Rh2CG225700

Histone H2A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0019877
Physical Location & Seq
Reverse (-)
22885447 .. 22888554
3108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG225700.1

Sequence Viewer

Length: 282 bp
ATGAGGGGGAAGCGAGAGAGGAAGAAGACGAGTTTTAAAATGGCATATCTTTGGGAGGTTCCAGAGGGATCTGAAGTGCAAGCCGGAGGAAGGAAGGGTGATGGCCCCAAGAAGAAGGCGGTGACTCGCTCCGTCAAAGCCGGCCTACAATTTCCGGTCGGTAGGATTGGCCGCTACTTTAAGAAGGGAAGTTCAGGTGTTGGAGTTGTCTTGAAATGCAGCTCGGGGCAACAAGAAGAACATGATTATCCCAAGGCATCTGTTATTGGCTGTGAGGAATGA

Protein Analysis

93

Amino Acids

10.18

Weight (kDa)

9.91

Isoelectric Point (pI)

43.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019877)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0110991 RchiOBHm_Chr3g0463731
rosa_multiflora Rmu_sc0002106.1_g000011
rosa_roxburghii Rroxscaffold_3G00255050
rosa_samantha Rh2CG225700 Rh6CG174200 Rh7BG157000

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 119, 172
AclWI GGATC 1 cut(s) 76
AcoI YGGCCR 1 cut(s) 169
AcuI CTGAAG 1 cut(s) 93
AfiI CCNNNNNNNGG 1 cut(s) 90
AgsI TTSAA 1 cut(s) 214
AluBI AGCT 1 cut(s) 222
AluI AGCT 1 cut(s) 222
AlwI GGATC 1 cut(s) 76
Ama87I CYCGRG 1 cut(s) 223
AoxI GGCC 3 cut(s) 103, 142, 169
ApeKI GCWGC 1 cut(s) 219
AspS9I GGNCC 1 cut(s) 104
AsuHPI GGTGA 2 cut(s) 110, 133
AvaI CYCGRG 1 cut(s) 223
BbsI GAAGAC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 231
BccI CCATC 1 cut(s) 95
BisI GCNGC 2 cut(s) 172, 220
BlsI GCNGC 2 cut(s) 173, 221
BmeT110I CYCGRG 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 104
BmiI GGNNCC 2 cut(s) 60, 106
BmsI GCATC 1 cut(s) 266
BpiI GAAGAC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 252
BsaWI WCCGGW 1 cut(s) 154
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse118I RCCGGY 1 cut(s) 140
BseDI CCNNGG 1 cut(s) 252
BseLI CCNNNNNNNGG 1 cut(s) 90
BseXI GCAGC 1 cut(s) 231
Bsh1285I CGRYCG 1 cut(s) 159
BshFI GGCC 3 cut(s) 105, 144, 171
BsiEI CGRYCG 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 223
BsiSI CCGG 3 cut(s) 84, 141, 155
BslI CCNNNNNNNGG 1 cut(s) 90
BsnI GGCC 3 cut(s) 105, 144, 171
BsoBI CYCGRG 1 cut(s) 223
Bsp143I GATC 1 cut(s) 68
BspACI CCGC 2 cut(s) 119, 172
BspANI GGCC 3 cut(s) 105, 144, 171
BspLI GGNNCC 2 cut(s) 60, 106
BspPI GGATC 1 cut(s) 76
BsrFI RCCGGY 1 cut(s) 140
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 1 cut(s) 68
BssT1I CCWWGG 1 cut(s) 252
BstC8I GCNNGC 2 cut(s) 81, 142
BstKTI GATC 1 cut(s) 71
BstMBI GATC 1 cut(s) 68
BstMCI CGRYCG 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 231
BstV2I GAAGAC 1 cut(s) 32
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BsuRI GGCC 3 cut(s) 105, 144, 171
Cac8I GCNNGC 2 cut(s) 81, 142
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 104
CviAII CATG 1 cut(s) 242
CviJI RGCY 7 cut(s) 83, 105, 140, 144, 171, 222, 270
CviKI_1 RGCY 7 cut(s) 83, 105, 140, 144, 171, 222, 270
DpnI GATC 1 cut(s) 70
DpnII GATC 1 cut(s) 68
DraI TTTAAA 1 cut(s) 37
EaeI YGGCCR 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 252
Eco57I CTGAAG 1 cut(s) 93
Eco88I CYCGRG 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 1 cut(s) 245
FaiI YATR 2 cut(s) 46, 243
FatI CATG 1 cut(s) 241
Fnu4HI GCNGC 2 cut(s) 172, 220
Fsp4HI GCNGC 2 cut(s) 172, 220
GluI GCNGC 2 cut(s) 172, 220
HaeIII GGCC 3 cut(s) 105, 144, 171
HapII CCGG 3 cut(s) 84, 141, 155
Hin1II CATG 1 cut(s) 245
HinfI GANTC 1 cut(s) 124
HpaII CCGG 3 cut(s) 84, 141, 155
HphI GGTGA 2 cut(s) 110, 133
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 2 cut(s) 62, 211
HpyAV CCTTC 4 cut(s) 84, 88, 109, 178
HpyCH4V TGCA 2 cut(s) 79, 219
Hsp92II CATG 1 cut(s) 245
KroI GCCGGC 1 cut(s) 140
KroNI GCCGGC 1 cut(s) 142
Kzo9I GATC 1 cut(s) 68
LmnI GCTCC 1 cut(s) 134
LpnPI CCDG 5 cut(s) 75, 97, 154, 168, 180
Lsp1109I GCAGC 1 cut(s) 231
LweI GCATC 1 cut(s) 266
MaeIII GTNAC 1 cut(s) 121
MalI GATC 1 cut(s) 70
MboI GATC 1 cut(s) 68
MboII GAAGA 4 cut(s) 34, 37, 124, 248
MflI RGATCY 1 cut(s) 68
MluCI AATT 1 cut(s) 149
MlyI GAGTC 1 cut(s) 118
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 5 cut(s) 12, 49, 58, 80, 268
MroNI GCCGGC 1 cut(s) 140
MseI TTAA 2 cut(s) 36, 180
MspI CCGG 3 cut(s) 84, 141, 155
NaeI GCCGGC 1 cut(s) 142
NdeII GATC 1 cut(s) 68
NgoMIV GCCGGC 1 cut(s) 140
NlaIII CATG 1 cut(s) 245
NlaIV GGNNCC 2 cut(s) 60, 106
NmuCI GTSAC 1 cut(s) 121
PdiI GCCGGC 1 cut(s) 142
PkrI GCNGC 2 cut(s) 173, 221
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PspN4I GGNNCC 2 cut(s) 60, 106
PspPI GGNCC 1 cut(s) 104
PsuI RGATCY 1 cut(s) 68
SaqAI TTAA 2 cut(s) 36, 180
SatI GCNGC 2 cut(s) 172, 220
Sau3AI GATC 1 cut(s) 68
Sau96I GGNCC 1 cut(s) 104
SchI GAGTC 1 cut(s) 118
SetI ASST 3 cut(s) 60, 199, 224
SfaNI GCATC 1 cut(s) 266
Sse9I AATT 1 cut(s) 149
SsiI CCGC 2 cut(s) 119, 172
StyI CCWWGG 1 cut(s) 252
TasI AATT 1 cut(s) 149
TauI GCSGC 1 cut(s) 174
Tru1I TTAA 2 cut(s) 36, 180
Tru9I TTAA 2 cut(s) 36, 180
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 1 cut(s) 219
Tsp45I GTSAC 1 cut(s) 121
TspGWI ACGGA 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.