RchiOBHm_Chr2g0122161

Tropinone reductase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0019369
Physical Location & Seq
Reverse (-)
35065582 .. 35065839
258 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 258 bp
ATGGCAGAGACCAGTGGCAACCTCGCAAATCCGAGATGGTCCCTCAGGGGAACCACTGCCCTCGTCGCCGGCGACACTCATGGAATTGGGTACGCCGCAGTGGAGGAGCTAGCTACGCTCGGTGTGTTTGTGTTCACCTGTTCTTGGAACTTGGCAGAACTTGCAGAAAGGTGTCTTAAGGAATGGTCGGCTAAGGAGTTCTGTGTCACTGGGGTTGTCTTCGATGTTTTGATTAAATTTGATAAAGAGAGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

85

Amino Acids

9.33

Weight (kDa)

5.0

Isoelectric Point (pI)

18.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 19 - 76 2.2e-06 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019369)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0122161 RchiOBHm_Chr4g0423501 RchiOBHm_Chr7g0223341
rosa_multiflora Rmu_sc0000805.1_g000031 Rmu_sc0002764.1_g000024
rosa_roxburghii Rroxscaffold_3G00224030
rosa_samantha Rh2AG252300 Rh2DG260500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 96
AcsI RAATTY 1 cut(s) 236
AfaI GTAC 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 144
AflII CTTAAG 1 cut(s) 176
AluBI AGCT 2 cut(s) 109, 113
AluI AGCT 2 cut(s) 109, 113
Alw26I GTCTC 1 cut(s) 2
ApoI RAATTY 1 cut(s) 236
AspS9I GGNCC 1 cut(s) 39
AsuHPI GGTGA 1 cut(s) 127
AsuNHI GCTAGC 1 cut(s) 109
AvaII GGWCC 1 cut(s) 39
AxyI CCTNAGG 1 cut(s) 44
BbsI GAAGAC 1 cut(s) 211
BccI CCATC 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 2
BfaI CTAG 1 cut(s) 110
BfrI CTTAAG 1 cut(s) 176
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 39
BmiI GGNNCC 2 cut(s) 41, 52
BmrI ACTGGG 1 cut(s) 219
BmtI GCTAGC 1 cut(s) 113
BmuI ACTGGG 1 cut(s) 219
BpiI GAAGAC 1 cut(s) 211
Bpu10I CCTNAGC 1 cut(s) 192
BsaI GGTCTC 1 cut(s) 2
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 2 cut(s) 12, 214
Bse21I CCTNAGG 1 cut(s) 44
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 58
BseNI ACTGG 2 cut(s) 12, 214
BseRI GAGGAG 1 cut(s) 119
BsiSI CCGG 1 cut(s) 69
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 1 cut(s) 144
BsmAI GTCTC 1 cut(s) 2
BsmFI GGGAC 1 cut(s) 25
Bso31I GGTCTC 1 cut(s) 2
BspACI CCGC 1 cut(s) 96
BspCNI CTCAG 1 cut(s) 57
BspLI GGNNCC 2 cut(s) 41, 52
BspOI GCTAGC 1 cut(s) 113
BspTI CTTAAG 1 cut(s) 176
BspTNI GGTCTC 1 cut(s) 2
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 2 cut(s) 12, 214
BssAI RCCGGY 1 cut(s) 68
BstAFI CTTAAG 1 cut(s) 176
BstAPI GCANNNNNTGC 1 cut(s) 161
BstC8I GCNNGC 2 cut(s) 70, 111
BstDEI CTNAG 2 cut(s) 44, 192
BstMAI GTCTC 1 cut(s) 2
BstMWI GCNNNNNNNGC 3 cut(s) 65, 115, 161
BstV2I GAAGAC 1 cut(s) 211
Bsu36I CCTNAGG 1 cut(s) 44
BtsI GCAGTG 2 cut(s) 54, 105
BtsIMutI CAGTG 4 cut(s) 19, 54, 105, 207
Cac8I GCNNGC 2 cut(s) 70, 111
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 39
Csp6I GTAC 1 cut(s) 91
CviAII CATG 1 cut(s) 80
CviJI RGCY 3 cut(s) 109, 113, 191
CviKI_1 RGCY 3 cut(s) 109, 113, 191
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 2 cut(s) 44, 192
Eco31I GGTCTC 1 cut(s) 2
Eco47I GGWCC 1 cut(s) 39
Eco81I CCTNAGG 1 cut(s) 44
FaeI CATG 1 cut(s) 83
FaiI YATR 1 cut(s) 81
FaqI GGGAC 1 cut(s) 25
FatI CATG 1 cut(s) 79
Fnu4HI GCNGC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 110
GluI GCNGC 1 cut(s) 96
HapII CCGG 1 cut(s) 69
Hin1II CATG 1 cut(s) 83
HpaII CCGG 1 cut(s) 69
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 1 cut(s) 135
Hpy188I TCNGA 1 cut(s) 33
Hpy8I GTNNAC 1 cut(s) 135
Hpy99I CGWCG 1 cut(s) 68
HpyCH4V TGCA 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 115, 161
HpyF3I CTNAG 2 cut(s) 44, 192
Hsp92II CATG 1 cut(s) 83
KroI GCCGGC 1 cut(s) 68
KroNI GCCGGC 1 cut(s) 70
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 5 cut(s) 25, 31, 82, 151, 195
MaeI CTAG 1 cut(s) 110
MaeIII GTNAC 1 cut(s) 205
MboII GAAGA 1 cut(s) 211
MluCI AATT 2 cut(s) 84, 236
MnlI CCTC 4 cut(s) 32, 53, 71, 97
MreI CGCCGGCG 1 cut(s) 68
MroNI GCCGGC 1 cut(s) 68
MseI TTAA 2 cut(s) 177, 234
MspCI CTTAAG 1 cut(s) 176
MspI CCGG 1 cut(s) 69
MwoI GCNNNNNNNGC 3 cut(s) 65, 115, 161
NaeI GCCGGC 1 cut(s) 70
NgoMIV GCCGGC 1 cut(s) 68
NheI GCTAGC 1 cut(s) 109
NlaIII CATG 1 cut(s) 83
NlaIV GGNNCC 2 cut(s) 41, 52
NmuCI GTSAC 1 cut(s) 205
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PdiI GCCGGC 1 cut(s) 70
PkrI GCNGC 1 cut(s) 97
PspN4I GGNNCC 2 cut(s) 41, 52
PspPI GGNCC 1 cut(s) 39
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SaqAI TTAA 2 cut(s) 177, 234
SatI GCNGC 1 cut(s) 96
Sau96I GGNCC 1 cut(s) 39
SetI ASST 5 cut(s) 24, 111, 115, 140, 173
SgrAI CRCCGGYG 1 cut(s) 68
SinI GGWCC 1 cut(s) 39
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 2 cut(s) 84, 236
SsiI CCGC 1 cut(s) 96
SspMI CTAG 1 cut(s) 110
TaqI TCGA 1 cut(s) 222
TasI AATT 2 cut(s) 84, 236
TauI GCSGC 1 cut(s) 98
Tru1I TTAA 2 cut(s) 177, 234
Tru9I TTAA 2 cut(s) 177, 234
TscAI CASTG 4 cut(s) 19, 61, 105, 214
TseFI GTSAC 1 cut(s) 205
Tsp45I GTSAC 1 cut(s) 205
TspRI CASTG 4 cut(s) 19, 61, 105, 214
Vha464I CTTAAG 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 39
XapI RAATTY 1 cut(s) 236
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.