Rh2DG260500

Tropinone reductase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0019369
Physical Location & Seq
Reverse (-)
27936707 .. 27937256
550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG260500.1

Sequence Viewer

Length: 267 bp
ATGACAAAAATGGCAGAGAGCAGTGGCAACCTCGCAAATTCGAGATGGTCCCTCAGGGGAACCACTGCCCTCGTCCTTGGCGGCACTCGTGGAATTGGGTACGCCGCAGTGGAGGAGCTAGTTGCGCTTGGTGTGTTTGTGTTCACCTGTTCTCGGAACGTGGCAGAACTTGCAGAAAGGTGTCTTAAGGAATGGTCGGCTAAGGAGTTCTATGTCACTGGGGTTGTCTTCGATGTTTTGATTAAATTTGATAAAGAGAAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

88

Amino Acids

9.65

Weight (kDa)

7.76

Isoelectric Point (pI)

36.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 22 - 79 6.6e-08 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019369)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0122161 RchiOBHm_Chr4g0423501 RchiOBHm_Chr7g0223341
rosa_multiflora Rmu_sc0000805.1_g000031 Rmu_sc0002764.1_g000024
rosa_roxburghii Rroxscaffold_3G00224030
rosa_samantha Rh2AG252300 Rh2DG260500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 81, 105
AcsI RAATTY 2 cut(s) 37, 245
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 1 cut(s) 153
AflII CTTAAG 1 cut(s) 185
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
ApoI RAATTY 2 cut(s) 37, 245
AspLEI GCGC 1 cut(s) 127
AspS9I GGNCC 1 cut(s) 48
AsuHPI GGTGA 1 cut(s) 136
AvaII GGWCC 1 cut(s) 48
AxyI CCTNAGG 1 cut(s) 53
BauI CACGAG 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 220
BccI CCATC 1 cut(s) 39
BfaI CTAG 1 cut(s) 119
BfrI CTTAAG 1 cut(s) 185
BisI GCNGC 2 cut(s) 82, 105
BlsI GCNGC 2 cut(s) 83, 106
Bme18I GGWCC 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 48
BmiI GGNNCC 2 cut(s) 50, 61
BmrI ACTGGG 1 cut(s) 228
BmuI ACTGGG 1 cut(s) 228
BpiI GAAGAC 1 cut(s) 220
Bpu10I CCTNAGC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 153
Bse1I ACTGG 1 cut(s) 223
Bse21I CCTNAGG 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 76
BseLI CCNNNNNNNGG 1 cut(s) 153
BseMII CTCAG 1 cut(s) 67
BseNI ACTGG 1 cut(s) 223
BseRI GAGGAG 1 cut(s) 128
BslFI GGGAC 1 cut(s) 34
BslI CCNNNNNNNGG 1 cut(s) 153
BsmFI GGGAC 1 cut(s) 34
BspACI CCGC 2 cut(s) 81, 105
BspCNI CTCAG 1 cut(s) 66
BspLI GGNNCC 2 cut(s) 50, 61
BspTI CTTAAG 1 cut(s) 185
BsrI ACTGG 1 cut(s) 223
BssECI CCNNGG 1 cut(s) 76
BssSI CACGAG 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 76
Bst2BI CACGAG 1 cut(s) 87
BstAFI CTTAAG 1 cut(s) 185
BstAPI GCANNNNNTGC 1 cut(s) 170
BstDEI CTNAG 2 cut(s) 53, 201
BstHHI GCGC 1 cut(s) 127
BstMWI GCNNNNNNNGC 2 cut(s) 124, 170
BstV2I GAAGAC 1 cut(s) 220
Bsu36I CCTNAGG 1 cut(s) 53
BtsI GCAGTG 3 cut(s) 28, 63, 114
BtsIMutI CAGTG 4 cut(s) 28, 63, 114, 216
CfoI GCGC 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 48
Csp6I GTAC 1 cut(s) 100
CviJI RGCY 2 cut(s) 118, 200
CviKI_1 RGCY 2 cut(s) 118, 200
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 2 cut(s) 53, 201
Eco130I CCWWGG 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 48
Eco81I CCTNAGG 1 cut(s) 53
EcoT14I CCWWGG 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 76
FaiI YATR 1 cut(s) 213
FaqI GGGAC 1 cut(s) 34
Fnu4HI GCNGC 2 cut(s) 82, 105
Fsp4HI GCNGC 2 cut(s) 82, 105
FspBI CTAG 1 cut(s) 119
GlaI GCGC 1 cut(s) 126
GluI GCNGC 2 cut(s) 82, 105
HhaI GCGC 1 cut(s) 127
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 144
Hpy188I TCNGA 1 cut(s) 156
Hpy188III TCNNGA 1 cut(s) 42
Hpy8I GTNNAC 1 cut(s) 144
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 2 cut(s) 124, 170
HpyF3I CTNAG 2 cut(s) 53, 201
HpySE526I ACGT 1 cut(s) 159
HspAI GCGC 1 cut(s) 125
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 3 cut(s) 40, 160, 204
MaeI CTAG 1 cut(s) 119
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 1 cut(s) 214
MboII GAAGA 1 cut(s) 220
MluCI AATT 3 cut(s) 37, 93, 245
MnlI CCTC 4 cut(s) 41, 62, 80, 106
MseI TTAA 2 cut(s) 186, 243
MspCI CTTAAG 1 cut(s) 185
MwoI GCNNNNNNNGC 2 cut(s) 124, 170
NlaIV GGNNCC 2 cut(s) 50, 61
NmuCI GTSAC 1 cut(s) 214
PkrI GCNGC 2 cut(s) 83, 106
PspN4I GGNNCC 2 cut(s) 50, 61
PspPI GGNCC 1 cut(s) 48
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SaqAI TTAA 2 cut(s) 186, 243
SatI GCNGC 2 cut(s) 82, 105
Sau96I GGNCC 1 cut(s) 48
SetI ASST 5 cut(s) 33, 120, 149, 162, 182
SinI GGWCC 1 cut(s) 48
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 3 cut(s) 37, 93, 245
SsiI CCGC 2 cut(s) 81, 105
SspMI CTAG 1 cut(s) 119
StyI CCWWGG 1 cut(s) 76
TaiI ACGT 1 cut(s) 162
TaqI TCGA 2 cut(s) 41, 231
TasI AATT 3 cut(s) 37, 93, 245
TauI GCSGC 2 cut(s) 84, 107
Tru1I TTAA 2 cut(s) 186, 243
Tru9I TTAA 2 cut(s) 186, 243
TscAI CASTG 4 cut(s) 28, 70, 114, 223
TseFI GTSAC 1 cut(s) 214
Tsp45I GTSAC 1 cut(s) 214
TspRI CASTG 4 cut(s) 28, 70, 114, 223
Vha464I CTTAAG 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 48
XapI RAATTY 2 cut(s) 37, 245
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.