RchiOBHm_Chr4g0423501

Tropinone reductase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0019369
Physical Location & Seq
Forward (+)
49141923 .. 49142440
518 bp
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UTR
Exon/CDS
Intron
PRQ39286

Sequence Viewer

Length: 333 bp
ATGGCAGAGAGCAGCGGCAACCTCTCAAATCTGAGATGGTCCCTCAGGGGAACCACTGCCCTCGTCGCCGGCGACACTCGTGGAATTGGGTACGCAGCAGTGGAGGAGCTAGCTGCGCTTGGTGTGTTTGTGTTTGCCTGTTCTTGGAACTCGGCAGAACTTGCAGAAAGGTGTCTTAAGGAATGGTCGGCTAAGGAGTTCTGTGTCACTGGGGTTATCTTCGATGTGAACAATGTTGGGACAAACATAAGGAAGCCAACTACTGGGTACACTTCTGAAGAGTATTCAAAACTAATGGCTACTAATTTGGAATCTGCTACATCTTTAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

110

Amino Acids

11.82

Weight (kDa)

4.88

Isoelectric Point (pI)

29.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 19 - 76 1.7e-06 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019369)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0122161 RchiOBHm_Chr4g0423501 RchiOBHm_Chr7g0223341
rosa_multiflora Rmu_sc0000805.1_g000031 Rmu_sc0002764.1_g000024
rosa_roxburghii Rroxscaffold_3G00224030
rosa_samantha Rh2AG252300 Rh2DG260500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 263
AciI CCGC 1 cut(s) 15
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 2 cut(s) 92, 269
AfiI CCNNNNNNNGG 2 cut(s) 144, 263
AflII CTTAAG 1 cut(s) 176
AgsI TTSAA 1 cut(s) 288
AluBI AGCT 2 cut(s) 109, 113
AluI AGCT 2 cut(s) 109, 113
ApeKI GCWGC 3 cut(s) 12, 95, 113
AspLEI GCGC 1 cut(s) 118
AspS9I GGNCC 1 cut(s) 39
AsuNHI GCTAGC 1 cut(s) 109
AvaII GGWCC 1 cut(s) 39
AxyI CCTNAGG 1 cut(s) 44
BauI CACGAG 1 cut(s) 78
BbvI GCAGC 3 cut(s) 24, 100, 107
BccI CCATC 1 cut(s) 30
BfaI CTAG 1 cut(s) 110
BfrI CTTAAG 1 cut(s) 176
BisI GCNGC 4 cut(s) 13, 16, 96, 114
BlsI GCNGC 4 cut(s) 14, 17, 97, 115
Bme18I GGWCC 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 39
BmiI GGNNCC 2 cut(s) 41, 52
BmrI ACTGGG 2 cut(s) 219, 273
BmtI GCTAGC 1 cut(s) 113
BmuI ACTGGG 2 cut(s) 219, 273
Bpu10I CCTNAGC 1 cut(s) 192
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 263
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 2 cut(s) 214, 268
Bse21I CCTNAGG 1 cut(s) 44
BseLI CCNNNNNNNGG 2 cut(s) 144, 263
BseMII CTCAG 2 cut(s) 23, 58
BseNI ACTGG 2 cut(s) 214, 268
BseRI GAGGAG 1 cut(s) 119
BseXI GCAGC 3 cut(s) 24, 100, 107
BsiSI CCGG 1 cut(s) 69
BslFI GGGAC 2 cut(s) 25, 253
BslI CCNNNNNNNGG 2 cut(s) 144, 263
BsmFI GGGAC 2 cut(s) 25, 253
BspACI CCGC 1 cut(s) 15
BspCNI CTCAG 2 cut(s) 24, 57
BspLI GGNNCC 2 cut(s) 41, 52
BspOI GCTAGC 1 cut(s) 113
BspTI CTTAAG 1 cut(s) 176
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 2 cut(s) 214, 268
BssAI RCCGGY 1 cut(s) 68
BssSI CACGAG 1 cut(s) 78
Bst2BI CACGAG 1 cut(s) 78
Bst6I CTCTTC 1 cut(s) 273
BstAFI CTTAAG 1 cut(s) 176
BstAPI GCANNNNNTGC 1 cut(s) 161
BstC8I GCNNGC 2 cut(s) 70, 111
BstDEI CTNAG 3 cut(s) 32, 44, 192
BstHHI GCGC 1 cut(s) 118
BstMWI GCNNNNNNNGC 3 cut(s) 65, 115, 161
