Rroxscaffold_3G00224030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0019369
Physical Location & Seq
Reverse (-)
7212797 .. 7221072
8276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00224030.1

Sequence Viewer

Length: 426 bp
ATGTTCGGCCGGGAGAGAGCAACTCTCTCTGTTTGTGTTTTTTCGCTAGTAAAGAGACACATGACTACACTTACATATGTGAAGGAGAAGCCATCCAGAAAGATGATGGATGAAGTCAAATCAGAGAGGGTAAAAAGTAAAAACATGAATATTGTGGAAAGAGAAGGAGCTGAGATGCCTGGAAACTCAGTTGGTTTGATTAGGAGTGGATGCCCGCAGCTTCGCCTCGACCTTGCGCAGCTGCTGGTGGCAGCCTTGCACCGCAACATGGCCGGCAGCCGACGGCAGAGGACAAGGTTCCGTTTTGAGCTCGTTTTAGTTCGATCTCGATATCTCGAGTTACGGGCCACCAATTCTCTTGATTATTGGCTCGTTGGACTCGCCTCAACTTTCGAACAAGCACCAAGAAGGACAGGACTCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

16.25

Weight (kDa)

10.66

Isoelectric Point (pI)

47.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019369)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0122161 RchiOBHm_Chr4g0423501 RchiOBHm_Chr7g0223341
rosa_multiflora Rmu_sc0000805.1_g000031 Rmu_sc0002764.1_g000024
rosa_roxburghii Rroxscaffold_3G00224030
rosa_samantha Rh2AG252300 Rh2DG260500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 237
AciI CCGC 2 cut(s) 215, 262
AcoI YGGCCR 2 cut(s) 7, 270
AfiI CCNNNNNNNGG 1 cut(s) 268
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 4 cut(s) 170, 220, 241, 310
AluI AGCT 4 cut(s) 170, 220, 241, 310
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 49
AlwNI CAGNNNCTG 1 cut(s) 244
Ama87I CYCGRG 2 cut(s) 335, 419
AoxI GGCC 3 cut(s) 7, 270, 345
ApeKI GCWGC 5 cut(s) 217, 238, 241, 251, 276
AspLEI GCGC 1 cut(s) 238
AspS9I GGNCC 1 cut(s) 345
AsuC2I CCSGG 1 cut(s) 11
AsuII TTCGAA 1 cut(s) 393
AvaI CYCGRG 2 cut(s) 335, 419
BanII GRGCYC 1 cut(s) 312
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 5 cut(s) 228, 229, 250, 263, 288
BccI CCATC 2 cut(s) 100, 100
BceAI ACGGC 1 cut(s) 299
BciT130I CCWGG 1 cut(s) 180
BcnI CCSGG 1 cut(s) 11
BcoDI GTCTC 1 cut(s) 49
BfaI CTAG 1 cut(s) 47
BisI GCNGC 5 cut(s) 218, 239, 242, 252, 277
BlsI GCNGC 5 cut(s) 219, 240, 243, 253, 278
Bme1390I CCNGG 2 cut(s) 11, 180
BmeT110I CYCGRG 2 cut(s) 335, 419
BmgT120I GGNCC 1 cut(s) 345
BmiI GGNNCC 1 cut(s) 299
BmrFI CCNGG 2 cut(s) 11, 180
BmsI GCATC 2 cut(s) 165, 200
BplI GAGNNNNNCTC 4 cut(s) 7, 39, 9, 41
Bpu14I TTCGAA 1 cut(s) 393
BpuMI CCSGG 1 cut(s) 11
Bsc4I CCNNNNNNNGG 1 cut(s) 268
Bse118I RCCGGY 1 cut(s) 272
BseBI CCWGG 1 cut(s) 180
BseGI GGATG 3 cut(s) 92, 115, 215
BseLI CCNNNNNNNGG 1 cut(s) 268
