194
Ama87I	CYCGRG	2 cut(s)	278, 308
Asp700I	GAANNNNTTC	1 cut(s)	288
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	326
AsuC2I	CCSGG	1 cut(s)	333
AsuII	TTCGAA	1 cut(s)	301
AvaI	CYCGRG	2 cut(s)	278, 308
AvaII	GGWCC	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	279
BclI	TGATCA	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	333
BcuI	ACTAGT	1 cut(s)	133
BfaI	CTAG	2 cut(s)	134, 213
BfuAI	ACCTGC	1 cut(s)	179
BlpI	GCTNAGC	1 cut(s)	273
Bme1390I	CCNGG	1 cut(s)	333
Bme18I	GGWCC	1 cut(s)	326
BmeT110I	CYCGRG	2 cut(s)	278, 308
BmgT120I	GGNCC	1 cut(s)	326
BmrFI	CCNGG	1 cut(s)	333
Bpu1102I	GCTNAGC	1 cut(s)	273
Bpu14I	TTCGAA	1 cut(s)	301
BpuMI	CCSGG	1 cut(s)	333
BsaJI	CCNNGG	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	1 cut(s)	338
BseDI	CCNNGG	1 cut(s)	309
BseLI	CCNNNNNNNGG	1 cut(s)	338
BseMII	CTCAG	1 cut(s)	264
BsiHKAI	GWGCWC	1 cut(s)	279
BsiHKCI	CYCGRG	2 cut(s)	278, 308
BsiSI	CCGG	1 cut(s)	333
BslI	CCNNNNNNNGG	1 cut(s)	338
BsoBI	CYCGRG	2 cut(s)	278, 308
Bsp119I	TTCGAA	1 cut(s)	301
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	1 cut(s)	196
Bsp1720I	GCTNAGC	1 cut(s)	273
BspCNI	CTCAG	1 cut(s)	265
BspMI	ACCTGC	1 cut(s)	179
BspT104I	TTCGAA	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	1 cut(s)	196
Bst4CI	ACNGT	1 cut(s)	85
BstBI	TTCGAA	1 cut(s)	301
BstC8I	GCNNGC	2 cut(s)	12, 58
BstDEI	CTNAG	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 150, 374
BstNSI	RCATGY	1 cut(s)	400
BstSCI	CCNGG	1 cut(s)	331
BveI	ACCTGC	1 cut(s)	179
Cac8I	GCNNGC	2 cut(s)	12, 58
CaiI	CAGNNNCTG	1 cut(s)	194
CfoI	GCGC	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	326
CviAII	CATG	1 cut(s)	397
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
Ecl136II	GAGCTC	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	279
Eco47I	GGWCC	1 cut(s)	326
Eco53kI	GAGCTC	1 cut(s)	277
Eco88I	CYCGRG	2 cut(s)	278, 308
EcoICRI	GAGCTC	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	279
FaeI	CATG	1 cut(s)	400
FaiI	YATR	7 cut(s)	113, 131, 158, 179, 221, 350, 398
FatI	CATG	1 cut(s)	396
FbaI	TGATCA	1 cut(s)	196
FriOI	GRGCYC	1 cut(s)	279
FspBI	CTAG	2 cut(s)	134, 213
GlaI	GCGC	1 cut(s)	61
HapII	CCGG	1 cut(s)	333
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	1 cut(s)	400
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HpaII	CCGG	1 cut(s)	333
Hpy166II	GTNNAC	2 cut(s)	292, 329
Hpy188III	TCNNGA	2 cut(s)	200, 308
Hpy8I	GTNNAC	2 cut(s)	292, 329
Hpy99I	CGWCG	1 cut(s)	383
HpyAV	CCTTC	1 cut(s)	27
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	3 cut(s)	153, 188, 368
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 150, 374
HpyF3I	CTNAG	1 cut(s)	273
HpySE526I	ACGT	1 cut(s)	381
Hsp92II	CATG	1 cut(s)	400
HspAI	GCGC	1 cut(s)	60
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	196
LmnI	GCTCC	3 cut(s)	19, 67, 141
LpnPI	CCDG	6 cut(s)	32, 105, 174, 324, 346, 370
MaeI	CTAG	2 cut(s)	134, 213
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	3 cut(s)	118, 290, 383
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	2 cut(s)	98, 285
MnlI	CCTC	3 cut(s)	256, 274, 304
MroXI	GAANNNNTTC	1 cut(s)	288
MspI	CCGG	1 cut(s)	333
MspR9I	CCNGG	1 cut(s)	333
MwoI	GCNNNNNNNGC	3 cut(s)	20, 150, 374
NciI	CCSGG	1 cut(s)	333
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	1 cut(s)	400
NspI	RCATGY	1 cut(s)	400
NspV	TTCGAA	1 cut(s)	301
PaeR7I	CTCGAG	1 cut(s)	278
PaqCI	CACCTGC	1 cut(s)	179
PdmI	GAANNNNTTC	1 cut(s)	288
Psp124BI	GAGCTC	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	326
PspXI	VCTCGAGB	1 cut(s)	278
PstNI	CAGNNNCTG	1 cut(s)	194
SacI	GAGCTC	1 cut(s)	279
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	1 cut(s)	326
ScrFI	CCNGG	1 cut(s)	333
SduI	GDGCHC	1 cut(s)	279
Sfr274I	CTCGAG	1 cut(s)	278
SfuI	TTCGAA	1 cut(s)	301
SinI	GGWCC	1 cut(s)	326
SlaI	CTCGAG	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
SpeI	ACTAGT	1 cut(s)	133
Sse9I	AATT	2 cut(s)	98, 285
SspI	AATATT	1 cut(s)	37
SspMI	CTAG	2 cut(s)	134, 213
SstI	GAGCTC	1 cut(s)	279
StyD4I	CCNGG	1 cut(s)	331
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	4 cut(s)	70, 208, 279, 301
TaqII	GACCGA	1 cut(s)	314
TasI	AATT	2 cut(s)	98, 285
TspDTI	ATGAA	4 cut(s)	17, 118, 194, 236
VpaK11BI	GGWCC	1 cut(s)	326
XceI	RCATGY	1 cut(s)	400
XhoI	CTCGAG	1 cut(s)	278
XmnI	GAANNNNTTC	1 cut(s)	288
XspI	CTAG	2 cut(s)	134, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.