Rh5DG313800

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0018569
Physical Location & Seq
Reverse (-)
40243082 .. 40250210
7129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG313800.1

Sequence Viewer

Length: 597 bp
ATGGCCTCAGATCACTATCCTATTCTTATTGAGTGTGAACCTCCTGGTAGTGAAAGTAGTAACCCTCGTAGGCGTGGTCGCAGGTTTTTGTTTGAAGAAATGTGGACTACAAAAGAAGAATGTGGTAAGGTGGTTAGTCAGGTATGGGCTGAGGGACGTCACATGACTGTGGTTACTAAAATAAGAGTAGTAGCAGAGTGGTTGAAAGTTTGGGAGAATGAGAAGTTTGGGTTGGTGCGCCGTGATATAACTGATTTAAGGAAGAAATTGGATGACCTACAGAGGCTCTACCCTTCGAGTGAGAATTTGCAGCAGCGAAGAAAAGTGGAGTTAAATTTGGATAAGGAAGAGATGAGAGCACCTGCAAGAAAAGTTACCAGGATTCATTTTGGGAAATATGGAGAGATAACAGATTTATACATGCCGAAGGATCAAGGCTCAAAAATGCATCGAGGAATTGGGTTTATTACCTTTGAAAATGCAGACTCCGTGGAAAATTTAATGGCCGATACCCATGAATTGGGGGGTTCCAATGAAGATGACTTTAAACCATTGGGCAGAATGCCAGCACCACAAGATCTCCCAAAACTATCCTAA

Protein Analysis

198

Amino Acids

23.03

Weight (kDa)

6.98

Isoelectric Point (pI)