BseMII CTCAG 2 cut(s) 162, 201
BseX3I CGGCCG 1 cut(s) 7
BseXI GCAGC 5 cut(s) 228, 229, 250, 263, 288
Bsh1285I CGRYCG 1 cut(s) 10
BshFI GGCC 3 cut(s) 9, 272, 347
BsiEI CGRYCG 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 312
BsiHKCI CYCGRG 2 cut(s) 335, 419
BsiSI CCGG 2 cut(s) 10, 273
BslI CCNNNNNNNGG 1 cut(s) 268
BsmAI GTCTC 1 cut(s) 49
BsnI GGCC 3 cut(s) 9, 272, 347
BsoBI CYCGRG 2 cut(s) 335, 419
Bsp119I TTCGAA 1 cut(s) 393
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 1 cut(s) 323
BspACI CCGC 2 cut(s) 215, 262
BspANI GGCC 3 cut(s) 9, 272, 347
BspCNI CTCAG 2 cut(s) 163, 200
BspLI GGNNCC 1 cut(s) 299
BspT104I TTCGAA 1 cut(s) 393
BsrFI RCCGGY 1 cut(s) 272
BssAI RCCGGY 1 cut(s) 272
BssMI GATC 1 cut(s) 323
Bst2UI CCWGG 1 cut(s) 180
BstBI TTCGAA 1 cut(s) 393
BstC8I GCNNGC 2 cut(s) 215, 274
BstDEI CTNAG 2 cut(s) 171, 187
BstF5I GGATG 3 cut(s) 92, 115, 215
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 1 cut(s) 326
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 1 cut(s) 323
BstMCI CGRYCG 1 cut(s) 10
BstNI CCWGG 1 cut(s) 180
BstSCI CCNGG 2 cut(s) 9, 178
BstV1I GCAGC 5 cut(s) 228, 229, 250, 263, 288
BstZI CGGCCG 1 cut(s) 7
BsuRI GGCC 3 cut(s) 9, 272, 347
BtsCI GGATG 3 cut(s) 92, 115, 215
Cac8I GCNNGC 2 cut(s) 215, 274
CaiI CAGNNNCTG 1 cut(s) 244
CfoI GCGC 1 cut(s) 238
Cfr10I RCCGGY 1 cut(s) 272
Cfr13I GGNCC 1 cut(s) 345
CviAII CATG 3 cut(s) 61, 145, 268
DdeI CTNAG 2 cut(s) 171, 187
DpnI GATC 1 cut(s) 325
DpnII GATC 1 cut(s) 323
EaeI YGGCCR 2 cut(s) 7, 270
EagI CGGCCG 1 cut(s) 7
Ecl136II GAGCTC 1 cut(s) 310
EclXI CGGCCG 1 cut(s) 7
Eco24I GRGCYC 1 cut(s) 312
Eco32I GATATC 1 cut(s) 332
Eco52I CGGCCG 1 cut(s) 7
Eco53kI GAGCTC 1 cut(s) 310
Eco88I CYCGRG 2 cut(s) 335, 419
EcoICRI GAGCTC 1 cut(s) 310
EcoRII CCWGG 1 cut(s) 178
EcoRV GATATC 1 cut(s) 332
EcoT38I GRGCYC 1 cut(s) 312
FaeI CATG 3 cut(s) 64, 148, 271
FaiI YATR 5 cut(s) 62, 76, 78, 146, 269
FatI CATG 3 cut(s) 60, 144, 267
FauI CCCGC 1 cut(s) 222
FauNDI CATATG 1 cut(s) 76
Fnu4HI GCNGC 5 cut(s) 218, 239, 242, 252, 277
FokI GGATG 3 cut(s) 79, 122, 222
FriOI GRGCYC 1 cut(s) 312
Fsp4HI GCNGC 5 cut(s) 218, 239, 242, 252, 277
FspBI CTAG 1 cut(s) 47
FspI TGCGCA 1 cut(s) 237
GlaI GCGC 1 cut(s) 237
GluI GCNGC 5 cut(s) 218, 239, 242, 252, 277
HaeIII GGCC 3 cut(s) 9, 272, 347
HapII CCGG 2 cut(s) 10, 273
HhaI GCGC 1 cut(s) 238
Hin1II CATG 3 cut(s) 64, 148, 271
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HinfI GANTC 2 cut(s) 378, 417
