RchiOBHm_Chr2g0098661

Belongs to the MIP aquaporin (TC 1.A.8) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0019775
Physical Location & Seq
Reverse (-)
11056501 .. 11056998
498 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 225 bp
ATGGTTCACCCGGCCACCATACCTATTACTGGGACTGGGATCAACCCTGCTAGGAGTTTTGCTGCTGCTGTAATCTACAACAATGACAAAGTCTGGGACGACCAGTGGATATTCTGGGTCGGACCATTCATTGGAGCTCTGATAGCAGCAGCTTATAACCAGTACGTACTGAGGGCATCAGCTAGTAAAGCCTTCAGATCTTTCCACAACAATACCACCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MIP

Protein Analysis

74

Amino Acids

8.17

Weight (kDa)

9.4

Isoelectric Point (pI)

18.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIP PF00230 2 - 51 1.3e-17 Major intrinsic protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019775)

Species Orthologous Gene IDs
malus_domestica MD00G1173200.v1.1 MD07G1136400.v1.1
pyrus_communis pycom07g13370
rosa_chinensis RchiOBHm_Chr2g0098661
rosa_multiflora Rmu_co8012854.1_g000001
rosa_samantha Rh2AG121800 Rh2CG126400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 156
AccB7I CCANNNNNTGG 1 cut(s) 131
AclWI GGATC 1 cut(s) 47
AcoI YGGCCR 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 178
AfaI GTAC 2 cut(s) 164, 168
AfiI CCNNNNNNNGG 2 cut(s) 29, 131
AluBI AGCT 3 cut(s) 137, 152, 182
AluI AGCT 3 cut(s) 137, 152, 182
Alw21I GWGCWC 1 cut(s) 139
AlwI GGATC 1 cut(s) 47
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 4 cut(s) 62, 65, 146, 149
AspS9I GGNCC 1 cut(s) 122
AsuC2I CCSGG 1 cut(s) 11
AvaII GGWCC 1 cut(s) 122
BanII GRGCYC 1 cut(s) 139
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 4 cut(s) 49, 52, 158, 161
BcnI CCSGG 1 cut(s) 11
BfaI CTAG 2 cut(s) 51, 183
BglII AGATCT 1 cut(s) 197
BisI GCNGC 4 cut(s) 63, 66, 147, 150
BlsI GCNGC 4 cut(s) 64, 67, 148, 151
Bme1390I CCNGG 1 cut(s) 11
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 122
BmrFI CCNGG 1 cut(s) 11
BmrI ACTGGG 2 cut(s) 39, 45
BmsI GCATC 1 cut(s) 185
BmuI ACTGGG 2 cut(s) 39, 45
BpuMI CCSGG 1 cut(s) 11
BsaAI YACGTR 1 cut(s) 166
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 131
Bse1I ACTGG 4 cut(s) 34, 40, 103, 160
BseLI CCNNNNNNNGG 2 cut(s) 29, 131
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 4 cut(s) 34, 40, 103, 160
BseXI GCAGC 4 cut(s) 49, 52, 158, 161
BshFI GGCC 1 cut(s) 14
BsiHKAI GWGCWC 1 cut(s) 139
BsiSI CCGG 1 cut(s) 11
BslFI GGGAC 2 cut(s) 46, 110
BslI CCNNNNNNNGG 2 cut(s) 29, 131
BsmFI GGGAC 2 cut(s) 46, 110
BsnI GGCC 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 139
Bsp143I GATC 2 cut(s) 39, 197
BspANI GGCC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 162
BspPI GGATC 1 cut(s) 47
BsrI ACTGG 4 cut(s) 34, 40, 103, 160
BssMI GATC 2 cut(s) 39, 197
BstBAI YACGTR 1 cut(s) 166
BstDEI CTNAG 1 cut(s) 170
BstKTI GATC 2 cut(s) 42, 200
BstMBI GATC 2 cut(s) 39, 197
BstMWI GCNNNNNNNGC 2 cut(s) 143, 188
