Rh6CG174200

Histone H2A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0019877
Physical Location & Seq
Reverse (-)
24621247 .. 24621868
622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG174200.1

Sequence Viewer

Length: 240 bp
ATGAGATCTATGGGTGTTCCAGAGGGATCTGAAGTGCAAGCCGGAGGAAGGAAGGGTGATGGTCCCAAGAAGAAGGCGGTGACTCGCTCCGTCAAAGCCGGTCTACAATTTCCGGTAGGTAGGATTGGCCGCTACTTGAAGAAGGGAAGTTTAGGTGCTGGAGTTGTTTGGAAATGCAGCTCAGGGCAACAAGAAGAACATGATTATCCCAAGGCATCTGTTATTGGCTGTGAGGAATGA

Protein Analysis

79

Amino Acids

8.35

Weight (kDa)

9.64

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019877)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0110991 RchiOBHm_Chr3g0463731
rosa_multiflora Rmu_sc0002106.1_g000011
rosa_roxburghii Rroxscaffold_3G00255050
rosa_samantha Rh2CG225700 Rh6CG174200 Rh7BG157000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 103
AciI CCGC 2 cut(s) 77, 130
AclWI GGATC 1 cut(s) 34
AcoI YGGCCR 1 cut(s) 127
AcuI CTGAAG 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 48
AgsI TTSAA 1 cut(s) 139
AluBI AGCT 1 cut(s) 180
AluI AGCT 1 cut(s) 180
AlwI GGATC 1 cut(s) 34
AoxI GGCC 1 cut(s) 127
ApeKI GCWGC 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 2 cut(s) 68, 91
AvaII GGWCC 1 cut(s) 62
BbvI GCAGC 1 cut(s) 189
BccI CCATC 1 cut(s) 53
BglII AGATCT 1 cut(s) 5
BisI GCNGC 2 cut(s) 130, 178
BlsI GCNGC 2 cut(s) 131, 179
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 64
BmsI GCATC 1 cut(s) 224
BpmI CTGGAG 1 cut(s) 180
Bpu10I CCTNAGC 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 112
Bsc4I CCNNNNNNNGG 1 cut(s) 48
Bse118I RCCGGY 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 210
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 195
BseXI GCAGC 1 cut(s) 189
BshFI GGCC 1 cut(s) 129
BsiSI CCGG 3 cut(s) 42, 99, 113
BslFI GGGAC 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 48
BsmFI GGGAC 1 cut(s) 48
BsnI GGCC 1 cut(s) 129
Bsp143I GATC 2 cut(s) 5, 26
BspACI CCGC 2 cut(s) 77, 130
BspANI GGCC 1 cut(s) 129
BspCNI CTCAG 1 cut(s) 194
BspLI GGNNCC 1 cut(s) 64
BspPI GGATC 1 cut(s) 34
BsrFI RCCGGY 1 cut(s) 98
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 2 cut(s) 5, 26
BssT1I CCWWGG 1 cut(s) 210
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 181
BstKTI GATC 2 cut(s) 8, 29
BstMBI GATC 2 cut(s) 5, 26
BstV1I GCAGC 1 cut(s) 189
BstX2I RGATCY 2 cut(s) 5, 26
BstYI RGATCY 2 cut(s) 5, 26
BsuRI GGCC 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 39
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 62
CviAII CATG 1 cut(s) 200
CviJI RGCY 5 cut(s) 41, 98, 129, 180, 228
CviKI_1 RGCY 5 cut(s) 41, 98, 129, 180, 228
DdeI CTNAG 1 cut(s) 181
DpnI GATC 2 cut(s) 7, 28
DpnII GATC 2 cut(s) 5, 26
EaeI YGGCCR 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 210
Eco47I GGWCC 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 1 cut(s) 203
FaiI YATR 2 cut(s) 11, 201
FaqI GGGAC 1 cut(s) 48
FatI CATG 1 cut(s) 199
FblI GTMKAC 1 cut(s) 103
Fnu4HI GCNGC 2 cut(s) 130, 178
Fsp4HI GCNGC 2 cut(s) 130, 178
GluI GCNGC 2 cut(s) 130, 178
GsuI CTGGAG 1 cut(s) 180
HaeIII GGCC 1 cut(s) 129
HapII CCGG 3 cut(s) 42, 99, 113
Hin1II CATG 1 cut(s) 203
HinfI GANTC 1 cut(s) 82
HpaII CCGG 3 cut(s) 42, 99, 113
HphI GGTGA 2 cut(s) 68, 91
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 1 cut(s) 104
HpyAV CCTTC 4 cut(s) 42, 46, 67, 136
HpyCH4V TGCA 2 cut(s) 37, 177
HpyF3I CTNAG 1 cut(s) 181
Hsp92II CATG 1 cut(s) 203
Kzo9I GATC 2 cut(s) 5, 26
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 6 cut(s) 33, 55, 112, 126, 144, 168
Lsp1109I GCAGC 1 cut(s) 189
LweI GCATC 1 cut(s) 224
MaeIII GTNAC 1 cut(s) 79
MalI GATC 2 cut(s) 7, 28
MboI GATC 2 cut(s) 5, 26
MboII GAAGA 3 cut(s) 82, 151, 206
MflI RGATCY 2 cut(s) 5, 26
MluCI AATT 1 cut(s) 107
MlyI GAGTC 1 cut(s) 76
MnlI CCTC 3 cut(s) 16, 38, 226
MspI CCGG 3 cut(s) 42, 99, 113
NdeII GATC 2 cut(s) 5, 26
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 1 cut(s) 64
NmuCI GTSAC 1 cut(s) 79
PkrI GCNGC 2 cut(s) 131, 179
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 1 cut(s) 62
PsuI RGATCY 2 cut(s) 5, 26
SatI GCNGC 2 cut(s) 130, 178
Sau3AI GATC 2 cut(s) 5, 26
Sau96I GGNCC 1 cut(s) 62
SchI GAGTC 1 cut(s) 76
SetI ASST 3 cut(s) 121, 157, 182
SfaNI GCATC 1 cut(s) 224
SinI GGWCC 1 cut(s) 62
Sse9I AATT 1 cut(s) 107
SsiI CCGC 2 cut(s) 77, 130
StyI CCWWGG 1 cut(s) 210
TasI AATT 1 cut(s) 107
TauI GCSGC 1 cut(s) 132
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 1 cut(s) 177
Tsp45I GTSAC 1 cut(s) 79
TspGWI ACGGA 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 62
XmiI GTMKAC 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.