RchiOBHm_Chr2g0107261

ARM-repeat Tetratricopeptide repeat (TPR)-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0017179
Physical Location & Seq
Forward (+)
18571518 .. 18573327
1810 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1713 bp
ATGGAATCAAAATCCCAAACCAACAAGACCAAAAAGACTCCCAAACATCCCTCTGAGCCTGTGTGTACTAAACCCTCTTGCTTCTTCTGCACCATGAATGAACCAAACCCTTCTTTCAGAAAATCCAAAATCATTAAGCTCTTCAAGGACTTGCCTCTCAAAAATGACCAAGAGCAAGTCCTTGCACTAAGCTCTCTCTGGAACATAGCCATGAAGCAACCTAACGACCCTGAATTCCCATCGCTTGGAATTTTCGAATGCATGGCAAAGCTCATCAACAAAGGTATCAACGACAAAAAGTGGCTGCTTAGCGACCAGAACATATACATCCCTTACTATGCTGCTCATATCGTTGGCTCTTACACCATGAACAAGGCTCAGTTTGCAGAAAAGGCTTTGAAATCCGGTGTAGTTCTGCCTCTAATGGAGTTGATGAGAGGTAAGATCACTTGGGTTGAGCAAAGAGTGGCAGTTCGAGCTCTTGGTCACATGGCTGGTCATGACGGGATCGTTGAGTCCATTATTGCTTTGAAGCATGAAGTCAAGATTGTCGAGTTGGCTATGAAGATAGCCTCTACATGTTTGAAGAGGGTAAAGGCTGAGGAATGGGGTAGTCAGCTTCAGTGCTGGTCCCTAAATCTTCTCAACTGCTTTGTGAGCAAAGAAAGGTGTTTAGGTTTGATTTGCAAGAAGGAATTCTTGGTTGAAGTTTGTGGGATTTGGGGTGGTTTAGCAAATCCAAACTCACCTGGTGGAATTGGGTTGTTGAAAGCACTTTGTCAAACCAAGTTTGGAAGACAAAGTGTGGCAAATTCACAAGAAGTTATAGAGAGATTATGTAGTCTCTCAAGGTCTTCAGATGAATGGAAATTAATGGCAGTTGATTGTCTTTTGCTGCTTCTCAAAGACCCCGAAACCCGAATCAAAGTGGTGGAGATTTCAGTTGTGTATCTTGTCGATTTGGTTGAAATGAGAAAACCAAAACTAGGAGACAGAATCACACAGATGCTTTTGCAAGATTACCATAAAATCAAGTATGGGGACTTGAGATTGGGGAGCAAGAAAGCTGAGAGAGCATTGGAGGAGATATGGGATTTGAAGGTTGAGAGAAAAAAGAAGGAGAAGTTAATGTCAAAACAAGAAATCAGAGAGAGAAAATCAATGGTAGGAAAGTTGAAAAAGCAAGGGAATATGAGTTTTTGGGCAGGGAATATTGAAAAGGCTGTGATTGAATACTCAGAAGCGTTGGATTTGTGCCCTTTAAAAATGAGGAGGGAAAGGATTGTGGTTTATAGTAATAGGGCACAGTGTTACTTGTTGATGAAGAATCCAGAAGCAGCCATTAGTGACACAACCAGAGCTCTGTGTTTGTCAACCGGTGCGGCGAGGGTTCATGGTAAGAGCCTGTGGAGGAGGTCACAGGCTTATGAGATGAAAGGGTTGGCAAGGGAGAGCTTGATGGATTGCTTGGAGTTTGTCAATGGAAAATGTTTGATGTCTGAACAGGGGAAAGGTGGGAGGATCCCGTACTACGCTGCACGAATGATTAGCAAGCAGATGAGGCCCACGTGGATGTATAACATACCTGAAGAGGACTTCCCTTTTACAGGTAAGCCTACCATTGTAGAAGAAATGTTCACTGAAAGAAGGAGAAAGGTAAAGAAGGGGAGAAGAAAAGAAAAGGGTGTCAATGTCAATGACAAGACAGGGTAG

Protein Analysis

570

Amino Acids

65.03

Weight (kDa)

9.51

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_7 PF26524 21 - 198 7.1e-88 Plant ARM repeat
ARM_7 PF26524 198 - 230 1.6e-11 Plant ARM repeat
TPR_BSK1_C PF25575 374 - 458 1.1e-06 Serine/threonine-protein kinase BSK1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017179)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50030
fragaria_vesca FvH4_1g17090
malus_domestica MD15G1292100.v1.1
