RchiOBHm_Chr7g0223341

Tropinone reductase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0019369
Physical Location & Seq
Reverse (-)
45008649 .. 45008906
258 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19997

Sequence Viewer

Length: 258 bp
ATGGCAGAGAGCAGTGGCAACCTCGCAAATCCGAGATGGTCCCTCAGGGGAACCATTGCCCTCGTCCCCGGCGGCACTCGTGGAATTGGGTACGACGCAGTGGAGAAGCTAGTTGCGCTTGGTGTGTTTGTGTTCACTTGTTCTCGGAACTTGGCAGAACTTGTAGAAAGGTGTCTTAAGGAATGGTTGGCTAAGGAGTTCTGTGTCACTGGGGTTGTCTTCGATGTTTTGATTAAATTTGATAAAGAGAAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

85

Amino Acids

9.35

Weight (kDa)

7.69

Isoelectric Point (pI)

24.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 19 - 76 3.4e-06 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019369)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0122161 RchiOBHm_Chr4g0423501 RchiOBHm_Chr7g0223341
rosa_multiflora Rmu_sc0000805.1_g000031 Rmu_sc0002764.1_g000024
rosa_roxburghii Rroxscaffold_3G00224030
rosa_samantha Rh2AG252300 Rh2DG260500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 72
AcsI RAATTY 1 cut(s) 236
AfaI GTAC 1 cut(s) 92
AflII CTTAAG 1 cut(s) 176
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
ApoI RAATTY 1 cut(s) 236
AspLEI GCGC 1 cut(s) 118
AspS9I GGNCC 1 cut(s) 39
AsuC2I CCSGG 1 cut(s) 69
AvaII GGWCC 1 cut(s) 39
AxyI CCTNAGG 1 cut(s) 44
BauI CACGAG 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 211
BccI CCATC 1 cut(s) 30
BcnI CCSGG 1 cut(s) 69
BfaI CTAG 1 cut(s) 110
BfrI CTTAAG 1 cut(s) 176
BisI GCNGC 1 cut(s) 73
BlsI GCNGC 1 cut(s) 74
Bme1390I CCNGG 1 cut(s) 69
Bme18I GGWCC 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 39
BmiI GGNNCC 2 cut(s) 41, 52
BmrFI CCNGG 1 cut(s) 69
BmrI ACTGGG 1 cut(s) 219
BmuI ACTGGG 1 cut(s) 219
BpiI GAAGAC 1 cut(s) 211
Bpu10I CCTNAGC 1 cut(s) 192
BpuMI CCSGG 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 67
Bse1I ACTGG 1 cut(s) 214
Bse21I CCTNAGG 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 54
BseDI CCNNGG 1 cut(s) 67
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 1 cut(s) 58
BseNI ACTGG 1 cut(s) 214
BsiSI CCGG 1 cut(s) 69
BslFI GGGAC 2 cut(s) 25, 50
BsmFI GGGAC 2 cut(s) 25, 50
BspACI CCGC 1 cut(s) 72
BspCNI CTCAG 1 cut(s) 57
BspLI GGNNCC 2 cut(s) 41, 52
BspTI CTTAAG 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 54
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 67
BssSI CACGAG 1 cut(s) 78
Bst2BI CACGAG 1 cut(s) 78
BstAFI CTTAAG 1 cut(s) 176
BstDEI CTNAG 2 cut(s) 44, 192
BstHHI GCGC 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 115
BstSCI CCNGG 1 cut(s) 67
BstV2I GAAGAC 1 cut(s) 211
Bsu36I CCTNAGG 1 cut(s) 44
BtsI GCAGTG 2 cut(s) 19, 105
BtsIMutI CAGTG 3 cut(s) 19, 105, 207
CfoI GCGC 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 39
CseI GACGC 1 cut(s) 104
Csp6I GTAC 1 cut(s) 91
CviJI RGCY 2 cut(s) 109, 191
CviKI_1 RGCY 2 cut(s) 109, 191
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 2 cut(s) 44, 192
Eco47I GGWCC 1 cut(s) 39
Eco81I CCTNAGG 1 cut(s) 44
FaqI GGGAC 2 cut(s) 25, 50
Fnu4HI GCNGC 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 73
FspBI CTAG 1 cut(s) 110
GlaI GCGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 73
HapII CCGG 1 cut(s) 69
HgaI GACGC 1 cut(s) 104
HhaI GCGC 1 cut(s) 118
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HpaII CCGG 1 cut(s) 69
Hpy166II GTNNAC 1 cut(s) 135
Hpy188I TCNGA 2 cut(s) 33, 147
Hpy8I GTNNAC 1 cut(s) 135
Hpy99I CGWCG 1 cut(s) 98
HpyF10VI GCNNNNNNNGC 1 cut(s) 115
HpyF3I CTNAG 2 cut(s) 44, 192
HspAI GCGC 1 cut(s) 116
LpnPI CCDG 3 cut(s) 31, 82, 195
MaeI CTAG 1 cut(s) 110
MaeIII GTNAC 1 cut(s) 205
MboII GAAGA 1 cut(s) 211
MluCI AATT 2 cut(s) 84, 236
MnlI CCTC 3 cut(s) 32, 53, 71
MseI TTAA 2 cut(s) 177, 234
MspCI CTTAAG 1 cut(s) 176
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 115
NciI CCSGG 1 cut(s) 69
NlaIV GGNNCC 2 cut(s) 41, 52
NmuCI GTSAC 1 cut(s) 205
PkrI GCNGC 1 cut(s) 74
PspN4I GGNNCC 2 cut(s) 41, 52
PspPI GGNCC 1 cut(s) 39
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SaqAI TTAA 2 cut(s) 177, 234
SatI GCNGC 1 cut(s) 73
Sau96I GGNCC 1 cut(s) 39
ScrFI CCNGG 1 cut(s) 69
SetI ASST 3 cut(s) 24, 111, 173
SinI GGWCC 1 cut(s) 39
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 2 cut(s) 84, 236
SsiI CCGC 1 cut(s) 72
SspMI CTAG 1 cut(s) 110
StyD4I CCNGG 1 cut(s) 67
TaqI TCGA 1 cut(s) 222
TasI AATT 2 cut(s) 84, 236
TauI GCSGC 1 cut(s) 75
Tru1I TTAA 2 cut(s) 177, 234
Tru9I TTAA 2 cut(s) 177, 234
TscAI CASTG 3 cut(s) 19, 105, 214
TseFI GTSAC 1 cut(s) 205
Tsp45I GTSAC 1 cut(s) 205
TspRI CASTG 3 cut(s) 19, 105, 214
Vha464I CTTAAG 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 39
XapI RAATTY 1 cut(s) 236
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.