65.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 129 - 169 9.6e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 370
AatII GACGTC 1 cut(s) 160
Acc36I ACCTGC 2 cut(s) 72, 370
AccB7I CCANNNNNTGG 1 cut(s) 520
AclWI GGATC 1 cut(s) 438
AcoI YGGCCR 1 cut(s) 504
AcsI RAATTY 3 cut(s) 304, 334, 496
AcyI GRCGYC 1 cut(s) 157
AfiI CCNNNNNNNGG 1 cut(s) 520
AgsI TTSAA 3 cut(s) 95, 205, 476
AjnI CCWGG 2 cut(s) 43, 377
AjuI GAANNNNNNNTTGG 2 cut(s) 215, 247
Alw21I GWGCWC 1 cut(s) 361
AlwI GGATC 1 cut(s) 438
AoxI GGCC 2 cut(s) 3, 504
ApeKI GCWGC 2 cut(s) 310, 313
ApoI RAATTY 3 cut(s) 304, 334, 496
AspLEI GCGC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 361
BbvCI CCTCAGC 1 cut(s) 150
BbvI GCAGC 2 cut(s) 322, 325
BceAI ACGGC 1 cut(s) 225
BciT130I CCWGG 2 cut(s) 45, 379
BfmI CTRYAG 1 cut(s) 278
BfuAI ACCTGC 2 cut(s) 72, 370
BglII AGATCT 1 cut(s) 577
BisI GCNGC 2 cut(s) 311, 314
BlsI GCNGC 2 cut(s) 312, 315
Bme1390I CCNGG 2 cut(s) 45, 379
BmiI GGNNCC 1 cut(s) 529
BmrFI CCNGG 2 cut(s) 45, 379
BmsI GCATC 1 cut(s) 457
Bpu10I CCTNAGC 1 cut(s) 150
BsaBI GATNNNNATC 1 cut(s) 15
BsaHI GRCGYC 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 489
BsaXI ACNNNNNCTCC 2 cut(s) 564, 594
Bsc4I CCNNNNNNNGG 1 cut(s) 520
Bse8I GATNNNNATC 1 cut(s) 15
BseBI CCWGG 2 cut(s) 45, 379
BseDI CCNNGG 1 cut(s) 489
BseGI GGATG 1 cut(s) 277
BseJI GATNNNNATC 1 cut(s) 15
BseLI CCNNNNNNNGG 1 cut(s) 520
BseMII CTCAG 2 cut(s) 21, 141
BseXI GCAGC 2 cut(s) 322, 325
BshFI GGCC 2 cut(s) 5, 506
BsiHKAI GWGCWC 1 cut(s) 361
BslFI GGGAC 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 520
BsmFI GGGAC 1 cut(s) 168
BsmI GAATGC 1 cut(s) 567
BsnI GGCC 2 cut(s) 5, 506
Bsp1286I GDGCHC 1 cut(s) 361
Bsp143I GATC 3 cut(s) 10, 430, 577
BspANI GGCC 2 cut(s) 5, 506
BspCNI CTCAG 2 cut(s) 20, 142
BspLI GGNNCC 1 cut(s) 529
BspMI ACCTGC 2 cut(s) 72, 370
BspPI GGATC 1 cut(s) 438
BssECI CCNNGG 1 cut(s) 489
BssMI GATC 3 cut(s) 10, 430, 577
BssNI GRCGYC 1 cut(s) 157
Bst2UI CCWGG 2 cut(s) 45, 379
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 342
BstACI GRCGYC 1 cut(s) 157
BstC8I GCNNGC 1 cut(s) 567
BstDEI CTNAG 2 cut(s) 7, 150
BstDSI CCRYGG 1 cut(s) 489
BstF5I GGATG 1 cut(s) 277
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 3 cut(s) 13, 433, 580
BstMBI GATC 3 cut(s) 10, 430, 577
BstNI CCWGG 2 cut(s) 45, 379
BstNSI RCATGY 1 cut(s) 424
BstSCI CCNGG 2 cut(s) 43, 377
BstSFI CTRYAG 1 cut(s) 278
BstV1I GCAGC 2 cut(s) 322, 325
BstX2I RGATCY 1 cut(s) 577
BstYI RGATCY 1 cut(s) 577
BsuRI GGCC 2 cut(s) 5, 506
BtgI CCRYGG 1 cut(s) 489
BtsCI GGATG 1 cut(s) 277
BveI ACCTGC 2 cut(s) 72, 370
Cac8I GCNNGC 1 cut(s) 567
CfoI GCGC 1 cut(s) 240
CviAII CATG 3 cut(s) 163, 421, 515
CviJI RGCY 5 cut(s) 5, 149, 286, 438, 506
CviKI_1 RGCY 5 cut(s) 5, 149, 286, 438, 506
DdeI CTNAG 2 cut(s) 7, 150
DpnI GATC 3 cut(s) 12, 432, 579
DpnII GATC 3 cut(s) 10, 430, 577
DraI TTTAAA 1 cut(s) 547
EaeI YGGCCR 1 cut(s) 504
Eam1104I CTCTTC 1 cut(s) 342
EarI CTCTTC 1 cut(s) 342
EcoRII CCWGG 2 cut(s) 43, 377
EcoT22I ATGCAT 1 cut(s) 450
