Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018569

Physical Location & Seq

Genomic Coordinates Forward (+)

50201569 .. 50207088

Gene Structure 5520 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAGAGCACCTGCAAGAAAAGTTACCAGGCTGTTTGTTGCAAGGATCCCACAATCTGTGACAAAAGCAAAATTTCGAGGTCATTTTGGGAAATATGGAGAGATAACAGATTTATACATGCCGAAGGATCAAGGCTCAAAAATGCATCTAGGAATTGGGTTTATTACCTTTGAAAATGCAGACTCCGTGGAAAATTTAATGGCTGATACCCATGAATTGGGGGGTTCCAATGTAGTTGTTGATCGAGCAACACCCAAGGAAGATGACTTTAAACCAGTGAGCAGAATGCCAGCACCACAGGGTGGATATGGTGCATACAATGCGTATATCTCTGCAACCACTAGATATGCAACCCTTGGGGCTCCGACTTTCTTGGAGAACGTCAAGAGAACACAAGGCTTGGCCTTCAAGAACACGAACAGCCTTGGAGAAGTCCTAAAGCTCTTCACGACAAGAGGCTTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

155

Amino Acids

17.13

Weight (kDa)

9.73

Isoelectric Point (pI)

30.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	11 - 72	7.4e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018569)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0133441 RchiOBHm_Chr2g0141161 RchiOBHm_Chr5g0044281 RchiOBHm_Chr7g0214441
rosa_samantha	Rh2AG551300 Rh3AG007400 Rh3CG007200 Rh3DG007600 Rh5DG313800 Rh6AG111000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	19
Acc36I	ACCTGC	1 cut(s)	19
AccB7I	CCANNNNNTGG	2 cut(s)	217, 302
AclWI	GGATC	3 cut(s)	40, 53, 135
AcsI	RAATTY	2 cut(s)	71, 193
AdeI	CACNNNGTG	1 cut(s)	302
AfiI	CCNNNNNNNGG	2 cut(s)	217, 302
AgsI	TTSAA	2 cut(s)	173, 409
AjnI	CCWGG	1 cut(s)	26
AluBI	AGCT	1 cut(s)	442
AluI	AGCT	1 cut(s)	442
Alw21I	GWGCWC	1 cut(s)	10
AlwI	GGATC	3 cut(s)	40, 53, 135
AoxI	GGCC	1 cut(s)	402
ApoI	RAATTY	2 cut(s)	71, 193
BamHI	GGATCC	1 cut(s)	45
BanII	GRGCYC	1 cut(s)	364
Bbv12I	GWGCWC	1 cut(s)	10
BciT130I	CCWGG	1 cut(s)	28
BfaI	CTAG	2 cut(s)	149, 342
BfuAI	ACCTGC	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	28
BmiI	GGNNCC	3 cut(s)	47, 226, 363
BmrFI	CCNGG	1 cut(s)	28
BmsI	GCATC	1 cut(s)	154
BsaJI	CCNNGG	4 cut(s)	186, 255, 355, 424
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 302
Bse1I	ACTGG	1 cut(s)	275
BseBI	CCWGG	1 cut(s)	28
BseDI	CCNNGG	4 cut(s)	186, 255, 355, 424
BseLI	CCNNNNNNNGG	2 cut(s)	217, 302
BseNI	ACTGG	1 cut(s)	275
BshFI	GGCC	1 cut(s)	404
BsiHKAI	GWGCWC	1 cut(s)	10
BslI	CCNNNNNNNGG	2 cut(s)	217, 302
BsmI	GAATGC	1 cut(s)	291
BsnI	GGCC	1 cut(s)	404
Bsp1286I	GDGCHC	2 cut(s)	10, 364
Bsp143I	GATC	3 cut(s)	45, 127, 241
BspANI	GGCC	1 cut(s)	404
BspLI	GGNNCC	3 cut(s)	47, 226, 363
BspMI	ACCTGC	1 cut(s)	19
BspPI	GGATC	3 cut(s)	40, 53, 135
BspQI	GCTCTTC	1 cut(s)	449
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	4 cut(s)	186, 255, 355, 424
BssMI	GATC	3 cut(s)	45, 127, 241
BssT1I	CCWWGG	3 cut(s)	255, 355, 424
Bst2UI	CCWGG	1 cut(s)	28
Bst6I	CTCTTC	1 cut(s)	449
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	291
BstDSI	CCRYGG	1 cut(s)	186
BstKTI	GATC	3 cut(s)	48, 130, 244
BstMBI	GATC	3 cut(s)	45, 127, 241
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstNI	CCWGG	1 cut(s)	28
BstNSI	RCATGY	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	26
BstX2I	RGATCY	1 cut(s)	45
BstYI	RGATCY	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	404
BtgI	CCRYGG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	282