prunus_persica Prupe.6G225200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0107261
rosa_laevigata RLG00000017565
rosa_multiflora Rmu_sc0006416.1_g000025
rosa_rugosa Rorug02G0141400
rosa_samantha Rh2AG192100 Rh2BG204000 Rh2CG197400 Rh2DG199400
rosa_wichuraiana Rw2G015200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 245
AciI CCGC 1 cut(s) 1382
AclWI GGATC 3 cut(s) 515, 1516, 1529
AcsI RAATTY 4 cut(s) 233, 249, 695, 811
AcuI CTGAAG 3 cut(s) 605, 840, 1608
AcvI CACGTG 1 cut(s) 1569
AdeI CACNNNGTG 1 cut(s) 752
AfaI GTAC 2 cut(s) 67, 1529
AfiI CCNNNNNNNGG 3 cut(s) 245, 986, 1607
AflIII ACRYGT 1 cut(s) 578
AgeI ACCGGT 1 cut(s) 1376
AjnI CCWGG 1 cut(s) 748
AjuI GAANNNNNNNTTGG 2 cut(s) 683, 715
AluBI AGCT 8 cut(s) 139, 192, 271, 479, 619, 1067, 1361, 1455
AluI AGCT 8 cut(s) 139, 192, 271, 479, 619, 1067, 1361, 1455
Alw21I GWGCWC 2 cut(s) 481, 1363
Alw26I GTCTC 2 cut(s) 848, 984
AlwI GGATC 3 cut(s) 515, 1516, 1529
AoxI GGCC 1 cut(s) 1562
ApeKI GCWGC 5 cut(s) 304, 341, 895, 1337, 1535
ApoI RAATTY 4 cut(s) 233, 249, 695, 811
AseI ATTAAT 1 cut(s) 872
AsiGI ACCGGT 1 cut(s) 1376
Asp700I GAANNNNTTC 1 cut(s) 695
AspS9I GGNCC 2 cut(s) 630, 1563
AsuHPI GGTGA 1 cut(s) 738
AsuII TTCGAA 1 cut(s) 255
AvaII GGWCC 1 cut(s) 630
BaeGI GKGCMC 2 cut(s) 1259, 1306
BaeI ACNNNNGTAYC 2 cut(s) 268, 301
BamHI GGATCC 1 cut(s) 1521
BanII GRGCYC 2 cut(s) 481, 1363
BbrPI CACGTG 1 cut(s) 1569
BbsI GAAGAC 2 cut(s) 802, 846
Bbv12I GWGCWC 2 cut(s) 481, 1363
BbvCI CCTCAGC 1 cut(s) 600
BbvI GCAGC 5 cut(s) 291, 328, 882, 1349, 1522
BccI CCATC 2 cut(s) 247, 1453
BciT130I CCWGG 1 cut(s) 750
BcoDI GTCTC 2 cut(s) 848, 984
BfaI CTAG 1 cut(s) 986
BisI GCNGC 6 cut(s) 305, 342, 896, 1338, 1383, 1536
BlpI GCTNAGC 1 cut(s) 308
BlsI GCNGC 6 cut(s) 306, 343, 897, 1339, 1384, 1537
Bme1390I CCNGG 1 cut(s) 750
Bme18I GGWCC 1 cut(s) 630
BmgT120I GGNCC 2 cut(s) 630, 1563
BmiI GGNNCC 2 cut(s) 632, 1523
BmrFI CCNGG 1 cut(s) 750
BmsI GCATC 1 cut(s) 996
BpiI GAAGAC 2 cut(s) 802, 846
Bpu10I CCTNAGC 1 cut(s) 600
Bpu1102I GCTNAGC 1 cut(s) 308
Bpu14I TTCGAA 1 cut(s) 255
BpuEI CTTGAG 2 cut(s) 832, 1066
BsaAI YACGTR 1 cut(s) 1569
BsaWI WCCGGW 2 cut(s) 404, 1376
Bsc4I CCNNNNNNNGG 3 cut(s) 245, 986, 1607
Bse118I RCCGGY 1 cut(s) 1376
BseBI CCWGG 1 cut(s) 750
BseGI GGATG 3 cut(s) 46, 327, 1578
BseLI CCNNNNNNNGG 3 cut(s) 245, 986, 1607
BseMII CTCAG 5 cut(s) 45, 392, 591, 1059, 1251
BseRI GAGGAG 3 cut(s) 1097, 1285, 1426
BseSI GKGCMC 2 cut(s) 1259, 1306