FaeI CATG 3 cut(s) 166, 424, 518
FaiI YATR 7 cut(s) 145, 164, 248, 399, 418, 422, 516
FaqI GGGAC 1 cut(s) 168
FatI CATG 3 cut(s) 162, 420, 514
Fnu4HI GCNGC 2 cut(s) 311, 314
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 2 cut(s) 311, 314
GlaI GCGC 1 cut(s) 239
GluI GCNGC 2 cut(s) 311, 314
HaeIII GGCC 2 cut(s) 5, 506
HhaI GCGC 1 cut(s) 240
Hin1I GRCGYC 1 cut(s) 157
Hin1II CATG 3 cut(s) 166, 424, 518
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HinfI GANTC 2 cut(s) 382, 485
Hpy166II GTNNAC 2 cut(s) 38, 105
Hpy188I TCNGA 1 cut(s) 10
Hpy8I GTNNAC 2 cut(s) 38, 105
HpyAV CCTTC 2 cut(s) 303, 421
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 1 cut(s) 157
HpyCH4V TGCA 4 cut(s) 310, 365, 448, 482
HpyF3I CTNAG 2 cut(s) 7, 150
HpySE526I ACGT 1 cut(s) 157
Hsp92I GRCGYC 1 cut(s) 157
Hsp92II CATG 3 cut(s) 166, 424, 518
HspAI GCGC 1 cut(s) 238
Kzo9I GATC 3 cut(s) 10, 430, 577
LpnPI CCDG 8 cut(s) 30, 57, 67, 125, 364, 375, 391, 579
Lsp1109I GCAGC 2 cut(s) 322, 325
LweI GCATC 1 cut(s) 457
MaeII ACGT 1 cut(s) 157
MaeIII GTNAC 4 cut(s) 59, 158, 172, 373
MalI GATC 3 cut(s) 12, 432, 579
MboI GATC 3 cut(s) 10, 430, 577
MboII GAAGA 6 cut(s) 107, 128, 274, 330, 359, 548
MflI RGATCY 1 cut(s) 577
MhlI GDGCHC 1 cut(s) 361
MluCI AATT 6 cut(s) 266, 304, 334, 456, 496, 518
MlyI GAGTC 1 cut(s) 479
MnlI CCTC 6 cut(s) 16, 51, 75, 145, 276, 446
Mph1103I ATGCAT 1 cut(s) 450
MseI TTAA 4 cut(s) 257, 332, 500, 546
MslI CAYNNNNRTG 1 cut(s) 167
MspR9I CCNGG 2 cut(s) 45, 379
Mva1269I GAATGC 1 cut(s) 567
MvaI CCWGG 2 cut(s) 45, 379
NdeII GATC 3 cut(s) 10, 430, 577
NlaIII CATG 3 cut(s) 166, 424, 518
NlaIV GGNNCC 1 cut(s) 529
NmuCI GTSAC 1 cut(s) 158
NsiI ATGCAT 1 cut(s) 450
NspI RCATGY 1 cut(s) 424
PaqCI CACCTGC 1 cut(s) 370
PctI GAATGC 1 cut(s) 567
PfeI GAWTC 1 cut(s) 382
PflMI CCANNNNNTGG 1 cut(s) 520
PkrI GCNGC 2 cut(s) 312, 315
PleI GAGTC 1 cut(s) 479
PpsI GAGTC 1 cut(s) 479
Psp6I CCWGG 2 cut(s) 43, 377
PspGI CCWGG 2 cut(s) 43, 377
PspN4I GGNNCC 1 cut(s) 529
PsuI RGATCY 1 cut(s) 577
RseI CAYNNNNRTG 1 cut(s) 167
SaqAI TTAA 4 cut(s) 257, 332, 500, 546
SatI GCNGC 2 cut(s) 311, 314
Sau3AI GATC 3 cut(s) 10, 430, 577
SchI GAGTC 1 cut(s) 479
ScrFI CCNGG 2 cut(s) 45, 379
SduI GDGCHC 1 cut(s) 361
SetI ASST 8 cut(s) 43, 86, 132, 144, 160, 279, 364, 473
SfaNI GCATC 1 cut(s) 457
SfcI CTRYAG 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 167
Sse9I AATT 6 cut(s) 266, 304, 334, 456, 496, 518
StyD4I CCNGG 2 cut(s) 43, 377
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 1 cut(s) 160
TaqI TCGA 2 cut(s) 296, 451
TasI AATT 6 cut(s) 266, 304, 334, 456, 496, 518
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 4 cut(s) 257, 332, 500, 546
Tru9I TTAA 4 cut(s) 257, 332, 500, 546
TseFI GTSAC 1 cut(s) 158
TseI GCWGC 2 cut(s) 310, 313
Tsp45I GTSAC 1 cut(s) 158
TspDTI ATGAA 3 cut(s) 374, 531, 549
TspGWI ACGGA 1 cut(s) 478
Van91I CCANNNNNTGG 1 cut(s) 520
XapI RAATTY 3 cut(s) 304, 334, 496
XceI RCATGY 1 cut(s) 424
ZraI GACGTC 1 cut(s) 158
Zsp2I ATGCAT 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.