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	291
CviAII	CATG	2 cut(s)	118, 212
CviJI	RGCY	9 cut(s)	31, 135, 203, 362, 399, 404, 423, 442, 459
CviKI_1	RGCY	9 cut(s)	31, 135, 203, 362, 399, 404, 423, 442, 459
DpnI	GATC	3 cut(s)	47, 129, 243
DpnII	GATC	3 cut(s)	45, 127, 241
DraI	TTTAAA	1 cut(s)	271
DraIII	CACNNNGTG	1 cut(s)	302
Eam1104I	CTCTTC	1 cut(s)	449
EarI	CTCTTC	1 cut(s)	449
Eco130I	CCWWGG	3 cut(s)	255, 355, 424
Eco24I	GRGCYC	1 cut(s)	364
EcoRII	CCWGG	1 cut(s)	26
EcoT14I	CCWWGG	3 cut(s)	255, 355, 424
EcoT22I	ATGCAT	1 cut(s)	147
EcoT38I	GRGCYC	1 cut(s)	364
ErhI	CCWWGG	3 cut(s)	255, 355, 424
FaeI	CATG	2 cut(s)	121, 215
FaiI	YATR	8 cut(s)	96, 115, 119, 213, 309, 316, 327, 348
FatI	CATG	2 cut(s)	117, 211
FriOI	GRGCYC	1 cut(s)	364
FspBI	CTAG	2 cut(s)	149, 342
HaeIII	GGCC	1 cut(s)	404
Hin1II	CATG	2 cut(s)	121, 215
HinfI	GANTC	1 cut(s)	182
Hpy188I	TCNGA	2 cut(s)	366, 467
Hpy188III	TCNNGA	3 cut(s)	385, 409, 448
HpyAV	CCTTC	2 cut(s)	118, 415
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	7 cut(s)	14, 41, 145, 179, 314, 335, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpySE526I	ACGT	1 cut(s)	381
Hsp92II	CATG	2 cut(s)	121, 215
Kzo9I	GATC	3 cut(s)	45, 127, 241
LguI	GCTCTTC	1 cut(s)	449
LmnI	GCTCC	1 cut(s)	367
LpnPI	CCDG	6 cut(s)	13, 24, 40, 284, 288, 303
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	2 cut(s)	149, 342
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	2 cut(s)	22, 58
MalI	GATC	3 cut(s)	47, 129, 243
MboI	GATC	3 cut(s)	45, 127, 241
MboII	GAAGA	2 cut(s)	272, 436
MflI	RGATCY	1 cut(s)	45
MhlI	GDGCHC	2 cut(s)	10, 364
MluCI	AATT	4 cut(s)	71, 153, 193, 215
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	389
MnlI	CCTC	2 cut(s)	71, 449
Mph1103I	ATGCAT	1 cut(s)	147
MseI	TTAA	2 cut(s)	197, 270
MspR9I	CCNGG	1 cut(s)	28
Mva1269I	GAATGC	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	28
MwoI	GCNNNNNNNGC	1 cut(s)	320
NdeII	GATC	3 cut(s)	45, 127, 241
NlaIII	CATG	2 cut(s)	121, 215
NlaIV	GGNNCC	3 cut(s)	47, 226, 363
NmuCI	GTSAC	1 cut(s)	58
NsiI	ATGCAT	1 cut(s)	147
NspI	RCATGY	1 cut(s)	121
PaqCI	CACCTGC	1 cut(s)	19
PciSI	GCTCTTC	1 cut(s)	449
PctI	GAATGC	1 cut(s)	291
PflMI	CCANNNNNTGG	2 cut(s)	217, 302
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	26
PspN4I	GGNNCC	3 cut(s)	47, 226, 363
PsuI	RGATCY	1 cut(s)	45
SapI	GCTCTTC	1 cut(s)	449
SaqAI	TTAA	2 cut(s)	197, 270
Sau3AI	GATC	3 cut(s)	45, 127, 241
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	28
SduI	GDGCHC	2 cut(s)	10, 364
SetI	ASST	5 cut(s)	13, 82, 170, 384, 444
SfaNI	GCATC	1 cut(s)	154
Sse9I	AATT	4 cut(s)	71, 153, 193, 215
SspMI	CTAG	2 cut(s)	149, 342
StyD4I	CCNGG	1 cut(s)	26
StyI	CCWWGG	3 cut(s)	255, 355, 424
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	2 cut(s)	76, 244
TasI	AATT	4 cut(s)	71, 153, 193, 215
Tru1I	TTAA	2 cut(s)	197, 270
Tru9I	TTAA	2 cut(s)	197, 270
TscAI	CASTG	1 cut(s)	282
TseFI	GTSAC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	228
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	1 cut(s)	282
Van91I	CCANNNNNTGG	2 cut(s)	217, 302
XapI	RAATTY	2 cut(s)	71, 193
XceI	RCATGY	1 cut(s)	121
XspI	CTAG	2 cut(s)	149, 342
Zsp2I	ATGCAT	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.