BstSCI CCNGG 1 cut(s) 9
BstSNI TACGTA 1 cut(s) 166
BstV1I GCAGC 4 cut(s) 49, 52, 158, 161
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
BsuRI GGCC 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 122
Csp6I GTAC 2 cut(s) 163, 167
CviJI RGCY 5 cut(s) 14, 137, 152, 182, 191
CviKI_1 RGCY 5 cut(s) 14, 137, 152, 182, 191
CviQI GTAC 2 cut(s) 163, 167
DdeI CTNAG 1 cut(s) 170
DpnI GATC 2 cut(s) 41, 199
DpnII GATC 2 cut(s) 39, 197
EaeI YGGCCR 1 cut(s) 12
Ecl136II GAGCTC 1 cut(s) 137
Eco105I TACGTA 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 122
Eco53kI GAGCTC 1 cut(s) 137
Eco57I CTGAAG 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 137
EcoT38I GRGCYC 1 cut(s) 139
FaiI YATR 2 cut(s) 20, 156
FaqI GGGAC 2 cut(s) 46, 110
Fnu4HI GCNGC 4 cut(s) 63, 66, 147, 150
FriOI GRGCYC 1 cut(s) 139
Fsp4HI GCNGC 4 cut(s) 63, 66, 147, 150
FspBI CTAG 2 cut(s) 51, 183
GluI GCNGC 4 cut(s) 63, 66, 147, 150
HaeIII GGCC 1 cut(s) 14
HapII CCGG 1 cut(s) 11
HpaII CCGG 1 cut(s) 11
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 3 cut(s) 122, 141, 197
Hpy8I GTNNAC 1 cut(s) 7
HpyAV CCTTC 1 cut(s) 202
HpyCH4IV ACGT 1 cut(s) 165
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 188
HpyF3I CTNAG 1 cut(s) 170
HpySE526I ACGT 1 cut(s) 165
Kzo9I GATC 2 cut(s) 39, 197
LmnI GCTCC 1 cut(s) 134
LpnPI CCDG 8 cut(s) 15, 21, 24, 60, 79, 100, 116, 173
Lsp1109I GCAGC 4 cut(s) 49, 52, 158, 161
LweI GCATC 1 cut(s) 185
MaeI CTAG 2 cut(s) 51, 183
MaeII ACGT 1 cut(s) 165
MalI GATC 2 cut(s) 41, 199
MboI GATC 2 cut(s) 39, 197
MflI RGATCY 1 cut(s) 197
MhlI GDGCHC 1 cut(s) 139
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 1 cut(s) 165
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 11
MwoI GCNNNNNNNGC 2 cut(s) 143, 188
NciI CCSGG 1 cut(s) 11
NdeII GATC 2 cut(s) 39, 197
PflFI GACNNNGTC 1 cut(s) 89
PflMI CCANNNNNTGG 1 cut(s) 131
PkrI GCNGC 4 cut(s) 64, 67, 148, 151
Ppu21I YACGTR 1 cut(s) 166
PsiI TTATAA 1 cut(s) 156
Psp124BI GAGCTC 1 cut(s) 139
PspPI GGNCC 1 cut(s) 122
PsuI RGATCY 1 cut(s) 197
PsyI GACNNNGTC 1 cut(s) 89
RsaI GTAC 2 cut(s) 164, 168
RsaNI GTAC 2 cut(s) 163, 167
SacI GAGCTC 1 cut(s) 139
SatI GCNGC 4 cut(s) 63, 66, 147, 150
Sau3AI GATC 2 cut(s) 39, 197
Sau96I GGNCC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 11
SduI GDGCHC 1 cut(s) 139
SetI ASST 5 cut(s) 25, 139, 154, 168, 184
SfaNI GCATC 1 cut(s) 185
SinI GGWCC 1 cut(s) 122
SnaBI TACGTA 1 cut(s) 166
SspMI CTAG 2 cut(s) 51, 183
SstI GAGCTC 1 cut(s) 139
StyD4I CCNGG 1 cut(s) 9
TaiI ACGT 1 cut(s) 168
TscAI CASTG 1 cut(s) 110
TseI GCWGC 4 cut(s) 62, 65, 146, 149
TspDTI ATGAA 1 cut(s) 118
TspRI CASTG 1 cut(s) 110
Tth111I GACNNNGTC 1 cut(s) 89
Van91I CCANNNNNTGG 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 122
XspI CTAG 2 cut(s) 51, 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.