BstV1I GCAGC 3 cut(s) 24, 100, 107
Bsu36I CCTNAGG 1 cut(s) 44
BtsI GCAGTG 2 cut(s) 54, 105
BtsIMutI CAGTG 3 cut(s) 54, 105, 207
Cac8I GCNNGC 2 cut(s) 70, 111
CfoI GCGC 1 cut(s) 118
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 39
Csp6I GTAC 2 cut(s) 91, 268
CviJI RGCY 5 cut(s) 109, 113, 191, 256, 299
CviKI_1 RGCY 5 cut(s) 109, 113, 191, 256, 299
CviQI GTAC 2 cut(s) 91, 268
DdeI CTNAG 3 cut(s) 32, 44, 192
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
Eco47I GGWCC 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 297
Eco81I CCTNAGG 1 cut(s) 44
FaiI YATR 2 cut(s) 248, 331
FaqI GGGAC 2 cut(s) 25, 253
Fnu4HI GCNGC 4 cut(s) 13, 16, 96, 114
Fsp4HI GCNGC 4 cut(s) 13, 16, 96, 114
FspBI CTAG 1 cut(s) 110
GlaI GCGC 1 cut(s) 117
GluI GCNGC 4 cut(s) 13, 16, 96, 114
HapII CCGG 1 cut(s) 69
HhaI GCGC 1 cut(s) 118
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HinfI GANTC 1 cut(s) 311
HpaII CCGG 1 cut(s) 69
Hpy166II GTNNAC 2 cut(s) 229, 270
Hpy188I TCNGA 2 cut(s) 33, 277
Hpy8I GTNNAC 2 cut(s) 229, 270
Hpy99I CGWCG 1 cut(s) 68
HpyCH4V TGCA 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 115, 161
HpyF3I CTNAG 3 cut(s) 32, 44, 192
HspAI GCGC 1 cut(s) 116
KroI GCCGGC 1 cut(s) 68
KroNI GCCGGC 1 cut(s) 70
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 5 cut(s) 31, 82, 151, 195, 249
Lsp1109I GCAGC 3 cut(s) 24, 100, 107
MaeI CTAG 1 cut(s) 110
MaeIII GTNAC 1 cut(s) 205
MboII GAAGA 2 cut(s) 211, 290
MluCI AATT 2 cut(s) 84, 304
MnlI CCTC 4 cut(s) 32, 53, 71, 97
MreI CGCCGGCG 1 cut(s) 68
MroNI GCCGGC 1 cut(s) 68
MseI TTAA 1 cut(s) 177
MspA1I CMGCKG 1 cut(s) 15
MspCI CTTAAG 1 cut(s) 176
MspI CCGG 1 cut(s) 69
MwoI GCNNNNNNNGC 3 cut(s) 65, 115, 161
NaeI GCCGGC 1 cut(s) 70
NgoMIV GCCGGC 1 cut(s) 68
NheI GCTAGC 1 cut(s) 109
NlaIV GGNNCC 2 cut(s) 41, 52
NmeAIII GCCGAG 1 cut(s) 131
NmuCI GTSAC 1 cut(s) 205
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PdiI GCCGGC 1 cut(s) 70
PfeI GAWTC 1 cut(s) 311
PflMI CCANNNNNTGG 1 cut(s) 263
PkrI GCNGC 4 cut(s) 14, 17, 97, 115
PspN4I GGNNCC 2 cut(s) 41, 52
PspPI GGNCC 1 cut(s) 39
RsaI GTAC 2 cut(s) 92, 269
RsaNI GTAC 2 cut(s) 91, 268
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 4 cut(s) 13, 16, 96, 114
Sau96I GGNCC 1 cut(s) 39
SetI ASST 4 cut(s) 24, 111, 115, 173
SgrAI CRCCGGYG 1 cut(s) 68
SinI GGWCC 1 cut(s) 39
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 2 cut(s) 84, 304
SsiI CCGC 1 cut(s) 15
SspMI CTAG 1 cut(s) 110
TaqI TCGA 1 cut(s) 222
TasI AATT 2 cut(s) 84, 304
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 1 cut(s) 311
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 3 cut(s) 61, 105, 214
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 3 cut(s) 12, 95, 113
Tsp45I GTSAC 1 cut(s) 205
TspRI CASTG 3 cut(s) 61, 105, 214
Van91I CCANNNNNTGG 1 cut(s) 263
Vha464I CTTAAG 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 39
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.