Rroxscaffold_3G00255050

reference M ller, K., Lindauer, A., Br derlein, M. and Schmitt, R. (1990) Gene 93 167-175 PMID 2227431

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0019877
Physical Location & Seq
Forward (+)
49327519 .. 49329101
1583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00255050.1

Sequence Viewer

Length: 372 bp
ATGCAGTGGACCATTAGACAAGATTCTCTACCATATCTGACGCACCAGAACAGATTGAAGCCTGAAGCAATTCTGCACTCTGCTCACAAGCATGCCAATGCCATCCTTATGCTACAAGCCAAGACAAATCTGGAGCAAACACATCAAGACAAAAATCTTATCTCCCACGTGCTGGAGTTGTCTGGAAATGCATCTCGGGGCAACAAGAAGAACAAGATTATCCCAAGGCATCTGTTATTGGCTGTGAGGAATGACGAAGAGCTTGGCTTCTTTCTGGGGTTACTATTGGTCATGGAGTTGCGCTTCAATCAGGTTGAAATCAAGCAGCCTGAGATGATCAGTCACTACTTTGTTGCGTCTAGCGTATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04217 ko05034 ko05322 map04217 map05034 map05322
Pfam Domains
Protein Families
Histone Histone_H2A_C

Protein Analysis

123

Amino Acids

14.16

Weight (kDa)

9.4

Isoelectric Point (pI)