BseXI GCAGC 5 cut(s) 291, 328, 882, 1349, 1522
BsgI GTGCAG 2 cut(s) 73, 1521
BshFI GGCC 1 cut(s) 1564
BshTI ACCGGT 1 cut(s) 1376
BsiHKAI GWGCWC 2 cut(s) 481, 1363
BsiSI CCGG 2 cut(s) 405, 1377
BslFI GGGAC 2 cut(s) 616, 1055
BslI CCNNNNNNNGG 3 cut(s) 245, 986, 1607
BsmAI GTCTC 2 cut(s) 848, 984
BsmFI GGGAC 2 cut(s) 616, 1055
BsmI GAATGC 1 cut(s) 263
BsnI GGCC 1 cut(s) 1564
Bsp119I TTCGAA 1 cut(s) 255
Bsp1286I GDGCHC 4 cut(s) 481, 1259, 1306, 1363
Bsp143I GATC 3 cut(s) 444, 507, 1521
Bsp1720I GCTNAGC 1 cut(s) 308
BspACI CCGC 1 cut(s) 1382
BspANI GGCC 1 cut(s) 1564
BspCNI CTCAG 5 cut(s) 46, 391, 592, 1060, 1250
BspHI TCATGA 1 cut(s) 499
BspLI GGNNCC 2 cut(s) 632, 1523
BspPI GGATC 3 cut(s) 515, 1516, 1529
BspQI GCTCTTC 1 cut(s) 146
BspT104I TTCGAA 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 1376
BssAI RCCGGY 1 cut(s) 1376
BssMI GATC 3 cut(s) 444, 507, 1521
Bst2UI CCWGG 1 cut(s) 750
Bst4CI ACNGT 1 cut(s) 1308
Bst6I CTCTTC 3 cut(s) 146, 581, 1584
BstBAI YACGTR 1 cut(s) 1569
BstBI TTCGAA 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 1553
BstDEI CTNAG 7 cut(s) 54, 188, 308, 378, 600, 1068, 1237
BstENI CCTNNNNNAGG 1 cut(s) 1605
BstF5I GGATG 3 cut(s) 46, 327, 1578
BstKTI GATC 3 cut(s) 447, 510, 1524
BstMAI GTCTC 2 cut(s) 848, 984
BstMBI GATC 3 cut(s) 444, 507, 1521
BstMWI GCNNNNNNNGC 7 cut(s) 87, 383, 392, 476, 657, 1073, 1561
BstNI CCWGG 1 cut(s) 750
BstNSI RCATGY 1 cut(s) 582
BstSCI CCNGG 1 cut(s) 748
BstSLI GKGCMC 2 cut(s) 1259, 1306
BstV1I GCAGC 5 cut(s) 291, 328, 882, 1349, 1522
BstV2I GAAGAC 2 cut(s) 802, 846
BstX2I RGATCY 1 cut(s) 1521
BstYI RGATCY 1 cut(s) 1521
BsuRI GGCC 1 cut(s) 1564
BtgZI GCGATG 1 cut(s) 225
BtsCI GGATG 3 cut(s) 46, 327, 1578
BtsIMutI CAGTG 3 cut(s) 629, 1313, 1638
Cac8I GCNNGC 1 cut(s) 1553
CciI TCATGA 1 cut(s) 499
Cfr10I RCCGGY 1 cut(s) 1376
Cfr13I GGNCC 2 cut(s) 630, 1563
CsiI ACCWGGT 1 cut(s) 748
Csp6I GTAC 2 cut(s) 66, 1528
CspAI ACCGGT 1 cut(s) 1376
CviAII CATG 9 cut(s) 94, 211, 262, 367, 490, 500, 536, 579, 1394
CviQI GTAC 2 cut(s) 66, 1528
DdeI CTNAG 7 cut(s) 54, 188, 308, 378, 600, 1068, 1237
DpnI GATC 3 cut(s) 446, 509, 1523
DpnII GATC 3 cut(s) 444, 507, 1521
DraI TTTAAA 1 cut(s) 1263
DraIII CACNNNGTG 1 cut(s) 752
Eam1104I CTCTTC 3 cut(s) 146, 581, 1584
EarI CTCTTC 3 cut(s) 146, 581, 1584
Ecl136II GAGCTC 2 cut(s) 479, 1361
Eco24I GRGCYC 2 cut(s) 481, 1363
Eco47I GGWCC 1 cut(s) 630
Eco53kI GAGCTC 2 cut(s) 479, 1361
Eco57I CTGAAG 3 cut(s) 605, 840, 1608
