RchiOBHm_Chr2g0110991

Histone H2A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0019877
Physical Location & Seq
Reverse (-)
22640707 .. 22641152
446 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 222 bp
ATGGGTGTTCCAGAGGGATCTGAAGTGCAAGCCGGAGGAAGGAAGGGTGATGGCCCCAAGAAGAAGGCGGTGACTCGCTCCGTCAAAGCCGGCCTACAATTTCCGGTCGGTAGGATTGGCCGCTACTTTAAGAAGGGAAGGTATGCACAGCATGTCGGCTTCGGTCTACTTGGTCGCGTGCTTGAGTACCTCGCAGCTGAAATTGTGTTGGAGTTGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04217 ko05034 ko05322 map04217 map05034 map05322
Pfam Domains
Protein Families
Histone Histone_H2A_C

Protein Analysis

73

Amino Acids

7.83

Weight (kDa)

10.16

Isoelectric Point (pI)

28.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019877)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0110991 RchiOBHm_Chr3g0463731
rosa_multiflora Rmu_sc0002106.1_g000011
rosa_roxburghii Rroxscaffold_3G00255050
rosa_samantha Rh2CG225700 Rh6CG174200 Rh7BG157000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 166
AccII CGCG 1 cut(s) 177
AciI CCGC 2 cut(s) 68, 121
AclWI GGATC 1 cut(s) 25
AcoI YGGCCR 1 cut(s) 118
AcuI CTGAAG 1 cut(s) 42
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 39
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
AlwI GGATC 1 cut(s) 25
AoxI GGCC 3 cut(s) 52, 91, 118
ApeKI GCWGC 1 cut(s) 194
AspS9I GGNCC 1 cut(s) 53
AsuHPI GGTGA 2 cut(s) 59, 82
BbvI GCAGC 1 cut(s) 206
BccI CCATC 1 cut(s) 44
BisI GCNGC 2 cut(s) 121, 195
BlsI GCNGC 2 cut(s) 122, 196
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 55
BpuEI CTTGAG 1 cut(s) 203
BsaWI WCCGGW 1 cut(s) 103
Bsc4I CCNNNNNNNGG 1 cut(s) 39
Bse118I RCCGGY 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 39
BseXI GCAGC 1 cut(s) 206
Bsh1236I CGCG 1 cut(s) 177
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 3 cut(s) 54, 93, 120
BsiEI CGRYCG 1 cut(s) 108
BsiSI CCGG 3 cut(s) 33, 90, 104
BslI CCNNNNNNNGG 1 cut(s) 39
BsnI GGCC 3 cut(s) 54, 93, 120
Bsp143I GATC 1 cut(s) 17
BspACI CCGC 2 cut(s) 68, 121
BspANI GGCC 3 cut(s) 54, 93, 120
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 1 cut(s) 55
BspPI GGATC 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 89
BssAI RCCGGY 1 cut(s) 89
BssMI GATC 1 cut(s) 17
BstC8I GCNNGC 3 cut(s) 30, 91, 179
BstFNI CGCG 1 cut(s) 177
BstKTI GATC 1 cut(s) 20
BstMBI GATC 1 cut(s) 17
BstMCI CGRYCG 1 cut(s) 108
BstNSI RCATGY 1 cut(s) 155
BstUI CGCG 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 206
BstX2I RGATCY 1 cut(s) 17
BstYI RGATCY 1 cut(s) 17
BsuRI GGCC 3 cut(s) 54, 93, 120
Cac8I GCNNGC 3 cut(s) 30, 91, 179
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 1 cut(s) 53
Csp6I GTAC 1 cut(s) 187
CviAII CATG 1 cut(s) 152
CviJI RGCY 7 cut(s) 32, 54, 89, 93, 120, 159, 197
CviKI_1 RGCY 7 cut(s) 32, 54, 89, 93, 120, 159, 197
CviQI GTAC 1 cut(s) 187
DpnI GATC 1 cut(s) 19
DpnII GATC 1 cut(s) 17
EaeI YGGCCR 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 42
FaeI CATG 1 cut(s) 155
FaiI YATR 2 cut(s) 144, 153
FatI CATG 1 cut(s) 151
FblI GTMKAC 1 cut(s) 166
Fnu4HI GCNGC 2 cut(s) 121, 195
Fsp4HI GCNGC 2 cut(s) 121, 195
GluI GCNGC 2 cut(s) 121, 195
HaeIII GGCC 3 cut(s) 54, 93, 120
HapII CCGG 3 cut(s) 33, 90, 104
Hin1II CATG 1 cut(s) 155
HinfI GANTC 1 cut(s) 73
HpaII CCGG 3 cut(s) 33, 90, 104
HphI GGTGA 2 cut(s) 59, 82
Hpy166II GTNNAC 1 cut(s) 167
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 2 cut(s) 11, 219
Hpy8I GTNNAC 1 cut(s) 167
HpyAV CCTTC 5 cut(s) 33, 37, 58, 127, 132
HpyCH4V TGCA 2 cut(s) 28, 146
Hsp92II CATG 1 cut(s) 155
KroI GCCGGC 1 cut(s) 89
KroNI GCCGGC 1 cut(s) 91
Kzo9I GATC 1 cut(s) 17
LmnI GCTCC 1 cut(s) 83
LpnPI CCDG 4 cut(s) 24, 46, 103, 117
Lsp1109I GCAGC 1 cut(s) 206
MaeIII GTNAC 1 cut(s) 70
MalI GATC 1 cut(s) 19
MboI GATC 1 cut(s) 17
MboII GAAGA 1 cut(s) 73
MflI RGATCY 1 cut(s) 17
MluCI AATT 2 cut(s) 98, 201
MlyI GAGTC 1 cut(s) 67
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 3 cut(s) 7, 29, 200
MroNI GCCGGC 1 cut(s) 89
MseI TTAA 1 cut(s) 129
MspA1I CMGCKG 1 cut(s) 197
MspI CCGG 3 cut(s) 33, 90, 104
MvnI CGCG 1 cut(s) 177
NaeI GCCGGC 1 cut(s) 91
NdeII GATC 1 cut(s) 17
NgoMIV GCCGGC 1 cut(s) 89
NlaIII CATG 1 cut(s) 155
NlaIV GGNNCC 1 cut(s) 55
NmuCI GTSAC 1 cut(s) 70
NspI RCATGY 1 cut(s) 155
PdiI GCCGGC 1 cut(s) 91
PkrI GCNGC 2 cut(s) 122, 196
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 1 cut(s) 53
PsuI RGATCY 1 cut(s) 17
PvuII CAGCTG 1 cut(s) 197
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 2 cut(s) 121, 195
Sau3AI GATC 1 cut(s) 17
Sau96I GGNCC 1 cut(s) 53
SchI GAGTC 1 cut(s) 67
SetI ASST 3 cut(s) 143, 192, 199
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 2 cut(s) 98, 201
SsiI CCGC 2 cut(s) 68, 121
TaqII GACCGA 1 cut(s) 152
TasI AATT 2 cut(s) 98, 201
TauI GCSGC 1 cut(s) 123
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 1 cut(s) 194
Tsp45I GTSAC 1 cut(s) 70
TspGWI ACGGA 1 cut(s) 70
XceI RCATGY 1 cut(s) 155
XmiI GTMKAC 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.