40.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019877)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0110991 RchiOBHm_Chr3g0463731
rosa_multiflora Rmu_sc0002106.1_g000011
rosa_roxburghii Rroxscaffold_3G00255050
rosa_samantha Rh2CG225700 Rh6CG174200 Rh7BG157000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 172
AcuI CTGAAG 1 cut(s) 84
AcvI CACGTG 1 cut(s) 169
AfiI CCNNNNNNNGG 1 cut(s) 172
AgsI TTSAA 3 cut(s) 58, 307, 317
AluBI AGCT 1 cut(s) 262
AluI AGCT 1 cut(s) 262
Ama87I CYCGRG 1 cut(s) 195
ApeKI GCWGC 1 cut(s) 325
Asp700I GAANNNNTTC 1 cut(s) 69
AspLEI GCGC 1 cut(s) 303
AspS9I GGNCC 1 cut(s) 9
AvaI CYCGRG 1 cut(s) 195
AvaII GGWCC 1 cut(s) 9
BbrPI CACGTG 1 cut(s) 169
BbvI GCAGC 1 cut(s) 337
BccI CCATC 1 cut(s) 110
BclI TGATCA 1 cut(s) 336
BfaI CTAG 1 cut(s) 360
BisI GCNGC 1 cut(s) 326
BlsI GCNGC 1 cut(s) 327
Bme18I GGWCC 1 cut(s) 9
BmeT110I CYCGRG 1 cut(s) 195
BmgT120I GGNCC 1 cut(s) 9
BmsI GCATC 2 cut(s) 200, 238
BpmI CTGGAG 2 cut(s) 152, 194
BsaAI YACGTR 1 cut(s) 169
BsaJI CCNNGG 1 cut(s) 224
Bsc4I CCNNNNNNNGG 1 cut(s) 172
BseDI CCNNGG 1 cut(s) 224
BseGI GGATG 1 cut(s) 102
BseLI CCNNNNNNNGG 1 cut(s) 172
BseMII CTCAG 1 cut(s) 321
BseXI GCAGC 1 cut(s) 337
BsgI GTGCAG 1 cut(s) 59
BsiHKCI CYCGRG 1 cut(s) 195
BslI CCNNNNNNNGG 1 cut(s) 172
BsoBI CYCGRG 1 cut(s) 195
Bsp143I GATC 1 cut(s) 336
BspCNI CTCAG 1 cut(s) 322
BspQI GCTCTTC 1 cut(s) 252
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 1 cut(s) 336
BssT1I CCWWGG 1 cut(s) 224
Bst6I CTCTTC 1 cut(s) 252
BstBAI YACGTR 1 cut(s) 169
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 1 cut(s) 330
BstF5I GGATG 1 cut(s) 102
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 1 cut(s) 339
BstMBI GATC 1 cut(s) 336
BstNSI RCATGY 1 cut(s) 95
BstV1I GCAGC 1 cut(s) 337
BtsCI GGATG 1 cut(s) 102
BtsI GCAGTG 1 cut(s) 11
BtsIMutI CAGTG 1 cut(s) 11
Cac8I GCNNGC 1 cut(s) 93
CfoI GCGC 1 cut(s) 303
Cfr13I GGNCC 1 cut(s) 9
CseI GACGC 2 cut(s) 49, 345
CviAII CATG 2 cut(s) 92, 292
CviJI RGCY 6 cut(s) 61, 119, 242, 262, 267, 328
CviKI_1 RGCY 6 cut(s) 61, 119, 242, 262, 267, 328
DdeI CTNAG 1 cut(s) 330
DpnI GATC 1 cut(s) 338
DpnII GATC 1 cut(s) 336
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Eco130I CCWWGG 1 cut(s) 224
Eco47I GGWCC 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 84
Eco72I CACGTG 1 cut(s) 169
Eco88I CYCGRG 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 224
EcoT22I ATGCAT 1 cut(s) 193
ErhI CCWWGG 1 cut(s) 224
FaeI CATG 2 cut(s) 95, 295
FaiI YATR 5 cut(s) 34, 93, 110, 293, 370
FatI CATG 2 cut(s) 91, 291
FbaI TGATCA 1 cut(s) 336
Fnu4HI GCNGC 1 cut(s) 326
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 326
FspBI CTAG 1 cut(s) 360
GlaI GCGC 1 cut(s) 302
GluI GCNGC 1 cut(s) 326
GsuI CTGGAG 2 cut(s) 152, 194
HgaI GACGC 2 cut(s) 49, 345
HhaI GCGC 1 cut(s) 303
Hin1II CATG 2 cut(s) 95, 295
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HinfI GANTC 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 1 cut(s) 39
Hpy188III TCNNGA 3 cut(s) 131, 146, 183
Hpy8I GTNNAC 1 cut(s) 9
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 3 cut(s) 4, 76, 191
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 2 cut(s) 95, 295
HspAI GCGC 1 cut(s) 301
Ksp22I TGATCA 1 cut(s) 336
Kzo9I GATC 1 cut(s) 336
LguI GCTCTTC 1 cut(s) 252
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 8 cut(s) 59, 75, 116, 158, 168, 260, 296, 342
Lsp1109I GCAGC 1 cut(s) 337
LweI GCATC 2 cut(s) 200, 238
MaeI CTAG 1 cut(s) 360
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 2 cut(s) 279, 341
MalI GATC 1 cut(s) 338
MboI GATC 1 cut(s) 336
MboII GAAGA 2 cut(s) 220, 269
MluCI AATT 1 cut(s) 69
MnlI CCTC 1 cut(s) 240
Mph1103I ATGCAT 1 cut(s) 193
MroXI GAANNNNTTC 1 cut(s) 69
MslI CAYNNNNRTG 3 cut(s) 90, 96, 107
NdeII GATC 1 cut(s) 336
NlaIII CATG 2 cut(s) 95, 295
NmuCI GTSAC 1 cut(s) 341
NsiI ATGCAT 1 cut(s) 193
NspI RCATGY 1 cut(s) 95
PaeI GCATGC 1 cut(s) 95
PciSI GCTCTTC 1 cut(s) 252
PdmI GAANNNNTTC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 23
PflMI CCANNNNNTGG 1 cut(s) 172
PkrI GCNGC 1 cut(s) 327
PmaCI CACGTG 1 cut(s) 169
PmlI CACGTG 1 cut(s) 169
Ppu21I YACGTR 1 cut(s) 169
PspCI CACGTG 1 cut(s) 169
PspPI GGNCC 1 cut(s) 9
RseI CAYNNNNRTG 3 cut(s) 90, 96, 107
SapI GCTCTTC 1 cut(s) 252
SatI GCNGC 1 cut(s) 326
Sau3AI GATC 1 cut(s) 336
Sau96I GGNCC 1 cut(s) 9
SetI ASST 3 cut(s) 171, 264, 315
SfaNI GCATC 2 cut(s) 200, 238
SinI GGWCC 1 cut(s) 9
SmiMI CAYNNNNRTG 3 cut(s) 90, 96, 107
SphI GCATGC 1 cut(s) 95
Sse9I AATT 1 cut(s) 69
SspMI CTAG 1 cut(s) 360
StyI CCWWGG 1 cut(s) 224
TaiI ACGT 1 cut(s) 171
TasI AATT 1 cut(s) 69
TfiI GAWTC 1 cut(s) 23
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 1 cut(s) 325
Tsp45I GTSAC 1 cut(s) 341
Van91I CCANNNNNTGG 1 cut(s) 172
VpaK11BI GGWCC 1 cut(s) 9
XceI RCATGY 1 cut(s) 95
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 1 cut(s) 360
Zsp2I ATGCAT 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.