Eco72I CACGTG 1 cut(s) 1569
EcoICRI GAGCTC 2 cut(s) 479, 1361
EcoNI CCTNNNNNAGG 1 cut(s) 1605
EcoRI GAATTC 2 cut(s) 233, 695
EcoRII CCWGG 1 cut(s) 748
EcoT22I ATGCAT 1 cut(s) 263
EcoT38I GRGCYC 2 cut(s) 481, 1363
FaeI CATG 9 cut(s) 97, 214, 265, 370, 493, 503, 539, 582, 1397
FalI AAGNNNNNCTT 2 cut(s) 683, 715
FaqI GGGAC 2 cut(s) 616, 1055
FatI CATG 9 cut(s) 93, 210, 261, 366, 489, 499, 535, 578, 1393
Fnu4HI GCNGC 6 cut(s) 305, 342, 896, 1338, 1383, 1536
FokI GGATG 3 cut(s) 33, 314, 1585
FriOI GRGCYC 2 cut(s) 481, 1363
Fsp4HI GCNGC 6 cut(s) 305, 342, 896, 1338, 1383, 1536
FspBI CTAG 1 cut(s) 986
GluI GCNGC 6 cut(s) 305, 342, 896, 1338, 1383, 1536
HaeIII GGCC 1 cut(s) 1564
HapII CCGG 2 cut(s) 405, 1377
Hin1II CATG 9 cut(s) 97, 214, 265, 370, 493, 503, 539, 582, 1397
HincII GTYRAC 1 cut(s) 1374
HindII GTYRAC 1 cut(s) 1374
HinfI GANTC 6 cut(s) 5, 37, 515, 921, 996, 1327
HpaII CCGG 2 cut(s) 405, 1377
HphI GGTGA 1 cut(s) 738
Hpy166II GTNNAC 3 cut(s) 66, 1374, 1638
Hpy188I TCNGA 6 cut(s) 55, 119, 859, 1148, 1240, 1501
Hpy188III TCNNGA 4 cut(s) 199, 500, 544, 1331
Hpy8I GTNNAC 3 cut(s) 66, 1374, 1638
HpyAV CCTTC 6 cut(s) 120, 685, 1093, 1111, 1641, 1657
HpyCH4III ACNGT 1 cut(s) 1308
HpyCH4IV ACGT 1 cut(s) 1568
HpyCH4V TGCA 7 cut(s) 90, 185, 261, 386, 687, 1015, 1538
HpyF10VI GCNNNNNNNGC 7 cut(s) 87, 383, 392, 476, 657, 1073, 1561
HpyF3I CTNAG 7 cut(s) 54, 188, 308, 378, 600, 1068, 1237
HpySE526I ACGT 1 cut(s) 1568
Hsp92II CATG 9 cut(s) 97, 214, 265, 370, 493, 503, 539, 582, 1397
Kzo9I GATC 3 cut(s) 444, 507, 1521
LguI GCTCTTC 1 cut(s) 146
LmnI GCTCC 1 cut(s) 1056
Lsp1109I GCAGC 5 cut(s) 291, 328, 882, 1349, 1522
LweI GCATC 1 cut(s) 996
MabI ACCWGGT 1 cut(s) 748
MaeI CTAG 1 cut(s) 986
MaeII ACGT 1 cut(s) 1568
MaeIII GTNAC 4 cut(s) 485, 1310, 1346, 1416
MalI GATC 3 cut(s) 446, 509, 1523
MboI GATC 3 cut(s) 444, 507, 1521
MflI RGATCY 1 cut(s) 1521
MhlI GDGCHC 4 cut(s) 481, 1259, 1306, 1363
MluCI AATT 6 cut(s) 233, 249, 695, 756, 811, 869
MlyI GAGTC 2 cut(s) 31, 524
MmeI TCCRAC 1 cut(s) 1227
Mph1103I ATGCAT 1 cut(s) 263
MroXI GAANNNNTTC 1 cut(s) 695
MseI TTAA 4 cut(s) 135, 872, 1127, 1262
MslI CAYNNNNRTG 3 cut(s) 209, 1004, 1571
MspI CCGG 2 cut(s) 405, 1377
MspR9I CCNGG 1 cut(s) 750
Mva1269I GAATGC 1 cut(s) 263
MvaI CCWGG 1 cut(s) 750
MwoI GCNNNNNNNGC 7 cut(s) 87, 383, 392, 476, 657, 1073, 1561
NdeII GATC 3 cut(s) 444, 507, 1521
NlaIII CATG 9 cut(s) 97, 214, 265, 370, 493, 503, 539, 582, 1397