HpaII CCGG 2 cut(s) 10, 273
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 4 cut(s) 96, 327, 335, 359
Hpy99I CGWCG 1 cut(s) 285
HpyAV CCTTC 3 cut(s) 76, 158, 402
HpyCH4V TGCA 1 cut(s) 259
HpyF3I CTNAG 2 cut(s) 171, 187
Hsp92II CATG 3 cut(s) 64, 148, 271
HspAI GCGC 1 cut(s) 236
KroI GCCGGC 1 cut(s) 272
KroNI GCCGGC 1 cut(s) 274
Kzo9I GATC 1 cut(s) 323
LmnI GCTCC 1 cut(s) 167
LpnPI CCDG 7 cut(s) 23, 109, 165, 192, 230, 286, 399
Lsp1109I GCAGC 5 cut(s) 228, 229, 250, 263, 288
LweI GCATC 2 cut(s) 165, 200
MaeI CTAG 1 cut(s) 47
MaeIII GTNAC 1 cut(s) 339
MalI GATC 1 cut(s) 325
MboI GATC 1 cut(s) 323
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 1 cut(s) 352
MlyI GAGTC 2 cut(s) 372, 411
MmeI TCCRAC 1 cut(s) 355
MnlI CCTC 4 cut(s) 120, 236, 282, 394
MroNI GCCGGC 1 cut(s) 272
MspA1I CMGCKG 1 cut(s) 241
MspI CCGG 2 cut(s) 10, 273
MspR9I CCNGG 2 cut(s) 11, 180
MvaI CCWGG 1 cut(s) 180
NaeI GCCGGC 1 cut(s) 274
NciI CCSGG 1 cut(s) 11
NdeI CATATG 1 cut(s) 76
NdeII GATC 1 cut(s) 323
NgoMIV GCCGGC 1 cut(s) 272
NlaIII CATG 3 cut(s) 64, 148, 271
NlaIV GGNNCC 1 cut(s) 299
NsbI TGCGCA 1 cut(s) 237
NspV TTCGAA 1 cut(s) 393
PaeR7I CTCGAG 2 cut(s) 335, 419
PdiI GCCGGC 1 cut(s) 274
PkrI GCNGC 5 cut(s) 219, 240, 243, 253, 278
PleI GAGTC 2 cut(s) 372, 411
PpsI GAGTC 2 cut(s) 372, 411
Psp124BI GAGCTC 1 cut(s) 312
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 299
PspPI GGNCC 1 cut(s) 345
PspXI VCTCGAGB 1 cut(s) 419
PstNI CAGNNNCTG 1 cut(s) 244
PvuII CAGCTG 1 cut(s) 241
SacI GAGCTC 1 cut(s) 312
SatI GCNGC 5 cut(s) 218, 239, 242, 252, 277
Sau3AI GATC 1 cut(s) 323
Sau96I GGNCC 1 cut(s) 345
SchI GAGTC 2 cut(s) 372, 411
ScrFI CCNGG 2 cut(s) 11, 180
SduI GDGCHC 1 cut(s) 312
SetI ASST 6 cut(s) 172, 222, 234, 243, 299, 312
SfaNI GCATC 2 cut(s) 165, 200
Sfr274I CTCGAG 2 cut(s) 335, 419
SfuI TTCGAA 1 cut(s) 393
SlaI CTCGAG 2 cut(s) 335, 419
SmlI CTYRAG 2 cut(s) 335, 419
SmoI CTYRAG 2 cut(s) 335, 419
Sse9I AATT 1 cut(s) 352
SsiI CCGC 2 cut(s) 215, 262
SspI AATATT 1 cut(s) 151
SspMI CTAG 1 cut(s) 47
SstI GAGCTC 1 cut(s) 312
StyD4I CCNGG 2 cut(s) 9, 178
TaqI TCGA 6 cut(s) 228, 322, 328, 336, 393, 420
TasI AATT 1 cut(s) 352
TseI GCWGC 5 cut(s) 217, 238, 241, 251, 276
TspDTI ATGAA 2 cut(s) 126, 161
TspGWI ACGGA 1 cut(s) 290
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XhoI CTCGAG 2 cut(s) 335, 419
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.