RchiOBHm_Chr3g0463731

Histone H2A

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
11053430 .. 11053651
222 bp
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UTR
Exon/CDS
Intron
PRQ43003

Sequence Viewer

Length: 150 bp
ATGGGTGTTCCAGAGGGGTCTAAAGTGCAAGCAGGAGGAAGGAAGGCCGATGGCCCCAAGAAGAAGGAGGTGACTCGCTCCATCAAAGCCGGTTTGCAATTTCCGGTCGGTAGGATTGGCCGCTACTTGAAGAAGGGAAGGTATGCTTGA

Protein Analysis

49

Amino Acids

5.27

Weight (kDa)

10.82

Isoelectric Point (pI)

31.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019877)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 121
AcoI YGGCCR 1 cut(s) 118
AgsI TTSAA 1 cut(s) 130
AoxI GGCC 3 cut(s) 45, 52, 118
AspS9I GGNCC 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 82
BccI CCATC 2 cut(s) 44, 89
BisI GCNGC 1 cut(s) 121
BlsI GCNGC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 55
BsaWI WCCGGW 1 cut(s) 103
Bse118I RCCGGY 1 cut(s) 89
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 3 cut(s) 47, 54, 120
BsiEI CGRYCG 1 cut(s) 108
BsiSI CCGG 2 cut(s) 90, 104
BsnI GGCC 3 cut(s) 47, 54, 120
BspACI CCGC 1 cut(s) 121
BspANI GGCC 3 cut(s) 47, 54, 120
BspLI GGNNCC 1 cut(s) 55
BsrFI RCCGGY 1 cut(s) 89
BssAI RCCGGY 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 30
BstMCI CGRYCG 1 cut(s) 108
BsuRI GGCC 3 cut(s) 47, 54, 120
Cac8I GCNNGC 1 cut(s) 30
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 1 cut(s) 53
CviJI RGCY 4 cut(s) 47, 54, 89, 120
CviKI_1 RGCY 4 cut(s) 47, 54, 89, 120
EaeI YGGCCR 1 cut(s) 118
FaiI YATR 1 cut(s) 144
FalI AAGNNNNNCTT 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 121
GluI GCNGC 1 cut(s) 121
HaeIII GGCC 3 cut(s) 47, 54, 120
HapII CCGG 2 cut(s) 90, 104
HinfI GANTC 1 cut(s) 73
HpaII CCGG 2 cut(s) 90, 104
HphI GGTGA 1 cut(s) 82
Hpy188III TCNNGA 1 cut(s) 11
HpyAV CCTTC 5 cut(s) 33, 37, 58, 127, 132
HpyCH4V TGCA 2 cut(s) 28, 97
LmnI GCTCC 1 cut(s) 83
LpnPI CCDG 4 cut(s) 18, 24, 103, 117
MaeIII GTNAC 1 cut(s) 70
MboII GAAGA 2 cut(s) 73, 142
MluCI AATT 1 cut(s) 98
MlyI GAGTC 1 cut(s) 67
MnlI CCTC 3 cut(s) 7, 29, 61
MspI CCGG 2 cut(s) 90, 104
NlaIV GGNNCC 1 cut(s) 55
NmuCI GTSAC 1 cut(s) 70
PkrI GCNGC 1 cut(s) 122
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 1 cut(s) 53
SatI GCNGC 1 cut(s) 121
Sau96I GGNCC 1 cut(s) 53
SchI GAGTC 1 cut(s) 67
SetI ASST 2 cut(s) 72, 143
SgeI CNNG 8 cut(s) 23, 41, 45, 70, 87, 102, 116, 139
Sse9I AATT 1 cut(s) 98
SsiI CCGC 1 cut(s) 121
TasI AATT 1 cut(s) 98
TauI GCSGC 1 cut(s) 123
TseFI GTSAC 1 cut(s) 70
Tsp45I GTSAC 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.