NlaIV GGNNCC 2 cut(s) 632, 1523
NmuCI GTSAC 3 cut(s) 485, 1346, 1416
NsiI ATGCAT 1 cut(s) 263
NspI RCATGY 1 cut(s) 582
NspV TTCGAA 1 cut(s) 255
PagI TCATGA 1 cut(s) 499
PciI ACATGT 1 cut(s) 578
PciSI GCTCTTC 1 cut(s) 146
PctI GAATGC 1 cut(s) 263
PdmI GAANNNNTTC 1 cut(s) 695
PfeI GAWTC 4 cut(s) 5, 921, 996, 1327
PflMI CCANNNNNTGG 1 cut(s) 245
PinAI ACCGGT 1 cut(s) 1376
PkrI GCNGC 6 cut(s) 306, 343, 897, 1339, 1384, 1537
PleI GAGTC 2 cut(s) 31, 523
PmaCI CACGTG 1 cut(s) 1569
PmlI CACGTG 1 cut(s) 1569
PpsI GAGTC 2 cut(s) 31, 523
Ppu21I YACGTR 1 cut(s) 1569
PscI ACATGT 1 cut(s) 578
PshBI ATTAAT 1 cut(s) 872
Psp124BI GAGCTC 2 cut(s) 481, 1363
Psp6I CCWGG 1 cut(s) 748
PspCI CACGTG 1 cut(s) 1569
PspGI CCWGG 1 cut(s) 748
PspN4I GGNNCC 2 cut(s) 632, 1523
PspPI GGNCC 2 cut(s) 630, 1563
PsuI RGATCY 1 cut(s) 1521
RsaI GTAC 2 cut(s) 67, 1529
RsaNI GTAC 2 cut(s) 66, 1528
RseI CAYNNNNRTG 3 cut(s) 209, 1004, 1571
SacI GAGCTC 2 cut(s) 481, 1363
SapI GCTCTTC 1 cut(s) 146
SaqAI TTAA 4 cut(s) 135, 872, 1127, 1262
SatI GCNGC 6 cut(s) 305, 342, 896, 1338, 1383, 1536
Sau3AI GATC 3 cut(s) 444, 507, 1521
Sau96I GGNCC 2 cut(s) 630, 1563
SchI GAGTC 2 cut(s) 31, 524
ScrFI CCNGG 1 cut(s) 750
SduI GDGCHC 4 cut(s) 481, 1259, 1306, 1363
SexAI ACCWGGT 1 cut(s) 748
SfaNI GCATC 1 cut(s) 996
SfuI TTCGAA 1 cut(s) 255
SinI GGWCC 1 cut(s) 630
SmiMI CAYNNNNRTG 3 cut(s) 209, 1004, 1571
SmlI CTYRAG 2 cut(s) 847, 1045
SmoI CTYRAG 2 cut(s) 847, 1045
Sse9I AATT 6 cut(s) 233, 249, 695, 756, 811, 869
SsiI CCGC 1 cut(s) 1382
SspI AATATT 1 cut(s) 1213
SspMI CTAG 1 cut(s) 986
SstI GAGCTC 2 cut(s) 481, 1363
StyD4I CCNGG 1 cut(s) 748
TaaI ACNGT 1 cut(s) 1308
TaiI ACGT 1 cut(s) 1571
TaqI TCGA 4 cut(s) 255, 475, 552, 957
TasI AATT 6 cut(s) 233, 249, 695, 756, 811, 869
TatI WGTACW 1 cut(s) 65
TauI GCSGC 1 cut(s) 1385
TfiI GAWTC 4 cut(s) 5, 921, 996, 1327
Tru1I TTAA 4 cut(s) 135, 872, 1127, 1262
Tru9I TTAA 4 cut(s) 135, 872, 1127, 1262
TscAI CASTG 3 cut(s) 629, 1313, 1645
TseFI GTSAC 3 cut(s) 485, 1346, 1416
TseI GCWGC 5 cut(s) 304, 341, 895, 1337, 1535
Tsp45I GTSAC 3 cut(s) 485, 1346, 1416
TspRI CASTG 3 cut(s) 629, 1313, 1645
Van91I CCANNNNNTGG 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 630
VspI ATTAAT 1 cut(s) 872
XagI CCTNNNNNAGG 1 cut(s) 1605
XapI RAATTY 4 cut(s) 233, 249, 695, 811
XceI RCATGY 1 cut(s) 582
XmnI GAANNNNTTC 1 cut(s) 695
XspI CTAG 1 cut(s) 986
Zsp2I ATGCAT 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.